5J7Z: Crystal structure of endoglycoceramidase I from Rhodococ-cus equi in complex with GM1

PDB ID: 5J7ZDownload
MMDB ID: 138638
PDB Deposition Date: 2016/4/7
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.15  Å
Source Organism:
Similar Structures:
Biological Unit for 5J7Z: monomeric; determined by author and by software (PISA)
Molecular Components in 5J7Z
Label Count Molecule
Protein (1 molecule)
1
Putative Secreted Endoglycosylceramidase
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
1
beta-D-glucopyranosebeta-D-glucopyranose
2
2
beta-D-galactopyranosebeta-D-galactopyranose
3
1
2-acetamido-2-deoxy-beta-D-galactopyranose2-acetamido-2-deoxy-beta-D-galactopyranose
4
1
N-acetyl-alpha-neuraminic acidN-acetyl-alpha-neuraminic acid
5
1
SODIUM IONSODIUM ION
6
1
N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)STEARAMIDEN-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)STEARAMIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303