4AQY: Structure of ribosome-apramycin complexes

PDB ID: 4AQYDownload
MMDB ID: 171922
PDB Deposition Date: 2012/4/20
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 3.5  Å
Source Organism:
Similar Structures:
Biological Unit for 4AQY: 23-meric; determined by author
Molecular Components in 4AQY
Label Count Molecule
Proteins (20 molecules)
1
30S Ribosomal Protein S2
Molecule annotation
1
30S Ribosomal Protein S3
Molecule annotation
1
30S Ribosomal Protein S4
(Gene symbol: rpsD)
Molecule annotation
1
30S Ribosomal Protein S5
Molecule annotation
1
30S Ribosomal Protein S6
Molecule annotation
1
30S Ribosomal Protein S7
(Gene symbol: TTHA1696)
Molecule annotation
1
30S Ribosomal Protein S8
Molecule annotation
1
30S Ribosomal Protein S9
Molecule annotation
1
30S Ribosomal Protein S10
Molecule annotation
1
30S Ribosomal Protein S11
Molecule annotation
1
30S Ribosomal Protein S12
Molecule annotation
1
30S Ribosomal Protein S13
Molecule annotation
1
30S Ribosomal Protein S14
Molecule annotation
1
30S Ribosomal Protein S15
Molecule annotation
1
30S Ribosomal Protein S16
Molecule annotation
1
30S Ribosomal Protein S17
Molecule annotation
1
30S Ribosomal Protein S18
Molecule annotation
1
30S Ribosomal Protein S19
Molecule annotation
1
30S Ribosomal Protein S20
(Gene symbol: rpsT)
Molecule annotation
1
30S Ribosomal Protein THX
Molecule annotation
Nucleotides(3 molecules)
1
16S Ribosomal RNA
Molecule annotation
1
5'-r(*up*up*cp*ap*ap*ap)-3'
Molecule annotation
1
5'-r(*gp*gp*gp*ap*up*up*gp*ap*ap*ap*ap*up*cp*cp*c)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (225 molecules)
1
203
MAGNESIUM IONMAGNESIUM ION
2
15
POTASSIUM IONPOTASSIUM ION
3
5
APRAMYCINAPRAMYCIN
4
2
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303