National Center for
Biotechnology Information

5VVS: RNA pol II elongation complex

PDB ID:

MMDB ID:

156485

PDB Deposition Date:

2017/5/20

Updated in MMDB:

2017/12

Experimental Method:

electron microscopy

Resolution:

6.4 Å

Source Organism:

Saccharomyces cerevisiae S288C▼

Taxonomy	Molecule
Saccharomyces cerevisiae S288C	A, B, C, D, E, F, G, H, I, J, K, L
Saccharomyces cerevisiae	R, N, T

Similar Structures:

Biological Unit for 5VVS: 15-meric; determined by author and by software (PISA)

Molecular Components in 5VVS
Label	Count	Molecule
Proteins (12 molecules)
A	1	DNA-directed RNA Polymerase II Subunit Rpb1
B	1	DNA-directed RNA Polymerase II Subunit Rpb2
C	1	DNA-directed RNA Polymerase II Subunit Rpb3
D	1	DNA-directed RNA Polymerase II Subunit Rpb4
E	1	DNA-directed RNA Polymerases I, II, and III Subunit Rpabc1
F	1	DNA-directed RNA Polymerases I, II, and III Subunit Rpabc2
G	1	DNA-directed RNA Polymerase II Subunit Rpb7
H	1	DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
I	1	DNA-directed RNA Polymerase II Subunit Rpb9
J	1	DNA-directed RNA Polymerases I, II, and III Subunit Rpabc5
K	1	DNA-directed RNA Polymerase II Subunit Rpb11
L	1	DNA-directed RNA Polymerases I, II, and III Subunit Rpabc4
Nucleotides(3 molecules)
R	1	RNA
N	1	DNA (Nts)
T	1	DNA (Ts)
Chemicals and Non-standard biopolymers (9 molecules)
1	8	ZINC ION
2	1	MAGNESIUM ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB