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Conserved domains on  [gi|1387275027|ref|XP_024849776|]
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single-stranded DNA-binding protein 4 isoform X1 [Bos taurus]

Protein Classification

SSDP domain-containing protein( domain architecture ID 12053380)

SSDP domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SSDP pfam04503
Single-stranded DNA binding protein, SSDP; This is a family of eukaryotic single-stranded DNA ...
 151-456 6.11e-63

Single-stranded DNA binding protein, SSDP; This is a family of eukaryotic single-stranded DNA binding proteins with specificity to a pyrimidine-rich element found in the promoter region of the alpha2(I) collagen gene.


:

Pssm-ID: 461334 [Multi-domain]  Cd Length: 293  Bit Score: 206.35  E-value: 6.11e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 151 EHSSEAKAFQDYSA---AAAPSPVMGSMAPSDAMASGPMAPSFFQGPPGS---------QPSPYNPNaPMMGPHVQPFMS 218
Cdd:pfam04503   1 EHSSEAKAFHDYSFvssAAAPSPVMGQMPPGDGMPGGPMPPGFFQSPPSHpssqpsphaQPPPHNPA-TMMGPHSQPFMG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 219 PRFPGGPRPTLRMPSQPPV--GLPGSQPLLPGTMEPSPRAQGHSSMGPMQRVTPPRGMTsvgpqvragpgdwgvsgaapa 296
Cdd:pfam04503  80 PRYPGGPRPSVRMPQQGNDfnGPPGQQPMMPNSMDPTRPGGHPNMGGPMQRMNPPRGPG--------------------- 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 297 kpalTAPLPSQSYGGGGMRPPPNSLAGPG-LPTMNMGPGVRGPWASP-SGNSIPYSSSSPGS-YSGPPGGGGPPGTPIMP 373
Cdd:pfam04503 139 ----MGPMGPQSYGPGMRGPPPNSTDGPGgMPPMNMGPGGRRPWPQPnASNPLPYSSSSPGSyGGPPGGGGPPGPTPIMP 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 374 SPGDSTNSSENMYTIMNPIGPGAGRANFPLGPGPEGPMAAMSaMEPHHVNGSLGSGDLDGLpKSSPGAVagLSNTPGTPR 453
Cdd:pfam04503 215 SPQDSTNSGENMYTLMNPVGPGGNRANFPMGPGLEGPMGPNG-MEPHHSNGSLGSGDMDGM-KNSPANV--LSNGPGTPR 290


                  ...
gi 1387275027 454 DDG 456
Cdd:pfam04503 291 EDG 293
 
Name Accession Description Interval E-value
SSDP pfam04503
Single-stranded DNA binding protein, SSDP; This is a family of eukaryotic single-stranded DNA ...
 151-456 6.11e-63

Single-stranded DNA binding protein, SSDP; This is a family of eukaryotic single-stranded DNA binding proteins with specificity to a pyrimidine-rich element found in the promoter region of the alpha2(I) collagen gene.


Pssm-ID: 461334 [Multi-domain]  Cd Length: 293  Bit Score: 206.35  E-value: 6.11e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 151 EHSSEAKAFQDYSA---AAAPSPVMGSMAPSDAMASGPMAPSFFQGPPGS---------QPSPYNPNaPMMGPHVQPFMS 218
Cdd:pfam04503   1 EHSSEAKAFHDYSFvssAAAPSPVMGQMPPGDGMPGGPMPPGFFQSPPSHpssqpsphaQPPPHNPA-TMMGPHSQPFMG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 219 PRFPGGPRPTLRMPSQPPV--GLPGSQPLLPGTMEPSPRAQGHSSMGPMQRVTPPRGMTsvgpqvragpgdwgvsgaapa 296
Cdd:pfam04503  80 PRYPGGPRPSVRMPQQGNDfnGPPGQQPMMPNSMDPTRPGGHPNMGGPMQRMNPPRGPG--------------------- 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 297 kpalTAPLPSQSYGGGGMRPPPNSLAGPG-LPTMNMGPGVRGPWASP-SGNSIPYSSSSPGS-YSGPPGGGGPPGTPIMP 373
Cdd:pfam04503 139 ----MGPMGPQSYGPGMRGPPPNSTDGPGgMPPMNMGPGGRRPWPQPnASNPLPYSSSSPGSyGGPPGGGGPPGPTPIMP 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 374 SPGDSTNSSENMYTIMNPIGPGAGRANFPLGPGPEGPMAAMSaMEPHHVNGSLGSGDLDGLpKSSPGAVagLSNTPGTPR 453
Cdd:pfam04503 215 SPQDSTNSGENMYTLMNPVGPGGNRANFPMGPGLEGPMGPNG-MEPHHSNGSLGSGDMDGM-KNSPANV--LSNGPGTPR 290


                  ...
gi 1387275027 454 DDG 456
Cdd:pfam04503 291 EDG 293
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 165-328 3.35e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.52  E-value: 3.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 165 AAAPSPVMGSMAPSDAMASGPMAPSFFQGPPGSQPSPYNPNAPMMGPHVQPFMSPRFPGGPRPTLRMPSQPPVGLPGSQP 244
Cdd:PRK07764  616 AAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAG 695

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 245 LLPGTMEPSPRAQGHSSMGPMQRVTPPRGMTSVGPQVRAGPGDWGVSGAAPAKPAlTAPLPSQSYGGGGMRPPPNSLAGP 324
Cdd:PRK07764  696 AAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPD-PAGAPAQPPPPPAPAPAAAPAAAP 774


                  ....
gi 1387275027 325 GLPT 328
Cdd:PRK07764  775 PPSP 778
 
Name Accession Description Interval E-value
SSDP pfam04503
Single-stranded DNA binding protein, SSDP; This is a family of eukaryotic single-stranded DNA ...
 151-456 6.11e-63

Single-stranded DNA binding protein, SSDP; This is a family of eukaryotic single-stranded DNA binding proteins with specificity to a pyrimidine-rich element found in the promoter region of the alpha2(I) collagen gene.


Pssm-ID: 461334 [Multi-domain]  Cd Length: 293  Bit Score: 206.35  E-value: 6.11e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 151 EHSSEAKAFQDYSA---AAAPSPVMGSMAPSDAMASGPMAPSFFQGPPGS---------QPSPYNPNaPMMGPHVQPFMS 218
Cdd:pfam04503   1 EHSSEAKAFHDYSFvssAAAPSPVMGQMPPGDGMPGGPMPPGFFQSPPSHpssqpsphaQPPPHNPA-TMMGPHSQPFMG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 219 PRFPGGPRPTLRMPSQPPV--GLPGSQPLLPGTMEPSPRAQGHSSMGPMQRVTPPRGMTsvgpqvragpgdwgvsgaapa 296
Cdd:pfam04503  80 PRYPGGPRPSVRMPQQGNDfnGPPGQQPMMPNSMDPTRPGGHPNMGGPMQRMNPPRGPG--------------------- 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 297 kpalTAPLPSQSYGGGGMRPPPNSLAGPG-LPTMNMGPGVRGPWASP-SGNSIPYSSSSPGS-YSGPPGGGGPPGTPIMP 373
Cdd:pfam04503 139 ----MGPMGPQSYGPGMRGPPPNSTDGPGgMPPMNMGPGGRRPWPQPnASNPLPYSSSSPGSyGGPPGGGGPPGPTPIMP 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 374 SPGDSTNSSENMYTIMNPIGPGAGRANFPLGPGPEGPMAAMSaMEPHHVNGSLGSGDLDGLpKSSPGAVagLSNTPGTPR 453
Cdd:pfam04503 215 SPQDSTNSGENMYTLMNPVGPGGNRANFPMGPGLEGPMGPNG-MEPHHSNGSLGSGDMDGM-KNSPANV--LSNGPGTPR 290


                  ...
gi 1387275027 454 DDG 456
Cdd:pfam04503 291 EDG 293
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 165-328 3.35e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.52  E-value: 3.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 165 AAAPSPVMGSMAPSDAMASGPMAPSFFQGPPGSQPSPYNPNAPMMGPHVQPFMSPRFPGGPRPTLRMPSQPPVGLPGSQP 244
Cdd:PRK07764  616 AAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAG 695

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 245 LLPGTMEPSPRAQGHSSMGPMQRVTPPRGMTSVGPQVRAGPGDWGVSGAAPAKPAlTAPLPSQSYGGGGMRPPPNSLAGP 324
Cdd:PRK07764  696 AAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPD-PAGAPAQPPPPPAPAPAAAPAAAP 774


                  ....
gi 1387275027 325 GLPT 328
Cdd:PRK07764  775 PPSP 778
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
161-332 1.27e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.48  E-value: 1.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 161 DYSAAAAPSPVMGSMAPSDAMASGPMAPSFFQGPPGSQPSPYNPNApmmgphvQPFMSPRFPGGPRPTLRMPSQPPVGLP 240
Cdd:PRK12323  401 APPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG-------APAPAPAPAAAPAAAARPAAAGPRPVA 473

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 241 GSQPLLPGTMEPSPRAQGHSSMGPMQRVTPPRGMTSVGPQVRAGPGDW--------GVSGAAPAKPALT-----APLPSQ 307
Cdd:PRK12323  474 AAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWvaesipdpATADPDDAFETLApapaaAPAPRA 553

                         170       180
                  ....*....|....*....|....*.
gi 1387275027 308 SYGGGGMRPP-PNSLAGPGLPTMNMG 332
Cdd:PRK12323  554 AAATEPVVAPrPPRASASGLPDMFDG 579
PHA03247 PHA03247
large tegument protein UL36; Provisional
 142-420 2.66e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 2.66e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027  142 AAPDRREACEHSSEAKAFQDYSAAAAPSPVMGSMAPSDAMASGPMAPSFFQGPPGSQPSPYNPNAPMMGPHVQPFMSPRF 221
Cdd:PHA03247  2621 THAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLAD 2700

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027  222 PGGPRPTlrmPSQPPVGLPGSQPLLPGTMEpsprAQGHSSMGPMQRVTPPrgmTSVGPQVRAGPgdwgvsgAAPAKPALT 301
Cdd:PHA03247  2701 PPPPPPT---PEPAPHALVSATPLPPGPAA----ARQASPALPAAPAPPA---VPAGPATPGGP-------ARPARPPTT 2763

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027  302 APLPSQSYGGGGMRPPPNSLAGP-GLPTMNMGPGVRGPWASPSGNSIPYSSSSPGSYSGPPGGGGPPGTPIMPSPGDSTN 380
Cdd:PHA03247  2764 AGPPAPAPPAAPAAGPPRRLTRPaVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....
gi 1387275027  381 ----SSENMYTIMNPIGPGAGRanfplgpGPEGPMAAMSAMEPH 420
Cdd:PHA03247  2844 gpppPSLPLGGSVAPGGDVRRR-------PPSRSPAAKPAAPAR 2880
PHA03378 PHA03378
EBNA-3B; Provisional
 198-338 4.18e-04

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 43.13  E-value: 4.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 198 QPSPYNPNApMMGPHVQPFMS---PRFPGGPRPTLRMPS--QPPVGLPGSQPLLPGTMEPSPRAQGHSSMGPMQRVTPPR 272
Cdd:PHA03378  675 QPSPTGANT-MLPIQWAPGTMqppPRAPTPMRPPAAPPGraQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGR 753

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1387275027 273 GMTSVGPQVRAGPGDWGVSGAAPAKPALTAPLPSQS-YGGGGMRPPPNSLAGPGLPTMNMGPGVRGP 338
Cdd:PHA03378  754 ARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRpRGAPTPQPPPQAGPTSMQLMPRAAPGQQGP 820
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 164-343 1.17e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 1.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 164 AAAAPSPVMGSMAPSDAMASGPMAPSFFQ----GPPGSQPSPYNPNAPMMGPHVQPFMSPRFPGGPRPTLRMPSQPPVGL 239
Cdd:PRK07764  586 AVVGPAPGAAGGEGPPAPASSGPPEEAARpaapAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDG 665

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 240 PGSQPLLPGTMEPSPRAQGHSSMGPMQRVTPPRGMTSVGPQVRAGPGDWGVSGAAPAKPALTAPLPSQSYGGGGMRPP-- 317
Cdd:PRK07764  666 GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPep 745

                         170       180
                  ....*....|....*....|....*....
gi 1387275027 318 ---PNSLAGPGLPTMNMGPGVRGPWASPS 343
Cdd:PRK07764  746 ddpPDPAGAPAQPPPPPAPAPAAAPAAAP 774
PHA03247 PHA03247
large tegument protein UL36; Provisional
 163-328 1.29e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 1.29e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027  163 SAAAAPSPVMGSMAPSDAMASGPMAPSFFQGPPgSQPSPYNPNAPmmgPHVQPFMSPRFPGGPRPTLRMPSqPPVGLPGS 242
Cdd:PHA03247  2764 AGPPAPAPPAAPAAGPPRRLTRPAVASLSESRE-SLPSPWDPADP---PAAVLAPAAALPPAASPAGPLPP-PTSAQPTA 2838

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027  243 QPLLPGTMEPSPRAQGHSSMGPMQRVTPPRGMTSVGPQVRAGPGDWGVSGAAPAKPALTAPLPSQsyggGGMRPPPNSLA 322
Cdd:PHA03247  2839 PPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPD----QPERPPQPQAP 2914


                   ....*.
gi 1387275027  323 GPGLPT 328
Cdd:PHA03247  2915 PPPQPQ 2920
PHA03247 PHA03247
large tegument protein UL36; Provisional
 173-444 1.33e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 1.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027  173 GSMAPSDAMASGPMAPSffQGPPGSQPSPyNPNAPMMG-----PHVQP-FMSPRFPGGPRPTLRMPSQPPVGLPGSQPLL 246
Cdd:PHA03247  2549 GDPPPPLPPAAPPAAPD--RSVPPPRPAP-RPSEPAVTsrarrPDAPPqSARPRAPVDDRGDPRGPAPPSPLPPDTHAPD 2625

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027  247 PGTMEPSPRAQGHSSMGPMQRVTPPRGMTSVGPQvRAGPGDWGVSGAAPAKPAltapLPSQSYGGGGMRPPPNSLAGPGL 326
Cdd:PHA03247  2626 PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPG-RVSRPRRARRLGRAAQAS----SPPQRPRRRAARPTVGSLTSLAD 2700

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027  327 PtmnmgPGVRGPWASPSGNSIPYSSSSPGSYSGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGPGAGRANFPLGPG 406
Cdd:PHA03247  2701 P-----PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP 2775

                          250       260       270
                   ....*....|....*....|....*....|....*...
gi 1387275027  407 PEGPMAAMSAMEPHHVNGSLGSGDLDGLPKSSPGAVAG 444
Cdd:PHA03247  2776 AAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLA 2813
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
158-318 4.18e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.86  E-value: 4.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 158 AFQDYSAAAAPSPVMGSMAPSDAMASGPMAPSFFQGPPGSQPSPYNPNAPMMGPHVQPFMSPRFPGGPRPTLRMPSQPPV 237
Cdd:PRK12323  362 AFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASA 441

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 238 GLPGSQPLLPGTMEPSPRAQGHSSMGPmqrvTPPRGMTSVGPQVRAGPgdwgvsgAAPAKPALTAPLPSQSYGGGGMRPP 317
Cdd:PRK12323  442 RGPGGAPAPAPAPAAAPAAAARPAAAG----PRPVAAAAAAAPARAAP-------AAAPAPADDDPPPWEELPPEFASPA 510


                  .
gi 1387275027 318 P 318
Cdd:PRK12323  511 P 511
PHA03378 PHA03378
EBNA-3B; Provisional
 165-320 4.71e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 39.67  E-value: 4.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 165 AAAPSPVMGSMAPSDAM-----ASGPMAPSffQGPPGSQPSPYNPNAPMMGPHVQPFMSPRFPGGPRptlrmPSQPPVGL 239
Cdd:PHA03378  698 PRAPTPMRPPAAPPGRAqrpaaATGRARPP--AAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPG-----RARPPAAA 770

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027 240 PGS-QPLLPGTMEPSPRAQGHSSMGPMQRvtPPRGMTSVGPQVRAGPGDWG----------VSGAAPAKPALTAPLPSQS 308
Cdd:PHA03378  771 PGApTPQPPPQAPPAPQQRPRGAPTPQPP--PQAGPTSMQLMPRAAPGQQGptkqilrqllTGGVKRGRPSLKKPAALER 848

                         170
                  ....*....|..
gi 1387275027 309 YGGGGMRPPPNS 320
Cdd:PHA03378  849 QAAAGPTPSPGS 860
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 164-343 6.18e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 39.38  E-value: 6.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027  164 AAAAPSPVMGSMAPSDAMASGPMAPSFFQGPPGSQPSPYNPNAPMMGPHVQPFMSPRFPGGPRPTLRMPSQPPVGLPGSQ 243
Cdd:PHA03307   118 PPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPST 197

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387275027  244 PLLPGTMEPSPR----AQGHSSMGPM---QRVTPPRGMTSVGPQVRAGPGDWGVSGAAPAKPALTAPLPSQSYGGGGMRP 316
Cdd:PHA03307   198 PPAAASPRPPRRsspiSASASSPAPApgrSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNG 277

                          170       180
                   ....*....|....*....|....*..
gi 1387275027  317 PPnslAGPGLPTMNMGPGVRGPWASPS 343
Cdd:PHA03307   278 PS---SRPGPASSSSSPRERSPSPSPS 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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