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Conserved domains on  [gi|1720400458|ref|XP_030107876|]
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cip1-interacting zinc finger protein isoform X2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10263 super family cl35903
DNA translocase FtsK; Provisional
 288-477 2.21e-07

DNA translocase FtsK; Provisional


The actual alignment was detected with superfamily member PRK10263:

Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 55.09  E-value: 2.21e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  288 TGQPQARVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPkllrqaqtqtSPEHLAPQQDQVEPQVPSQPP 367
Cdd:PRK10263   327 TTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAP----------APEGYPQQSQYAQPAVQYNEP 396

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  368 WQlQPRETDPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPTQAQSQEQTSEKTQDQPQTWPQGSVPPPEQASGPACATE 447
Cdd:PRK10263   397 LQ-QPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQE 475

                          170       180       190
                   ....*....|....*....|....*....|
gi 1720400458  448 PQlsSHAAEAGSDPDKALPEPVSAQSSEDR 477
Cdd:PRK10263   476 PL--YQQPQPVEQQPVVEPEPVVEETKPAR 503
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 46-483 1.58e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 1.58e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458   46 PPQASLSIPVSRGLPQQSSPQQLLSLQGLHSTSLLNGPMLQRALLLQQLQGLDQFAMPPATYDGASLTMPTATLGNLRAF 125
Cdd:PHA03247  2619 PDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSL 2698

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  126 NVTAPSLAAPSLTPPQMVTPNLQQFFPQATRQSLLGPPPVGVPINPSQLNHSGRNTQKQARTPSSTTPNRKTVPledrED 205
Cdd:PHA03247  2699 ADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPP----AA 2774

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  206 PTEGSEEATElqmdtcedqdslVGPDSMLSEPQVPEPEPFETLEPPAkrcrrvrikgidhhnwlfaylwifASSEESTEK 285
Cdd:PHA03247  2775 PAAGPPRRLT------------RPAVASLSESRESLPSPWDPADPPA------------------------AVLAPAAAL 2818

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  286 GPTGQPQARVQPQT--QMTAPKQTQTPDRLPEPPEVQMLP----RIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVE 359
Cdd:PHA03247  2819 PPAASPAGPLPPPTsaQPTAPPPPPGPPPPSLPLGGSVAPggdvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESF 2898

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  360 PQVPSQPPWQLQPretdppnqaqaqtqpqplwqaqsqkQAQTQAHPQVPTQAQSQEQTSEKTQDQPQtwpqgsvPPPEQA 439
Cdd:PHA03247  2899 ALPPDQPERPPQP-------------------------QAPPPPQPQPQPPPPPQPQPPPPPPPRPQ-------PPLAPT 2946

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....
gi 1720400458  440 SGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSEDRSREASA 483
Cdd:PHA03247  2947 TDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 646-670 1.87e-05

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


:

Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 42.16  E-value: 1.87e-05
                          10        20
                  ....*....|....*....|....*
gi 1720400458 646 FCTICNRYFKTPRKFVEHVKSQGHK 670
Cdd:pfam12171   3 YCVLCDKYFKSENALQNHLKSKKHK 27
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 762-795 1.66e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


:

Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 36.85  E-value: 1.66e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1720400458  762 GYVCQICHKFYDSNSELRlSHCKSLAHFENLQKY 795
Cdd:smart00451   3 GFYCKLCNVTFTDEISVE-AHLKGKKHKKNVKKR 35
GIY-YIG_SF super family cl15257
GIY-YIG nuclease domain superfamily; The GIY-YIG nuclease domain superfamily includes a large ...
 615-682 2.90e-03

GIY-YIG nuclease domain superfamily; The GIY-YIG nuclease domain superfamily includes a large and diverse group of proteins involved in many cellular processes, such as class I homing GIY-YIG family endonucleases, prokaryotic nucleotide excision repair proteins UvrC and Cho, type II restriction enzymes, the endonuclease/reverse transcriptase of eukaryotic retrotransposable elements, and a family of eukaryotic enzymes that repair stalled replication forks. All of these members contain a conserved GIY-YIG nuclease domain that may serve as a scaffold for the coordination of a divalent metal ion required for catalysis of the phosphodiester bond cleavage. By combining with different specificity, targeting, or other domains, the GIY-YIG nucleases may perform different functions.


The actual alignment was detected with superfamily member cd10442:

Pssm-ID: 472790  Cd Length: 92  Bit Score: 37.73  E-value: 2.90e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 615 WCNTCQVYYVGDLIQ--HRRTQEHKVAKQSlrpfcticNRYFKTPrkFVEHVKSQGHKDKAQELKTLEKE 682
Cdd:cd10442     6 PCPKCGLVYIGETKRplRERMKEHRRAIRL--------SGTKKSA--VAKHFNEEGHSIDSDRVRILDKE 65
 
Name Accession Description Interval E-value
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 288-477 2.21e-07

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 55.09  E-value: 2.21e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  288 TGQPQARVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPkllrqaqtqtSPEHLAPQQDQVEPQVPSQPP 367
Cdd:PRK10263   327 TTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAP----------APEGYPQQSQYAQPAVQYNEP 396

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  368 WQlQPRETDPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPTQAQSQEQTSEKTQDQPQTWPQGSVPPPEQASGPACATE 447
Cdd:PRK10263   397 LQ-QPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQE 475

                          170       180       190
                   ....*....|....*....|....*....|
gi 1720400458  448 PQlsSHAAEAGSDPDKALPEPVSAQSSEDR 477
Cdd:PRK10263   476 PL--YQQPQPVEQQPVVEPEPVVEETKPAR 503
PHA03247 PHA03247
large tegument protein UL36; Provisional
 46-483 1.58e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 1.58e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458   46 PPQASLSIPVSRGLPQQSSPQQLLSLQGLHSTSLLNGPMLQRALLLQQLQGLDQFAMPPATYDGASLTMPTATLGNLRAF 125
Cdd:PHA03247  2619 PDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSL 2698

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  126 NVTAPSLAAPSLTPPQMVTPNLQQFFPQATRQSLLGPPPVGVPINPSQLNHSGRNTQKQARTPSSTTPNRKTVPledrED 205
Cdd:PHA03247  2699 ADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPP----AA 2774

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  206 PTEGSEEATElqmdtcedqdslVGPDSMLSEPQVPEPEPFETLEPPAkrcrrvrikgidhhnwlfaylwifASSEESTEK 285
Cdd:PHA03247  2775 PAAGPPRRLT------------RPAVASLSESRESLPSPWDPADPPA------------------------AVLAPAAAL 2818

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  286 GPTGQPQARVQPQT--QMTAPKQTQTPDRLPEPPEVQMLP----RIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVE 359
Cdd:PHA03247  2819 PPAASPAGPLPPPTsaQPTAPPPPPGPPPPSLPLGGSVAPggdvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESF 2898

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  360 PQVPSQPPWQLQPretdppnqaqaqtqpqplwqaqsqkQAQTQAHPQVPTQAQSQEQTSEKTQDQPQtwpqgsvPPPEQA 439
Cdd:PHA03247  2899 ALPPDQPERPPQP-------------------------QAPPPPQPQPQPPPPPQPQPPPPPPPRPQ-------PPLAPT 2946

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....
gi 1720400458  440 SGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSEDRSREASA 483
Cdd:PHA03247  2947 TDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 646-670 1.87e-05

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 42.16  E-value: 1.87e-05
                          10        20
                  ....*....|....*....|....*
gi 1720400458 646 FCTICNRYFKTPRKFVEHVKSQGHK 670
Cdd:pfam12171   3 YCVLCDKYFKSENALQNHLKSKKHK 27
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 287-416 5.39e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 43.87  E-value: 5.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 287 PTGQPQARVQPQTQmtAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVEPQVPSQP 366
Cdd:pfam09770 222 PAAPPAQQAQQQQQ--FPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQP 299

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720400458 367 PWQLQ-------PRETDPPNQAQAQTQPQPLWQAQSQ----KQAQTQAHPQVPTQAQSQEQ 416
Cdd:pfam09770 300 TQILQnpnrlsaARVGYPQNPQPGVQPAPAHQAHRQQgsfgRQAPIITHPQQLAQLSEEEK 360
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 762-795 1.66e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 36.85  E-value: 1.66e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1720400458  762 GYVCQICHKFYDSNSELRlSHCKSLAHFENLQKY 795
Cdd:smart00451   3 GFYCKLCNVTFTDEISVE-AHLKGKKHKKNVKKR 35
GIY-YIG_PLEs cd10442
Catalytic GIY-YIG endonuclease domain of penelope-like elements and similar proteins; This ...
 615-682 2.90e-03

Catalytic GIY-YIG endonuclease domain of penelope-like elements and similar proteins; This model corresponds to the EN domain of PLEs that contains catalytic module of the GIY-YIG endonucleases of group I bacterial/organellar introns, as well as bacterial UvrC DNA repair proteins. It can cleave DNA with low nucleotide sequence specificity. However, the PLEs EN domain is distinct from other GIY-YIG endonucleases by the presence of a well-conserved CCHH motif (CX(2-7)CX(33-39)HX(3-5)H, X can be any residue). The role of the CCHH motif has not yet been identified. Penelope-like elements (PLEs) represent a novel class of eukaryotic retroelements, which do not belong to either long terminal repeat (LTR) retrotransposons or non-LTR retrotransposons (often called LINEs), but instead form a sister clade to telomerase reverse transcriptases (TERTs), highly specialized non-mobile reverse transcriptases (RTs) which are responsible for the addition of telomeric repeats to the ends of eukaryotic chromosomes. The single open reading frame (ORF) encoded by PLE consists of two principal domains, RT domain and endonuclease (EN) domain, jointed by a linker region of variable length. Both of these two domains are functionally active.


Pssm-ID: 198389  Cd Length: 92  Bit Score: 37.73  E-value: 2.90e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 615 WCNTCQVYYVGDLIQ--HRRTQEHKVAKQSlrpfcticNRYFKTPrkFVEHVKSQGHKDKAQELKTLEKE 682
Cdd:cd10442     6 PCPKCGLVYIGETKRplRERMKEHRRAIRL--------SGTKKSA--VAKHFNEEGHSIDSDRVRILDKE 65
 
Name Accession Description Interval E-value
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 288-477 2.21e-07

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 55.09  E-value: 2.21e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  288 TGQPQARVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPkllrqaqtqtSPEHLAPQQDQVEPQVPSQPP 367
Cdd:PRK10263   327 TTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAP----------APEGYPQQSQYAQPAVQYNEP 396

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  368 WQlQPRETDPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPTQAQSQEQTSEKTQDQPQTWPQGSVPPPEQASGPACATE 447
Cdd:PRK10263   397 LQ-QPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQE 475

                          170       180       190
                   ....*....|....*....|....*....|
gi 1720400458  448 PQlsSHAAEAGSDPDKALPEPVSAQSSEDR 477
Cdd:PRK10263   476 PL--YQQPQPVEQQPVVEPEPVVEETKPAR 503
PHA03247 PHA03247
large tegument protein UL36; Provisional
 46-483 1.58e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 1.58e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458   46 PPQASLSIPVSRGLPQQSSPQQLLSLQGLHSTSLLNGPMLQRALLLQQLQGLDQFAMPPATYDGASLTMPTATLGNLRAF 125
Cdd:PHA03247  2619 PDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSL 2698

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  126 NVTAPSLAAPSLTPPQMVTPNLQQFFPQATRQSLLGPPPVGVPINPSQLNHSGRNTQKQARTPSSTTPNRKTVPledrED 205
Cdd:PHA03247  2699 ADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPP----AA 2774

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  206 PTEGSEEATElqmdtcedqdslVGPDSMLSEPQVPEPEPFETLEPPAkrcrrvrikgidhhnwlfaylwifASSEESTEK 285
Cdd:PHA03247  2775 PAAGPPRRLT------------RPAVASLSESRESLPSPWDPADPPA------------------------AVLAPAAAL 2818

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  286 GPTGQPQARVQPQT--QMTAPKQTQTPDRLPEPPEVQMLP----RIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVE 359
Cdd:PHA03247  2819 PPAASPAGPLPPPTsaQPTAPPPPPGPPPPSLPLGGSVAPggdvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESF 2898

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  360 PQVPSQPPWQLQPretdppnqaqaqtqpqplwqaqsqkQAQTQAHPQVPTQAQSQEQTSEKTQDQPQtwpqgsvPPPEQA 439
Cdd:PHA03247  2899 ALPPDQPERPPQP-------------------------QAPPPPQPQPQPPPPPQPQPPPPPPPRPQ-------PPLAPT 2946

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....
gi 1720400458  440 SGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSEDRSREASA 483
Cdd:PHA03247  2947 TDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990
PHA03247 PHA03247
large tegument protein UL36; Provisional
 130-551 1.91e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 1.91e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  130 PSLAAPSLTPPQMVTPNLQQFFPQATRQSLLGPPPVGVPINPSQLNHSG-------RNTQKQARTPSSTTPNRKTVPLED 202
Cdd:PHA03247  2609 RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPApgrvsrpRRARRLGRAAQASSPPQRPRRRAA 2688

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  203 RedPTegseeatelqmdtcedqdslVGPDSMLSEPQVPEPEPfETLEPPAKRCRRVRIKGIDHHNWLFAYLWIFASSEES 282
Cdd:PHA03247  2689 R--PT--------------------VGSLTSLADPPPPPPTP-EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVP 2745

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  283 TEKGPTGQPQARVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPKLLRQAQ-TQTSPEHLAPQQDQVEPQ 361
Cdd:PHA03247  2746 AGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADpPAAVLAPAAALPPAASPA 2825

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  362 VPSQPPWQLQPRETDPPNQAQAQTQPQPLWQA------------QSQKQAQTQAHPQVPTQAQSQEQTSEKTQDQPQTWP 429
Cdd:PHA03247  2826 GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVApggdvrrrppsrSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQP 2905

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  430 QgsvPPPEQASGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSEdrsrEASAGGLDLGECEKRAGEMlgmwgAGSSLK 509
Cdd:PHA03247  2906 E---RPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD----PAGAGEPSGAVPQPWLGAL-----VPGRVA 2973

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|..
gi 1720400458  510 VTILQSSNSRAFNTTPLTSGPRPGDstSATPAIASTPSKQSL 551
Cdd:PHA03247  2974 VPRFRVPQPAPSREAPASSTPPLTG--HSLSRVSSWASSLAL 3013
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 277-488 4.77e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 50.37  E-value: 4.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 277 ASSEESTEKGPTGQPQARVQPQ--TQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPEHLAPQ 354
Cdd:PRK07764  595 AGGEGPPAPASSGPPEEAARPAapAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAG 674

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 355 QDQVEPQVPSQPPWQLQPRETDPPNQAQAQTQpqplWQAQSQKQAQTQAHPQVPTQAQSQEQTSEKTQ----DQPQTWPQ 430
Cdd:PRK07764  675 GAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA----ATPPAGQADDPAAQPPQAAQGASAPSPAADDPvplpPEPDDPPD 750

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1720400458 431 GSVPPPEQASGPACATEPQLSSHAAEA-GSDPDKALPEPVSAQSSEDRsREASAGGLDL 488
Cdd:PRK07764  751 PAGAPAQPPPPPAPAPAAAPAAAPPPSpPSEEEEMAEDDAPSMDDEDR-RDAEEVAMEL 808
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 646-670 1.87e-05

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 42.16  E-value: 1.87e-05
                          10        20
                  ....*....|....*....|....*
gi 1720400458 646 FCTICNRYFKTPRKFVEHVKSQGHK 670
Cdd:pfam12171   3 YCVLCDKYFKSENALQNHLKSKKHK 27
PHA03247 PHA03247
large tegument protein UL36; Provisional
 139-461 3.25e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 3.25e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  139 PPQMVTPNLQqffPQATRQSLLGPPPVGVPINPSQlnhsgrnTQKQARTPSSTTPNRKTVPLEDREDPtEGSEEATELQM 218
Cdd:PHA03247  2551 PPPPLPPAAP---PAAPDRSVPPPRPAPRPSEPAV-------TSRARRPDAPPQSARPRAPVDDRGDP-RGPAPPSPLPP 2619

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  219 DTCEDQDSLVGPDSMLSEPQVPEPEPFETLEPP--------AKRCRRVRIKGidhhnwlfaylwiFASSEESTEKGPTgq 290
Cdd:PHA03247  2620 DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPrddpapgrVSRPRRARRLG-------------RAAQASSPPQRPR-- 2684

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  291 PQARVQPQTQMTAPKQTQTPDRLPEPPevqmlPRIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQ-----VEPQVPSQ 365
Cdd:PHA03247  2685 RRAARPTVGSLTSLADPPPPPPTPEPA-----PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAgpatpGGPARPAR 2759

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  366 PPWQLQPRETDPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPTQAQSQEQTSEKTQDQPQTW-PQGSVPPPEQA--SGP 442
Cdd:PHA03247  2760 PPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAAsPAGPLPPPTSAqpTAP 2839

                          330
                   ....*....|....*....
gi 1720400458  443 ACATEPQLSSHAAEAGSDP 461
Cdd:PHA03247  2840 PPPPGPPPPSLPLGGSVAP 2858
PRK10927 PRK10927
cell division protein FtsN;
281-439 3.43e-05

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 46.98  E-value: 3.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 281 ESTEKGPTGQPQARVQPQTQMTAPKQT---QTPDRLPEPPEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQ 357
Cdd:PRK10927  101 EPSAGGEVKTPEQLTPEQRQLLEQMQAdmrQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQ 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 358 VEPQVPSQPPWQLQPRetdPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPT--QAQSQEQTSEKTQDQPQTWPQGSVPP 435
Cdd:PRK10927  181 QQTRTSQAAPVQAQPR---QSKPASTQQPYQDLLQTPAHTTAQSKPQQAAPVtrAADAPKPTAEKKDERRWMVQCGSFRG 257


                  ....
gi 1720400458 436 PEQA 439
Cdd:PRK10927  258 AEQA 261
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 278-425 5.19e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 47.03  E-value: 5.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 278 SSEESTEKGPTGQPQARVQPQTQmTAPKQTQTPDRLPEPPEVQMLPR--IQPQALQIQTQPKLLRQAQTQTSPEHLAPQQ 355
Cdd:PRK14949  639 SSADRKPKTPPSRAPPASLSKPA-SSPDASQTSASFDLDPDFELATHqsVPEAALASGSAPAPPPVPDPYDRPPWEEAPE 717

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 356 DQVEPQVPSQPPwqlqpRETDPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPTQAQSQEQTSEKTQDQP 425
Cdd:PRK14949  718 VASANDGPNNAA-----EGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTALTQTSSEVQDTE 782
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 316-436 1.51e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 45.85  E-value: 1.51e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  316 PPEVQMLPRIQPQAlqiQTQPKLLRQAQTQTSPEHLAPQQDQVEPQVPSQPPWQLQPRETDPPNQAQAqtqpqplwqAQS 395
Cdd:PRK10263   740 PHEPLFTPIVEPVQ---QPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQY---------QQP 807

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1720400458  396 QKQAQTQAHPQVPTQAQSQEQTSEKTQDQPQTWPQGSVPPP 436
Cdd:PRK10263   808 QQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHP 848
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 287-419 2.81e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 44.47  E-value: 2.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 287 PTGQPQARVQPQTQMTAPKQTQTPdrlPEPPEVQMLPRIQPQALQIQTQpklLRQAQTQTSPEHLAPQQDQVEPQVPSQP 366
Cdd:PRK07994  383 ATAAPTAAVAPPQAPAVPPPPASA---PQQAPAVPLPETTSQLLAARQQ---LQRAQGATKAKKSEPAAASRARPVNSAL 456

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1720400458 367 PW--QLQPRETDPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPTQAQSQEQTSE 419
Cdd:PRK07994  457 ERlaSVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPE 511
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 290-375 2.89e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 44.69  E-value: 2.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  290 QPQARVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPkllrQAQTQTSPEHLAPQQDQVEPQVPSQPpwq 369
Cdd:PRK10263   767 QPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAP----QPQYQQPQQPVAPQPQYQQPQQPVAP--- 839


                   ....*.
gi 1720400458  370 lQPRET 375
Cdd:PRK10263   840 -QPQDT 844
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 287-416 5.39e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 43.87  E-value: 5.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 287 PTGQPQARVQPQTQmtAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVEPQVPSQP 366
Cdd:pfam09770 222 PAAPPAQQAQQQQQ--FPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQP 299

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720400458 367 PWQLQ-------PRETDPPNQAQAQTQPQPLWQAQSQ----KQAQTQAHPQVPTQAQSQEQ 416
Cdd:pfam09770 300 TQILQnpnrlsaARVGYPQNPQPGVQPAPAHQAHRQQgsfgRQAPIITHPQQLAQLSEEEK 360
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 287-378 1.41e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 42.38  E-value: 1.41e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458  287 PTGQPQARVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPkllrQAQTQTSPEHLAPQQDQVEPQVP--S 364
Cdd:PRK10263   751 PVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAP----QPQYQQPQQPVAPQPQYQQPQQPvaP 826

                           90
                   ....*....|....
gi 1720400458  365 QPPWQlQPRETDPP 378
Cdd:PRK10263   827 QPQYQ-QPQQPVAP 839
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 762-795 1.66e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 36.85  E-value: 1.66e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1720400458  762 GYVCQICHKFYDSNSELRlSHCKSLAHFENLQKY 795
Cdd:smart00451   3 GFYCKLCNVTFTDEISVE-AHLKGKKHKKNVKKR 35
GIY-YIG_PLEs cd10442
Catalytic GIY-YIG endonuclease domain of penelope-like elements and similar proteins; This ...
 615-682 2.90e-03

Catalytic GIY-YIG endonuclease domain of penelope-like elements and similar proteins; This model corresponds to the EN domain of PLEs that contains catalytic module of the GIY-YIG endonucleases of group I bacterial/organellar introns, as well as bacterial UvrC DNA repair proteins. It can cleave DNA with low nucleotide sequence specificity. However, the PLEs EN domain is distinct from other GIY-YIG endonucleases by the presence of a well-conserved CCHH motif (CX(2-7)CX(33-39)HX(3-5)H, X can be any residue). The role of the CCHH motif has not yet been identified. Penelope-like elements (PLEs) represent a novel class of eukaryotic retroelements, which do not belong to either long terminal repeat (LTR) retrotransposons or non-LTR retrotransposons (often called LINEs), but instead form a sister clade to telomerase reverse transcriptases (TERTs), highly specialized non-mobile reverse transcriptases (RTs) which are responsible for the addition of telomeric repeats to the ends of eukaryotic chromosomes. The single open reading frame (ORF) encoded by PLE consists of two principal domains, RT domain and endonuclease (EN) domain, jointed by a linker region of variable length. Both of these two domains are functionally active.


Pssm-ID: 198389  Cd Length: 92  Bit Score: 37.73  E-value: 2.90e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 615 WCNTCQVYYVGDLIQ--HRRTQEHKVAKQSlrpfcticNRYFKTPrkFVEHVKSQGHKDKAQELKTLEKE 682
Cdd:cd10442     6 PCPKCGLVYIGETKRplRERMKEHRRAIRL--------SGTKKSA--VAKHFNEEGHSIDSDRVRILDKE 65
PHA03379 PHA03379
EBNA-3A; Provisional
 130-442 3.14e-03

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 41.20  E-value: 3.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 130 PSLAAPSLTPPQMVTPNLQQFFP--------QATRQSLLGPPPVGVPINPSQLNHSGRNTQKQARTPSSTTPNRKTVPLE 201
Cdd:PHA03379  508 PWEASLSQVPGVAFAPVMPQPMPvepvpvptVALERPVCPAPPLIAMQGPGETSGIVRVRERWRPAPWTPNPPRSPSQMS 587

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 202 DREDPTEGSEEATELQ--MDTCEDQDSLVGPDSMLSEPQVPEPEPFETlEPPAKRCRRVRIKGIdhhnwlfaylwifass 279
Cdd:PHA03379  588 VRDRLARLRAEAQPYQasVEVQPPQLTQVSPQQPMEYPLEPEQQMFPG-SPFSQVADVMRAGGV---------------- 650

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 280 eestekgPTGQPQARVQPQTQMTAPKQTQTPDR---LPEPPevqmLPRIQPQALQIqtqpKLLRQAQTQTSPEHLAPQQD 356
Cdd:PHA03379  651 -------PAMQPQYFDLPLQQPISQGAPLAPLRasmGPVPP----VPATQPQYFDI----PLTEPINQGASAAHFLPQQP 715

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 357 QVEPQVPSQPPWQ-LQPRETDPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPTQAQSqeqtsektqdQPQTWP-QGSVP 434
Cdd:PHA03379  716 MEGPLVPERWMFQgATLSQSVRPGVAQSQYFDLPLTQPINHGAPAAHFLHQPPMEGPW----------VPEQWMfQGAPP 785


                  ....*...
gi 1720400458 435 PPEQASGP 442
Cdd:PHA03379  786 SQGTDVVQ 793
PRK10927 PRK10927
cell division protein FtsN;
292-447 7.04e-03

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 39.66  E-value: 7.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 292 QARVQPQTQMTAPKQTQTPDRLpEPPEVQMLPRIQPQALQIQTQpkLLRQAQTQTSPEHLAP--QQDQVEPQVPSQPPWQ 369
Cdd:PRK10927   93 QPGVRAPTEPSAGGEVKTPEQL-TPEQRQLLEQMQADMRQQPTQ--LVEVPWNEQTPEQRQQtlQRQRQAQQLAEQQRLA 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 370 LQPRETDPPNQAQAQTQPqplwqaQSQKQAQTQAHPQVPTQAQSQE--QTSEKTQDQPQtwPQGSVPPPEQASGPACATE 447
Cdd:PRK10927  170 QQSRTTEQSWQQQTRTSQ------AAPVQAQPRQSKPASTQQPYQDllQTPAHTTAQSK--PQQAAPVTRAADAPKPTAE 241
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 284-469 7.99e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 40.06  E-value: 7.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 284 EKGPTGQPQARVQPQtqmtAPKQTQTPDRlPEPPEVQMLPRI--------QPQALQIQTQPKLLRQAQTQTSPEHLAPQQ 355
Cdd:PTZ00449  566 EHKPSKIPTLSKKPE----FPKDPKHPKD-PEEPKKPKRPRSaqrptrpkSPKLPELLDIPKSPKRPESPKSPKRPPPPQ 640

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400458 356 DQVEPQVPSQPPWQLQPRETDPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPTQAQSQEQTSEKTQDQPQTWPQGSVP- 434
Cdd:PTZ00449  641 RPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRp 720

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1720400458 435 -PPEQASGPACATEPQlsshaaeagSDPDKALPEPV 469
Cdd:PTZ00449  721 lPPKLPRDEEFPFEPI---------GDPDAEQPDDI 747
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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