|
Name |
Accession |
Description |
Interval |
E-value |
| Not3 |
pfam04065 |
Not1 N-terminal domain, CCR4-Not complex component; |
3-229 |
1.75e-130 |
|
Not1 N-terminal domain, CCR4-Not complex component;
:
Pssm-ID: 461155 [Multi-domain] Cd Length: 228 Bit Score: 386.13 E-value: 1.75e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 3 DKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVASNEIKDKRQLIENRK 82
Cdd:pfam04065 1 AARKLQQEIDRTLKKVAEGLEEFDDIYEKLESATNSSQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENRK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 83 LIETQMERFKVVERETKTKAYSKEGLGLAQ--KVDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRkKKGDK 160
Cdd:pfam04065 81 LIEEAMERFKAVEKESKTKAFSKEGLSLAAasKLDPKEKEKAEARDWLSDSIDELNRQIEALEAEIESLQAQKK-KKKKD 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039778100 161 DKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDL 229
Cdd:pfam04065 160 SEKARLEELEKLIERHKFHIEKLELILRLLENGELDPEQVDDIKEDIEYYVESNQDPDFVEDEDIYDDL 228
|
|
| NOT2_3_5 |
pfam04153 |
NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that ... |
618-743 |
1.03e-56 |
|
NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5.
:
Pssm-ID: 461199 Cd Length: 121 Bit Score: 188.96 E-value: 1.03e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 618 AAWHHMPHPSDSERIRQYLPRNPCPTPpyhhQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFH 697
Cdd:pfam04153 1 YSTFNSPWPLDAERPYEPDFRNPACYP----QEPLPRLESPEKFSKFDDETLFYIFYSMPGDYAQYLAAKELKKRSWRYH 76
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1039778100 698 TKYMMWFQRHEEPKTITDEFEQGTYIYFDYeKWGQRKKEGFTFEYR 743
Cdd:pfam04153 77 KKLRTWFTRDEEPKVITNEYERGTYIYFDY-TWEQRRKKDFTLDYE 121
|
|
| Herpes_BLLF1 super family |
cl37540 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
297-564 |
2.57e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
The actual alignment was detected with superfamily member pfam05109:
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 47.99 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 297 SQSPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPTTSALSSTPgnNGASTPAAPTSALGPKASPAPSHNSGTPapyAQAVA 376
Cdd:pfam05109 491 SPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTP--NATSPTLGKTSPTSAVTTPTPNATSPTP---AVTTP 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 377 PPNASGPSNAQPRPPSAqpSGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVTLSSS------GGSSASS 450
Cdd:pfam05109 566 TPNATIPTLGKTSPTSA--VTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTtgqhniTSSSTSS 643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 451 QALGPTSGPHNPAPSTSKESSTAAPsgagnvASGSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTL--LNGPPQFST 528
Cdd:pfam05109 644 MSLRPSSISETLSPSTSDNSTSHMP------LLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTsqASGPGNSST 717
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1039778100 529 TPEikaPEPLSSLKSMAERAAIS----SGIEDPVPTLHLT 564
Cdd:pfam05109 718 STK---PGEVNVTKGTPPKNATSpqapSGQKTAVPTVTST 754
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Not3 |
pfam04065 |
Not1 N-terminal domain, CCR4-Not complex component; |
3-229 |
1.75e-130 |
|
Not1 N-terminal domain, CCR4-Not complex component;
Pssm-ID: 461155 [Multi-domain] Cd Length: 228 Bit Score: 386.13 E-value: 1.75e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 3 DKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVASNEIKDKRQLIENRK 82
Cdd:pfam04065 1 AARKLQQEIDRTLKKVAEGLEEFDDIYEKLESATNSSQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENRK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 83 LIETQMERFKVVERETKTKAYSKEGLGLAQ--KVDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRkKKGDK 160
Cdd:pfam04065 81 LIEEAMERFKAVEKESKTKAFSKEGLSLAAasKLDPKEKEKAEARDWLSDSIDELNRQIEALEAEIESLQAQKK-KKKKD 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039778100 161 DKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDL 229
Cdd:pfam04065 160 SEKARLEELEKLIERHKFHIEKLELILRLLENGELDPEQVDDIKEDIEYYVESNQDPDFVEDEDIYDDL 228
|
|
| NOT2_3_5 |
pfam04153 |
NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that ... |
618-743 |
1.03e-56 |
|
NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5.
Pssm-ID: 461199 Cd Length: 121 Bit Score: 188.96 E-value: 1.03e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 618 AAWHHMPHPSDSERIRQYLPRNPCPTPpyhhQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFH 697
Cdd:pfam04153 1 YSTFNSPWPLDAERPYEPDFRNPACYP----QEPLPRLESPEKFSKFDDETLFYIFYSMPGDYAQYLAAKELKKRSWRYH 76
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1039778100 698 TKYMMWFQRHEEPKTITDEFEQGTYIYFDYeKWGQRKKEGFTFEYR 743
Cdd:pfam04153 77 KKLRTWFTRDEEPKVITNEYERGTYIYFDY-TWEQRRKKDFTLDYE 121
|
|
| CDC36 |
COG5601 |
General negative regulator of transcription subunit [Transcription]; |
643-746 |
4.17e-14 |
|
General negative regulator of transcription subunit [Transcription];
Pssm-ID: 227888 Cd Length: 172 Bit Score: 70.78 E-value: 4.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 643 TPPYHHQMPPPHSDTVEFYQR----LSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMW--FQRHEEPKTITDE 716
Cdd:COG5601 64 LPNCYPNAPNPPIFKVNIEDMkmdnFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWltFNPGMSPATADHV 143
|
90 100 110
....*....|....*....|....*....|
gi 1039778100 717 FEQGTYIYFDYEKWGQRKKEgFTFEYRYLE 746
Cdd:COG5601 144 KERGSYVFFDPFSWSKVSLD-FLLDYKAVR 172
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
8-216 |
1.83e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 8 QGEID----------RCLKKVSeGVEQFEDIWQKLhnaananqkekyeADLKKEIK-KLQRLRDQIKtwvASNEIKDkrq 76
Cdd:PRK03918 134 QGEIDailesdesreKVVRQIL-GLDDYENAYKNL-------------GEVIKEIKrRIERLEKFIK---RTENIEE--- 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 77 lienrkLIETQMERFKVVERETKTKaySKEGLGLAQKVDPAQKEKEEVGQwLTNTIDTLNMQVDQFESEVESLsvqtrkk 156
Cdd:PRK03918 194 ------LIKEKEKELEEVLREINEI--SSELPELREELEKLEKEVKELEE-LKEEIEELEKELESLEGSKRKL------- 257
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 157 kgdkdkQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQD 216
Cdd:PRK03918 258 ------EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE 311
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
297-564 |
2.57e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 47.99 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 297 SQSPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPTTSALSSTPgnNGASTPAAPTSALGPKASPAPSHNSGTPapyAQAVA 376
Cdd:pfam05109 491 SPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTP--NATSPTLGKTSPTSAVTTPTPNATSPTP---AVTTP 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 377 PPNASGPSNAQPRPPSAqpSGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVTLSSS------GGSSASS 450
Cdd:pfam05109 566 TPNATIPTLGKTSPTSA--VTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTtgqhniTSSSTSS 643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 451 QALGPTSGPHNPAPSTSKESSTAAPsgagnvASGSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTL--LNGPPQFST 528
Cdd:pfam05109 644 MSLRPSSISETLSPSTSDNSTSHMP------LLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTsqASGPGNSST 717
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1039778100 529 TPEikaPEPLSSLKSMAERAAIS----SGIEDPVPTLHLT 564
Cdd:pfam05109 718 STK---PGEVNVTKGTPPKNATSpqapSGQKTAVPTVTST 754
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
314-657 |
2.11e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 314 PQSPAVPPTYPSGPPPTTSALSSTPGNNGASTPAAPTSALGPKASPAPSHNSGTPAPYA------------------QAV 375
Cdd:PHA03247 2577 PSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAAnepdphppptvppperprDDP 2656
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 376 APPNASGPSNAQ--------------PRPPSA---------------QPSGGSGGGSGGSSSNSNSGTGGGAGKQNGATS 426
Cdd:PHA03247 2657 APGRVSRPRRARrlgraaqassppqrPRRRAArptvgsltsladpppPPPTPEPAPHALVSATPLPPGPAAARQASPALP 2736
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 427 YSSVVADSPAEVTLSSSGGSSASSQAlgpTSGPHNPAPSTSKESSTAAPSGAGNVASGSGNNSGGPSLLVPLPVNPPSSP 506
Cdd:PHA03247 2737 AAPAPPAVPAGPATPGGPARPARPPT---TAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLA 2813
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 507 TPSFSEAKAAGTLLNGPPQFST-TPEIKAPEPLSSLKSM----------AERAAISSGIEDPVPTLHLTDRDIilsstsa 575
Cdd:PHA03247 2814 PAAALPPAASPAGPLPPPTSAQpTAPPPPPGPPPPSLPLggsvapggdvRRRPPSRSPAAKPAAPARPPVRRL------- 2886
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 576 pptsSQPPLQLSEVNIPLSlgvcPLGPVSLTKEQLYQQAMEEAAWHHMPhpsdserirqyLPRNPCPTPPYHHQMPPPHS 655
Cdd:PHA03247 2887 ----ARPAVSRSTESFALP----PDQPERPPQPQAPPPPQPQPQPPPPP-----------QPQPPPPPPPRPQPPLAPTT 2947
|
..
gi 1039778100 656 DT 657
Cdd:PHA03247 2948 DP 2949
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
3-149 |
4.68e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 4.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 3 DKRKLQGEIDRCLKKVSEGVEQFEDIwqklhnaananqkEKYEADLKKEIKKLQRLRDQIKTWVA--SNEIKD-KRQLIE 79
Cdd:TIGR04523 420 EKELLEKEIERLKETIIKNNSEIKDL-------------TNQDSVKELIIKNLDNTRESLETQLKvlSRSINKiKQNLEQ 486
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 80 NRKLIETQMERFKVVERETKTkayskeglgLAQKVDPAQKEKEEvgqwLTNTIDTLNMQVDQFESEVESL 149
Cdd:TIGR04523 487 KQKELKSKEKELKKLNEEKKE---------LEEKVKDLTKKISS----LKEKIEKLESEKKEKESKISDL 543
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
338-491 |
6.58e-03 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 39.63 E-value: 6.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 338 PGNNGASTPAAPTSALGpkasPAPSHNSGTPAPYAQAVAPPNASGPSnaqpRPPSAQPSGGSGGGSGGSSSNSNSGTGGG 417
Cdd:COG5164 48 AQNQGSTTPAGNTGGTR----PAGNQGATGPAQNQGGTTPAQNQGGT----RPAGNTGGTTPAGDGGATGPPDDGGATGP 119
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039778100 418 AGKqNGATSYSSVVADSPAEVTlsssGGSSASSQALGPT--SGPHNPAPSTSKESSTAAPSGAGNVASGSGNNSGG 491
Cdd:COG5164 120 PDD-GGSTTPPSGGSTTPPGDG----GSTPPGPGSTGPGgsTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPNKGE 190
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Not3 |
pfam04065 |
Not1 N-terminal domain, CCR4-Not complex component; |
3-229 |
1.75e-130 |
|
Not1 N-terminal domain, CCR4-Not complex component;
Pssm-ID: 461155 [Multi-domain] Cd Length: 228 Bit Score: 386.13 E-value: 1.75e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 3 DKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVASNEIKDKRQLIENRK 82
Cdd:pfam04065 1 AARKLQQEIDRTLKKVAEGLEEFDDIYEKLESATNSSQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENRK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 83 LIETQMERFKVVERETKTKAYSKEGLGLAQ--KVDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRkKKGDK 160
Cdd:pfam04065 81 LIEEAMERFKAVEKESKTKAFSKEGLSLAAasKLDPKEKEKAEARDWLSDSIDELNRQIEALEAEIESLQAQKK-KKKKD 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039778100 161 DKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDL 229
Cdd:pfam04065 160 SEKARLEELEKLIERHKFHIEKLELILRLLENGELDPEQVDDIKEDIEYYVESNQDPDFVEDEDIYDDL 228
|
|
| NOT2_3_5 |
pfam04153 |
NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that ... |
618-743 |
1.03e-56 |
|
NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5.
Pssm-ID: 461199 Cd Length: 121 Bit Score: 188.96 E-value: 1.03e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 618 AAWHHMPHPSDSERIRQYLPRNPCPTPpyhhQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFH 697
Cdd:pfam04153 1 YSTFNSPWPLDAERPYEPDFRNPACYP----QEPLPRLESPEKFSKFDDETLFYIFYSMPGDYAQYLAAKELKKRSWRYH 76
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1039778100 698 TKYMMWFQRHEEPKTITDEFEQGTYIYFDYeKWGQRKKEGFTFEYR 743
Cdd:pfam04153 77 KKLRTWFTRDEEPKVITNEYERGTYIYFDY-TWEQRRKKDFTLDYE 121
|
|
| CDC36 |
COG5601 |
General negative regulator of transcription subunit [Transcription]; |
643-746 |
4.17e-14 |
|
General negative regulator of transcription subunit [Transcription];
Pssm-ID: 227888 Cd Length: 172 Bit Score: 70.78 E-value: 4.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 643 TPPYHHQMPPPHSDTVEFYQR----LSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMW--FQRHEEPKTITDE 716
Cdd:COG5601 64 LPNCYPNAPNPPIFKVNIEDMkmdnFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWltFNPGMSPATADHV 143
|
90 100 110
....*....|....*....|....*....|
gi 1039778100 717 FEQGTYIYFDYEKWGQRKKEgFTFEYRYLE 746
Cdd:COG5601 144 KERGSYVFFDPFSWSKVSLD-FLLDYKAVR 172
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
8-216 |
1.83e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 8 QGEID----------RCLKKVSeGVEQFEDIWQKLhnaananqkekyeADLKKEIK-KLQRLRDQIKtwvASNEIKDkrq 76
Cdd:PRK03918 134 QGEIDailesdesreKVVRQIL-GLDDYENAYKNL-------------GEVIKEIKrRIERLEKFIK---RTENIEE--- 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 77 lienrkLIETQMERFKVVERETKTKaySKEGLGLAQKVDPAQKEKEEVGQwLTNTIDTLNMQVDQFESEVESLsvqtrkk 156
Cdd:PRK03918 194 ------LIKEKEKELEEVLREINEI--SSELPELREELEKLEKEVKELEE-LKEEIEELEKELESLEGSKRKL------- 257
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 157 kgdkdkQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQD 216
Cdd:PRK03918 258 ------EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE 311
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
297-564 |
2.57e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 47.99 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 297 SQSPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPTTSALSSTPgnNGASTPAAPTSALGPKASPAPSHNSGTPapyAQAVA 376
Cdd:pfam05109 491 SPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTP--NATSPTLGKTSPTSAVTTPTPNATSPTP---AVTTP 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 377 PPNASGPSNAQPRPPSAqpSGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVTLSSS------GGSSASS 450
Cdd:pfam05109 566 TPNATIPTLGKTSPTSA--VTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTtgqhniTSSSTSS 643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 451 QALGPTSGPHNPAPSTSKESSTAAPsgagnvASGSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTL--LNGPPQFST 528
Cdd:pfam05109 644 MSLRPSSISETLSPSTSDNSTSHMP------LLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTsqASGPGNSST 717
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1039778100 529 TPEikaPEPLSSLKSMAERAAIS----SGIEDPVPTLHLT 564
Cdd:pfam05109 718 STK---PGEVNVTKGTPPKNATSpqapSGQKTAVPTVTST 754
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
314-657 |
2.11e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 314 PQSPAVPPTYPSGPPPTTSALSSTPGNNGASTPAAPTSALGPKASPAPSHNSGTPAPYA------------------QAV 375
Cdd:PHA03247 2577 PSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAAnepdphppptvppperprDDP 2656
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 376 APPNASGPSNAQ--------------PRPPSA---------------QPSGGSGGGSGGSSSNSNSGTGGGAGKQNGATS 426
Cdd:PHA03247 2657 APGRVSRPRRARrlgraaqassppqrPRRRAArptvgsltsladpppPPPTPEPAPHALVSATPLPPGPAAARQASPALP 2736
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 427 YSSVVADSPAEVTLSSSGGSSASSQAlgpTSGPHNPAPSTSKESSTAAPSGAGNVASGSGNNSGGPSLLVPLPVNPPSSP 506
Cdd:PHA03247 2737 AAPAPPAVPAGPATPGGPARPARPPT---TAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLA 2813
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 507 TPSFSEAKAAGTLLNGPPQFST-TPEIKAPEPLSSLKSM----------AERAAISSGIEDPVPTLHLTDRDIilsstsa 575
Cdd:PHA03247 2814 PAAALPPAASPAGPLPPPTSAQpTAPPPPPGPPPPSLPLggsvapggdvRRRPPSRSPAAKPAAPARPPVRRL------- 2886
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 576 pptsSQPPLQLSEVNIPLSlgvcPLGPVSLTKEQLYQQAMEEAAWHHMPhpsdserirqyLPRNPCPTPPYHHQMPPPHS 655
Cdd:PHA03247 2887 ----ARPAVSRSTESFALP----PDQPERPPQPQAPPPPQPQPQPPPPP-----------QPQPPPPPPPRPQPPLAPTT 2947
|
..
gi 1039778100 656 DT 657
Cdd:PHA03247 2948 DP 2949
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
342-483 |
2.30e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.59 E-value: 2.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 342 GASTPAAPTSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGGSGGSSSNSnsgtgggagkQ 421
Cdd:PRK07764 389 GGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPP----------P 458
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039778100 422 NGATSYSSVVADSPAEvtlsssggsSASSQALGPTSGPHNPAPSTSKESSTAAPSGAGNVAS 483
Cdd:PRK07764 459 AAAPSAQPAPAPAAAP---------EPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
212-493 |
2.77e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 44.39 E-value: 2.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 212 DSSQDPDFEEN-EFLYDDLDLEDIPQALVATS----------PPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTE 280
Cdd:PHA03307 30 DAADDLLSGSQgQLVSDSAELAAVTVVAGAAAcdrfepptgpPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPP 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 281 NSEDDKKRGRSTDsevsqsPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPTTSALSSTPGNNGASTP--AAPTSALGPKAS 358
Cdd:PHA03307 110 GPSSPDPPPPTPP------PASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSrqAALPLSSPEETA 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 359 PAPSHNSGTPAPYAQAVAPPNASGP--SNAQPRPPSAQPSGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSVvaDSPA 436
Cdd:PHA03307 184 RAPSSPPAEPPPSTPPAAASPRPPRrsSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPL--PRPA 261
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039778100 437 EVTLSSSGGSSASSQALGPTSGP---------HNPAPSTSKESSTAAPSGAGNVASGSGNNSGGPS 493
Cdd:PHA03307 262 PITLPTRIWEASGWNGPSSRPGPassssspreRSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSS 327
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
332-645 |
3.12e-04 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 44.18 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 332 SALSSTPGNNGASTPAA----PTSALGPKASPAPShnsgTPAPYAQAVAPPNASGPSNAQPRPPSAqpsggsgggsggss 407
Cdd:pfam17823 117 AAASSSPSSAAQSLPAAiaalPSEAFSAPRAAACR----ANASAAPRAAIAAASAPHAASPAPRTA-------------- 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 408 snsnsGTGGGAGKQNGATSYSSVVADSPAEVTLSssggssassqalgPTSGPHNPAPSTSKESSTAAPSGAGNVASGSGN 487
Cdd:pfam17823 179 -----ASSTTAASSTTAASSAPTTAASSAPATLT-------------PARGISTAATATGHPAAGTALAAVGNSSPAAGT 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 488 NSGGPSLLVPLPVNPPSSPTPSFseAKAAGTLLNGPPQfSTTPeikAPEPLSSLKSMAERAAISSGIEDPVPTLHLT-DR 566
Cdd:pfam17823 241 VTAAVGTVTPAALATLAAAAGTV--ASAAGTINMGDPH-ARRL---SPAKHMPSDTMARNPAAPMGAQAQGPIIQVStDQ 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 567 DIIlssTSAPPTSSQPPLQLSEVNIPLSLGVCPLGPVSLTKEQLYQQAmeeAAWHHMPHPSDSERIRQYLP-RNPCPTPP 645
Cdd:pfam17823 315 PVH---NTAGEPTPSPSNTTLEPNTPKSVASTNLAVVTTTKAQAKEPS---ASPVPVLHTSMIPEVEATSPtTQPSPLLP 388
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
338-556 |
1.34e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.28 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 338 PGNNGASTPAAPTSALGPKASPAPSHNSGTPAPyAQAVAPPNASGPSNAQPRPPSAQPSGGSGGGSGGSSSNSNSGTGGG 417
Cdd:PRK07764 592 PGAAGGEGPPAPASSGPPEEAARPAAPAAPAAP-AAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWP 670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 418 AGKQNGATSYSSVVADSPAevtlsssggsSASSQALGPTSGPHNPAPSTSKESSTAAPSGAGNVASGSGNNSGGPSLLVP 497
Cdd:PRK07764 671 AKAGGAAPAAPPPAPAPAA----------PAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP 740
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039778100 498 LPVNPPSSPTPSFSEAKAAGTLLNGPPQFSTTPeiKAPEPLSSLKSMAERAAISSGIED 556
Cdd:PRK07764 741 LPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA--PPPSPPSEEEEMAEDDAPSMDDED 797
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
307-666 |
1.44e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 42.23 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 307 PVHSNQHPQSPavpPTYPSGPPPTTSALSSTPGNNGASTPAAPTSALGPkASPAPSHNSGTPAPYAQAVAPPNASGPsnA 386
Cdd:PHA03247 2694 SLTSLADPPPP---PPTPEPAPHALVSATPLPPGPAAARQASPALPAAP-APPAVPAGPATPGGPARPARPPTTAGP--P 2767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 387 QPRPPSAQPSGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVTLSSSGGSSASSQALGPTSGPHNPAPST 466
Cdd:PHA03247 2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP 2847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 467 SKESStaapsgAGNVASGSGNNSGGPSLLVPLPVNPPSSPTpsfseakaAGTLLNGPPQFSTTPEIKAPEPLsslksmaE 546
Cdd:PHA03247 2848 PSLPL------GGSVAPGGDVRRRPPSRSPAAKPAAPARPP--------VRRLARPAVSRSTESFALPPDQP-------E 2906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 547 RAAISSGIEDPVPTlhltdrdiilsSTSAPPTSSQPPLQlsevniPLSLGVCPLGPVSLTKEQLYQQAMEEAAWHHMPHP 626
Cdd:PHA03247 2907 RPPQPQAPPPPQPQ-----------PQPPPPPQPQPPPP------PPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVP 2969
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1039778100 627 SDSERIRQylpRNPCPTPPYHHQMPPPHSDTVEFYQRLST 666
Cdd:PHA03247 2970 GRVAVPRF---RVPQPAPSREAPASSTPPLTGHSLSRVSS 3006
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
314-653 |
2.93e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.46 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 314 PQSPAVpptypsgppPTTSALSSTPGNNGA---STPAAPTSALGPKASP------APSHNSGTPApyaqAVAPPNASGPS 384
Cdd:PHA03247 2554 PLPPAA---------PPAAPDRSVPPPRPAprpSEPAVTSRARRPDAPPqsarprAPVDDRGDPR----GPAPPSPLPPD 2620
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 385 NAQPRPPSAQPSGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSvVADSPAEVTLSSSGGSSASSQALGPTSG------ 458
Cdd:PHA03247 2621 THAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPR-RARRLGRAAQASSPPQRPRRRAARPTVGsltsla 2699
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 459 -PHNPAPSTSKESSTAAPSGAGNVASGSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTLLNGPPQFSTTPEIKAPEP 537
Cdd:PHA03247 2700 dPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP 2779
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 538 ---------------LSSLKSMAERAAISSGIEDPVPTLHLTDRDIILSSTSAPPTSSQPPLQLSEVNIPLSLG--VCPL 600
Cdd:PHA03247 2780 prrltrpavaslsesRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGgsVAPG 2859
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1039778100 601 GPVSltKEQLYQQAMEEAAwhHMPHPSDSERIRQYLPRN--PCPTPPYHHQMPPP 653
Cdd:PHA03247 2860 GDVR--RRPPSRSPAAKPA--APARPPVRRLARPAVSRSteSFALPPDQPERPPQ 2910
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
299-478 |
3.97e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 40.74 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 299 SPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPTTSALSSTPGNNGASTPAAPTSALGPKASPAPS-------HNSGTPAPY 371
Cdd:PRK07764 600 PPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASdggdgwpAKAGGAAPA 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 372 AQAVAPPNASGPSNAQPRPPSAQPsggsgggSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVTLSSSGGSSAssq 451
Cdd:PRK07764 680 APPPAPAPAAPAAPAGAAPAQPAP-------APAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPP--- 749
|
170 180
....*....|....*....|....*..
gi 1039778100 452 ALGPTSGPHNPAPSTSKESSTAAPSGA 478
Cdd:PRK07764 750 DPAGAPAQPPPPPAPAPAAAPAAAPPP 776
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
334-517 |
4.10e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 40.60 E-value: 4.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 334 LSSTPGNNGASTPAAPTSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGGSGGSSSNSNSG 413
Cdd:PRK07003 356 LAFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPAT 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 414 TGGgAGKQNGATSYSSVVADSPAEVTLSSSGGSSASSQALGPTSGPHNPAPSTSKE----------SSTAAPSGAGNVAS 483
Cdd:PRK07003 436 ADR-GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFepapraaapsAATPAAVPDARAPA 514
|
170 180 190
....*....|....*....|....*....|....
gi 1039778100 484 GSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAG 517
Cdd:PRK07003 515 AASREDAPAAAAPPAPEARPPTPAAAAPAARAGG 548
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
3-149 |
4.68e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 4.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 3 DKRKLQGEIDRCLKKVSEGVEQFEDIwqklhnaananqkEKYEADLKKEIKKLQRLRDQIKTWVA--SNEIKD-KRQLIE 79
Cdd:TIGR04523 420 EKELLEKEIERLKETIIKNNSEIKDL-------------TNQDSVKELIIKNLDNTRESLETQLKvlSRSINKiKQNLEQ 486
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 80 NRKLIETQMERFKVVERETKTkayskeglgLAQKVDPAQKEKEEvgqwLTNTIDTLNMQVDQFESEVESL 149
Cdd:TIGR04523 487 KQKELKSKEKELKKLNEEKKE---------LEEKVKDLTKKISS----LKEKIEKLESEKKEKESKISDL 543
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
314-493 |
5.21e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 40.22 E-value: 5.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 314 PQSPAVPPTYPSGPPPTTSALSSTPGNNGASTPAAPTSALGPKASPAP--SHNSGTPAPYAQAVAPPNASGPS--NAQPR 389
Cdd:PRK07003 385 ARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPpaTADRGDDAADGDAPVPAKANARAsaDSRCD 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 390 PPSAQPSGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVTLSSSGGSSASSQALGPTSGPHNPAPSTSKE 469
Cdd:PRK07003 465 ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAA 544
|
170 180 190
....*....|....*....|....*....|.
gi 1039778100 470 SSTAAPSG------AG-NVASGSGNNSGGPS 493
Cdd:PRK07003 545 RAGGAAAAldvlrnAGmRVSSDRGARAAAAA 575
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
339-549 |
5.49e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 40.24 E-value: 5.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 339 GNNGASTPAAPTSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPsggsgggsggsSSNSNSGTGGGA 418
Cdd:PRK12323 367 QSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAP-----------ARRSPAPEALAA 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 419 GKQNGATSYSSVVADSPAEVTLSSSGGSSASSQALGPTSgPHNPAPSTSKESSTAAPSGAGNVASgsgnNSGGPSLLVPL 498
Cdd:PRK12323 436 ARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAA-AAAAAPARAAPAAAPAPADDDPPPW----EELPPEFASPA 510
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1039778100 499 PVNPPSSPTPSFSEAKAAGTLLNGPPQFSTTPEIKAPEPLSSLKSMAERAA 549
Cdd:PRK12323 511 PAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVV 561
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
338-491 |
6.58e-03 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 39.63 E-value: 6.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 338 PGNNGASTPAAPTSALGpkasPAPSHNSGTPAPYAQAVAPPNASGPSnaqpRPPSAQPSGGSGGGSGGSSSNSNSGTGGG 417
Cdd:COG5164 48 AQNQGSTTPAGNTGGTR----PAGNQGATGPAQNQGGTTPAQNQGGT----RPAGNTGGTTPAGDGGATGPPDDGGATGP 119
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039778100 418 AGKqNGATSYSSVVADSPAEVTlsssGGSSASSQALGPT--SGPHNPAPSTSKESSTAAPSGAGNVASGSGNNSGG 491
Cdd:COG5164 120 PDD-GGSTTPPSGGSTTPPGDG----GSTPPGPGSTGPGgsTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPNKGE 190
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
3-153 |
8.59e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 39.62 E-value: 8.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 3 DKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKK-EIKKLQRLRDQIKTWVAS--NEIKDKRQLIE 79
Cdd:TIGR04523 322 KLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQnEIEKLKKENQSYKQEIKNleSQINDLESKIQ 401
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039778100 80 NRKLIETQME-RFKVVERETKTKaySKEGLGLAQKVDPAQKEKEEvgqwLTNTIDTLNMQVDQFESEVESLSVQT 153
Cdd:TIGR04523 402 NQEKLNQQKDeQIKKLQQEKELL--EKEIERLKETIIKNNSEIKD----LTNQDSVKELIIKNLDNTRESLETQL 470
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
295-393 |
9.39e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 39.37 E-value: 9.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039778100 295 EVSQSPAKNGSKPvhSNQHPQSP---AVPPTYPSGPPPTTSALSSTPGNNG-ASTPAAPTSALGPKASPAP-SHNSGTPA 369
Cdd:PRK14971 358 QLAQLTQKGDDAS--GGRGPKQHikpVFTQPAAAPQPSAAAAASPSPSQSSaAAQPSAPQSATQPAGTPPTvSVDPPAAV 435
|
90 100
....*....|....*....|....
gi 1039778100 370 PYAQAVAPPNASGPSNAQPRPPSA 393
Cdd:PRK14971 436 PVNPPSTAPQAVRPAQFKEEKKIP 459
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