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Conserved domains on  [gi|1370451640|ref|XP_024308254|]
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nuclear migration protein nudC isoform X1 [Homo sapiens]

Protein Classification

NuDC and p23_mNUDC_like domain-containing protein( domain architecture ID 10981299)

protein containing domains Nudc_N, NuDC, and p23_mNUDC_like

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
p23_mNUDC_like cd06492
p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. ...
 176-262 1.72e-59

p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.


:

Pssm-ID: 107241  Cd Length: 87  Bit Score: 185.62  E-value: 1.72e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451640 176 YRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKM 255
Cdd:cd06492     1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKINKM 80


                  ....*..
gi 1370451640 256 EWWSRLV 262
Cdd:cd06492    81 EWWSRLV 87
NuDC pfam16273
Nuclear distribution C domain; This domain, approximately 40-50 residues in length, is mainly ...
 100-145 1.14e-15

Nuclear distribution C domain; This domain, approximately 40-50 residues in length, is mainly found in nuclear migration proteins in various Mammalia species. It may play a role not only in mitosis and cytokinesis, but also in interkinetic nuclear migration and neuronal migration during neocortical development.


:

Pssm-ID: 465078  Cd Length: 66  Bit Score: 70.51  E-value: 1.14e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1370451640 100 KSETSGPQIKELTDEEAERLQLEIDQKKDAENHEAQLKNGSLDSPG 145
Cdd:pfam16273   1 KQEEDGPKIKELTDEEAEKLQLELDQKKKKEEKKKQAKAASAAEDS 46
Nudc_N super family cl16569
N-terminal conserved domain of Nudc; The N-terminus of nuclear distribution gene C homolog ...
 32-63 2.56e-06

N-terminal conserved domain of Nudc; The N-terminus of nuclear distribution gene C homolog (NUDC) proteins contains a highly conserved region consisting of a predicted three helix bundle. In the human homolog this segment has been targeted for structure determination by the Joint Center for Structural Genomics. NUDC forms a complex with other NUD proteins and is involved in several cellular division activities. Recently it was shown that NUDC regulates platelet-activating factor (PAF) acetylhydrolase with PAF being a pro-inflammatory secondary lipidic messenger.


The actual alignment was detected with superfamily member pfam14050:

Pssm-ID: 464073  Cd Length: 60  Bit Score: 44.09  E-value: 2.56e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1370451640  32 LVNTFFSFLRRKTDFF---------IGGEEGMAEKLITQTF 63
Cdd:pfam14050  19 FLDAFFGFLYRRTDFYhvmldpddkMGFPPGVAEKLVLKAF 59
tRNA_synt_2f super family cl47719
Glycyl-tRNA synthetase beta subunit;
52-97 5.77e-03

Glycyl-tRNA synthetase beta subunit;


The actual alignment was detected with superfamily member pfam02092:

Pssm-ID: 460442  Cd Length: 536  Bit Score: 38.54  E-value: 5.77e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1370451640  52 EGMAEKLITQTFshHNQL---AQKTRREKR-ARQEAERREKAERAARLAK 97
Cdd:pfam02092 336 ESRVEKLKKVVF--QEKLgtlADKVERIEAlAAYLAEQLGDAERAALLAK 383
 
Name Accession Description Interval E-value
p23_mNUDC_like cd06492
p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. ...
 176-262 1.72e-59

p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.


Pssm-ID: 107241  Cd Length: 87  Bit Score: 185.62  E-value: 1.72e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451640 176 YRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKM 255
Cdd:cd06492     1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKINKM 80


                  ....*..
gi 1370451640 256 EWWSRLV 262
Cdd:cd06492    81 EWWSRLV 87
CS pfam04969
CS domain; The CS and CHORD (pfam04968) are fused into a single polypeptide chain in metazoans ...
 174-251 1.27e-21

CS domain; The CS and CHORD (pfam04968) are fused into a single polypeptide chain in metazoans but are found in separate proteins in plants; this is thought to be indicative of an interaction between CS and CHORD. It has been suggested that the CS domain is a binding module for HSP90, implying that CS domain-containing proteins are involved in recruiting heat shock proteins to multiprotein assemblies. Two CS domains are found at the N-terminus of Ubiquitin carboxyl-terminal hydrolase 19 (USP19), these domains may play a role in the interaction of USP19 with cellular inhibitor of apoptosis 2.


Pssm-ID: 461503  Cd Length: 76  Bit Score: 86.93  E-value: 1.27e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370451640 174 PNYRWTQTLSELDLAVPFcVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVtVHLEK 251
Cdd:pfam04969   1 PRYDWYQTLDEVTITIPV-KGAGIKKKDVKVNIKPRSLKVKIKGGYELIDGELFHPIDPEESSWTIEGKKVE-ITLKK 76
NuDC pfam16273
Nuclear distribution C domain; This domain, approximately 40-50 residues in length, is mainly ...
 100-145 1.14e-15

Nuclear distribution C domain; This domain, approximately 40-50 residues in length, is mainly found in nuclear migration proteins in various Mammalia species. It may play a role not only in mitosis and cytokinesis, but also in interkinetic nuclear migration and neuronal migration during neocortical development.


Pssm-ID: 465078  Cd Length: 66  Bit Score: 70.51  E-value: 1.14e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1370451640 100 KSETSGPQIKELTDEEAERLQLEIDQKKDAENHEAQLKNGSLDSPG 145
Cdd:pfam16273   1 KQEEDGPKIKELTDEEAEKLQLELDQKKKKEEKKKQAKAASAAEDS 46
Nudc_N pfam14050
N-terminal conserved domain of Nudc; The N-terminus of nuclear distribution gene C homolog ...
 32-63 2.56e-06

N-terminal conserved domain of Nudc; The N-terminus of nuclear distribution gene C homolog (NUDC) proteins contains a highly conserved region consisting of a predicted three helix bundle. In the human homolog this segment has been targeted for structure determination by the Joint Center for Structural Genomics. NUDC forms a complex with other NUD proteins and is involved in several cellular division activities. Recently it was shown that NUDC regulates platelet-activating factor (PAF) acetylhydrolase with PAF being a pro-inflammatory secondary lipidic messenger.


Pssm-ID: 464073  Cd Length: 60  Bit Score: 44.09  E-value: 2.56e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1370451640  32 LVNTFFSFLRRKTDFF---------IGGEEGMAEKLITQTF 63
Cdd:pfam14050  19 FLDAFFGFLYRRTDFYhvmldpddkMGFPPGVAEKLVLKAF 59
PLN02316 PLN02316
synthase/transferase
 43-120 3.72e-04

synthase/transferase


Pssm-ID: 215180 [Multi-domain]  Cd Length: 1036  Bit Score: 42.55  E-value: 3.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451640   43 KTDFFIGGEEGMAEklitqtFSHHNQLAQKTRRE--KRARQEAERREKAERAARLAKE-AKSETSGPQIKELTDEEAERL 119
Cdd:PLN02316   230 HKDFCVEIEGGMDE------HSFEDFLLEEKRREleKLAKEEAERERQAEEQRRREEEkAAMEADRAQAKAEVEKRREKL 303


                   .
gi 1370451640  120 Q 120
Cdd:PLN02316   304 Q 304
tRNA_synt_2f pfam02092
Glycyl-tRNA synthetase beta subunit;
52-97 5.77e-03

Glycyl-tRNA synthetase beta subunit;


Pssm-ID: 460442  Cd Length: 536  Bit Score: 38.54  E-value: 5.77e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1370451640  52 EGMAEKLITQTFshHNQL---AQKTRREKR-ARQEAERREKAERAARLAK 97
Cdd:pfam02092 336 ESRVEKLKKVVF--QEKLgtlADKVERIEAlAAYLAEQLGDAERAALLAK 383
 
Name Accession Description Interval E-value
p23_mNUDC_like cd06492
p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. ...
 176-262 1.72e-59

p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.


Pssm-ID: 107241  Cd Length: 87  Bit Score: 185.62  E-value: 1.72e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451640 176 YRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKM 255
Cdd:cd06492     1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKINKM 80


                  ....*..
gi 1370451640 256 EWWSRLV 262
Cdd:cd06492    81 EWWSRLV 87
p23_NUDC_like cd06467
p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) ...
 176-262 3.10e-37

p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation. This group also includes the human broadly immunogenic tumor associated antigen, CML66, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of CML66 is limited to testis and heart.


Pssm-ID: 107224  Cd Length: 85  Bit Score: 128.43  E-value: 3.10e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451640 176 YRWTQTLSELDLAVPFCVNFrlKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKM 255
Cdd:cd06467     1 YSWTQTLDEVTVTIPLPEGT--KSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNEG 78


                  ....*..
gi 1370451640 256 EWWSRLV 262
Cdd:cd06467    79 EWWPSLV 85
CS pfam04969
CS domain; The CS and CHORD (pfam04968) are fused into a single polypeptide chain in metazoans ...
 174-251 1.27e-21

CS domain; The CS and CHORD (pfam04968) are fused into a single polypeptide chain in metazoans but are found in separate proteins in plants; this is thought to be indicative of an interaction between CS and CHORD. It has been suggested that the CS domain is a binding module for HSP90, implying that CS domain-containing proteins are involved in recruiting heat shock proteins to multiprotein assemblies. Two CS domains are found at the N-terminus of Ubiquitin carboxyl-terminal hydrolase 19 (USP19), these domains may play a role in the interaction of USP19 with cellular inhibitor of apoptosis 2.


Pssm-ID: 461503  Cd Length: 76  Bit Score: 86.93  E-value: 1.27e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370451640 174 PNYRWTQTLSELDLAVPFcVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVtVHLEK 251
Cdd:pfam04969   1 PRYDWYQTLDEVTITIPV-KGAGIKKKDVKVNIKPRSLKVKIKGGYELIDGELFHPIDPEESSWTIEGKKVE-ITLKK 76
p23_like cd06463
Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) ...
 178-262 1.43e-19

Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). hB-ind1 plays a role in the signaling pathway mediated by the small GTPase Rac1, NUDC is needed for nuclear movement, Melusin interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells.


Pssm-ID: 107220  Cd Length: 84  Bit Score: 81.56  E-value: 1.43e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451640 178 WTQTLSELDLAVPFCVNFrlkGKDMVVDIQRRHLRVGLK---GQPAIIDGELYNEVKVEESSWLIEDGKVVtVHLEKINK 254
Cdd:cd06463     1 WYQTLDEVTITIPLKDVT---KKDVKVEFTPKSLTVSVKgggGKEYLLEGELFGPIDPEESKWTVEDRKIE-ITLKKKEP 76


                  ....*...
gi 1370451640 255 MEWWSRLV 262
Cdd:cd06463    77 GEWWPRLE 84
NuDC pfam16273
Nuclear distribution C domain; This domain, approximately 40-50 residues in length, is mainly ...
 100-145 1.14e-15

Nuclear distribution C domain; This domain, approximately 40-50 residues in length, is mainly found in nuclear migration proteins in various Mammalia species. It may play a role not only in mitosis and cytokinesis, but also in interkinetic nuclear migration and neuronal migration during neocortical development.


Pssm-ID: 465078  Cd Length: 66  Bit Score: 70.51  E-value: 1.14e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1370451640 100 KSETSGPQIKELTDEEAERLQLEIDQKKDAENHEAQLKNGSLDSPG 145
Cdd:pfam16273   1 KQEEDGPKIKELTDEEAEKLQLELDQKKKKEEKKKQAKAASAAEDS 46
p23_NUDCD3_like cd06495
p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing ...
 170-269 1.52e-10

p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.


Pssm-ID: 107244  Cd Length: 102  Bit Score: 57.58  E-value: 1.52e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451640 170 GADLPNYRWTQTLSELDLAVPFCVNFrLKGKDMVVDIQRRHLRVGLK---GQPAIIDGELYNEVKVEESSWLIEDGKVVT 246
Cdd:cd06495     1 GAVRENYTWSQDYTDVEVRVPVPKDV-VKGRQVSVDLQSSSIRVSVRdggGEKVLMEGEFTHKINTENSLWSLEPGKCVL 79

                          90       100
                  ....*....|....*....|...
gi 1370451640 247 VHLEKINKMeWWSRLVSSDPEIN 269
Cdd:cd06495    80 LSLSKCSEV-WWNAVLKGEEEID 101
p23_NUDCD1_like cd06493
p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear ...
 176-262 7.69e-09

p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.


Pssm-ID: 107242  Cd Length: 85  Bit Score: 52.14  E-value: 7.69e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451640 176 YRWTQTlsELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKM 255
Cdd:cd06493     1 YYWQQT--EEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDEG 78


                  ....*..
gi 1370451640 256 EWWSRLV 262
Cdd:cd06493    79 PTWPELV 85
Nudc_N pfam14050
N-terminal conserved domain of Nudc; The N-terminus of nuclear distribution gene C homolog ...
 32-63 2.56e-06

N-terminal conserved domain of Nudc; The N-terminus of nuclear distribution gene C homolog (NUDC) proteins contains a highly conserved region consisting of a predicted three helix bundle. In the human homolog this segment has been targeted for structure determination by the Joint Center for Structural Genomics. NUDC forms a complex with other NUD proteins and is involved in several cellular division activities. Recently it was shown that NUDC regulates platelet-activating factor (PAF) acetylhydrolase with PAF being a pro-inflammatory secondary lipidic messenger.


Pssm-ID: 464073  Cd Length: 60  Bit Score: 44.09  E-value: 2.56e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1370451640  32 LVNTFFSFLRRKTDFF---------IGGEEGMAEKLITQTF 63
Cdd:pfam14050  19 FLDAFFGFLYRRTDFYhvmldpddkMGFPPGVAEKLVLKAF 59
p23_NUDCD2_like cd06494
p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 ...
 177-254 3.11e-06

p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.


Pssm-ID: 107243  Cd Length: 93  Bit Score: 44.75  E-value: 3.11e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370451640 177 RWTQTLSELDLAVPfcVNFRLKGKDMVVDIQRRHLRVGLKGQpAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINK 254
Cdd:cd06494     9 CWYQTMDEVFIEVN--VPPGTRAKDVKCKLGSRDISLAVKGQ-EVLKGKLFDSVVADECTWTLEDRKLIRIVLTKSNR 83
ACD_sHsps_p23-like cd00298
This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small ...
 178-251 4.41e-05

This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR).


Pssm-ID: 107219  Cd Length: 80  Bit Score: 41.42  E-value: 4.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451640 178 WTQTLSELDLAVPfcvnfrLKG---KDMVVDIQRRHLRVGLKGQPA----------IIDGELYNEVKVEESSWLIEDGkV 244
Cdd:cd00298     1 WYQTDDEVVVTVD------LPGvkkEDIKVEVEDNVLTISGKREEEeerersygefERSFELPEDVDPEKSKASLENG-V 73


                  ....*..
gi 1370451640 245 VTVHLEK 251
Cdd:cd00298    74 LEITLPK 80
PLN02316 PLN02316
synthase/transferase
 43-120 3.72e-04

synthase/transferase


Pssm-ID: 215180 [Multi-domain]  Cd Length: 1036  Bit Score: 42.55  E-value: 3.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451640   43 KTDFFIGGEEGMAEklitqtFSHHNQLAQKTRRE--KRARQEAERREKAERAARLAKE-AKSETSGPQIKELTDEEAERL 119
Cdd:PLN02316   230 HKDFCVEIEGGMDE------HSFEDFLLEEKRREleKLAKEEAERERQAEEQRRREEEkAAMEADRAQAKAEVEKRREKL 303


                   .
gi 1370451640  120 Q 120
Cdd:PLN02316   304 Q 304
tRNA_synt_2f pfam02092
Glycyl-tRNA synthetase beta subunit;
52-97 5.77e-03

Glycyl-tRNA synthetase beta subunit;


Pssm-ID: 460442  Cd Length: 536  Bit Score: 38.54  E-value: 5.77e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1370451640  52 EGMAEKLITQTFshHNQL---AQKTRREKR-ARQEAERREKAERAARLAK 97
Cdd:pfam02092 336 ESRVEKLKKVVF--QEKLgtlADKVERIEAlAAYLAEQLGDAERAALLAK 383
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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