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Conserved domains on  [gi|1039730085|ref|XP_017167940|]
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UPF0538 protein C2orf76 homolog isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2340 super family cl10898
Uncharacterized conserved protein (DUF2340); This is a family of small proteins of ...
 14-104 2.15e-40

Uncharacterized conserved protein (DUF2340); This is a family of small proteins of approximately 150 amino acids of unknown function.


The actual alignment was detected with superfamily member pfam10209:

Pssm-ID: 462998  Cd Length: 120  Bit Score: 131.87  E-value: 2.15e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730085  14 LTVRLIRSFEHRNFKPVVYHGVNL-HQTVKEFIIFLKQDVPLRTSLPPPlRNYKYDTLKILHQAHKAKTNELVLGLEDDD 92
Cdd:pfam10209   1 ITVRVIKSFEYRNVKNLVLHNVDLtTTTVKDLKELVKEEIKTRPGLKPF-RNVKYDTLKIYTKAHGSKTNNLVINLDHDD 79

                          90
                  ....*....|...
gi 1039730085  93 TLLLK-EDRTLKD 104
Cdd:pfam10209  80 DWILDdDDKTLAE 92
 
Name Accession Description Interval E-value
DUF2340 pfam10209
Uncharacterized conserved protein (DUF2340); This is a family of small proteins of ...
 14-104 2.15e-40

Uncharacterized conserved protein (DUF2340); This is a family of small proteins of approximately 150 amino acids of unknown function.


Pssm-ID: 462998  Cd Length: 120  Bit Score: 131.87  E-value: 2.15e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730085  14 LTVRLIRSFEHRNFKPVVYHGVNL-HQTVKEFIIFLKQDVPLRTSLPPPlRNYKYDTLKILHQAHKAKTNELVLGLEDDD 92
Cdd:pfam10209   1 ITVRVIKSFEYRNVKNLVLHNVDLtTTTVKDLKELVKEEIKTRPGLKPF-RNVKYDTLKIYTKAHGSKTNNLVINLDHDD 79

                          90
                  ....*....|...
gi 1039730085  93 TLLLK-EDRTLKD 104
Cdd:pfam10209  80 DWILDdDDKTLAE 92
 
Name Accession Description Interval E-value
DUF2340 pfam10209
Uncharacterized conserved protein (DUF2340); This is a family of small proteins of ...
 14-104 2.15e-40

Uncharacterized conserved protein (DUF2340); This is a family of small proteins of approximately 150 amino acids of unknown function.


Pssm-ID: 462998  Cd Length: 120  Bit Score: 131.87  E-value: 2.15e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730085  14 LTVRLIRSFEHRNFKPVVYHGVNL-HQTVKEFIIFLKQDVPLRTSLPPPlRNYKYDTLKILHQAHKAKTNELVLGLEDDD 92
Cdd:pfam10209   1 ITVRVIKSFEYRNVKNLVLHNVDLtTTTVKDLKELVKEEIKTRPGLKPF-RNVKYDTLKIYTKAHGSKTNNLVINLDHDD 79

                          90
                  ....*....|...
gi 1039730085  93 TLLLK-EDRTLKD 104
Cdd:pfam10209  80 DWILDdDDKTLAE 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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