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Conserved domains on  [gi|1370455403|ref|XP_016858404|]
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rootletin isoform X6 [Homo sapiens]

Protein Classification

Rootletin and Smc domain-containing protein( domain architecture ID 13865865)

protein containing domains Rootletin, Smc, and SMC_prok_B

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rootletin pfam15035
Ciliary rootlet component, centrosome cohesion;
290-466 8.31e-57

Ciliary rootlet component, centrosome cohesion;


:

Pssm-ID: 464459 [Multi-domain]  Cd Length: 190  Bit Score: 195.26  E-value: 8.31e-57
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  290 RRKLQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLLERSGELEQQRL-------------RDTEHSQDLESALIRL 356
Cdd:pfam15035    1 RRKLQAYQEAQQRQAQLVQKLQAKVLQYKKRCSELEQQLLEKTSELEKTELllrkltleprlqrLEREHSADLEEALIRL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  357 EEEQQRSASLAQVNAMLREQLDQAGSANQALSEDIRKVTNDWTRCRKELEHREAAWRREEESFNAYFSNEHSRLLLLWRQ 436
Cdd:pfam15035   81 EEERQRSESLSQVNSLLREQLEQASRANEALREDLQKLTNDWERAREELEQKESEWRKEEEAFNEYLSSEHSRLLSLWRE 160

                          170       180       190
                   ....*....|....*....|....*....|
gi 1370455403  437 VVGFRRLVSEVKMFTERDLLQLGGELARTS 466
Cdd:pfam15035  161 VVAVRRQFTELKTATERDLSELKTEFSRTS 190
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 664-1222 7.92e-26

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 116.57  E-value: 7.92e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  664 KRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLA 743
Cdd:COG1196    222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE 301

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  744 HSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREAL 823
Cdd:COG1196    302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  824 SRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSAL 903
Cdd:COG1196    382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  904 QGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEgslRVAEQAQEALEQQLPTLRHERSQLQEQLAQEAAWRELEAER 983
Cdd:COG1196    462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLL---EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA 538

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  984 AqlqsQLQREQEELLARLEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKTALSEklmgtrhSLATISLEME 1063
Cdd:COG1196    539 A----LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAI-------GAAVDLVASD 607

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1064 RQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQEVRRLQEQARDLG-KQRDSCLREAEELRTQLRLLEDARDG 1142
Cdd:COG1196    608 LREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGsLTGGSRRELLAALLEAEAELEELAER 687

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1143 LRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEE 1222
Cdd:COG1196    688 LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER 767
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1105-1901 1.96e-23

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 108.99  E-value: 1.96e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1105 VRRLQEQARDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREA 1184
Cdd:TIGR02168  234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1185 LRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEARTAV-------GKEAGELRTGLQEVERSRLEARRELQELRR 1257
Cdd:TIGR02168  314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLeaeleelEAELEELESRLEELEEQLETLRSKVAQLEL 393

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1258 QMKMLDSENTRLGRELAELQGRLA-LGERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEQEGEFRTRERRL 1336
Cdd:TIGR02168  394 QIASLNNEIERLEARLERLEDRRErLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1337 LGSLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRLSAAEGRAQGLEAELARVEVQ---RRAAEAQLGGLRSALrrg 1413
Cdd:TIGR02168  474 EQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDegyEAAIEAALGGRLQAV--- 550

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1414 lglgrapspaprpvpgspardapaegsgEGLNSPSTLECSPGSQPPSPGPATSPASPDLDPEAVRGALREFLQELRSAQR 1493
Cdd:TIGR02168  551 ----------------------------VVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLG 602

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1494 ERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARR-SVDGRLSGVQAELALQEESVRRsererratldqv 1572
Cdd:TIGR02168  603 VAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIvTLDGDLVRPGGVITGGSAKTNS------------ 670

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1573 atlerSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLGLSDREAQAQAL 1652
Cdd:TIGR02168  671 -----SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1653 QDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTEALAQSSASLNSTRDKNLHLQKALTACEHD 1732
Cdd:TIGR02168  746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1733 RQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQEGEAAALNTVQKLQDERRL 1812
Cdd:TIGR02168  826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1813 LQERLGSLQRALAQLEAekrEVERSALRLEKDRVALRRTLDKVEREKLRSHEDTVRLSAEKgrldrtltgaELELAEAQR 1892
Cdd:TIGR02168  906 LESKRSELRRELEELRE---KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKI----------EDDEEEARR 972


                   ....*....
gi 1370455403 1893 QIQQLEAQV 1901
Cdd:TIGR02168  973 RLKRLENKI 981
PRK11281 super family cl46976
mechanosensitive channel MscK;
176-391 6.22e-04

mechanosensitive channel MscK;


The actual alignment was detected with superfamily member PRK11281:

Pssm-ID: 481316 [Multi-domain]  Cd Length: 1113  Bit Score: 44.90  E-value: 6.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  176 AQITSLPALIREIVTR--NLSQPESPVL---LPATEMASLLSLQEE--NQL--LQQELSRVEDLL--AQSRAERDELAIK 244
Cdd:PRK11281    87 QQLAQAPAKLRQAQAEleALKDDNDEETretLSTLSLRQLESRLAQtlDQLqnAQNDLAEYNSQLvsLQTQPERAQAALY 166

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  245 YNavSERLEQALRLEPGELETQEPrglvrQSVELRRQLQEEQA------SYRRKLQA--------YQ-------EGQQRQ 303
Cdd:PRK11281   167 AN--SQRLQQIRNLLKGGKVGGKA-----LRPSQRVLLQAEQAllnaqnDLQRKSLEgntqlqdlLQkqrdyltARIQRL 239

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  304 AQLVQRLQGKILQykKRCSELEQQLLE-RSGELEQQRLRDTEHSQDLESALI---RLEEEQQRSASLAQVNAMLREQLDQ 379
Cdd:PRK11281   240 EHQLQLLQEAINS--KRLTLSEKTVQEaQSQDEAARIQANPLVAQELEINLQlsqRLLKATEKLNTLTQQNLRVKNWLDR 317

                          250
                   ....*....|..
gi 1370455403  380 AGSANQALSEDI 391
Cdd:PRK11281   318 LTQSERNIKEQI 329
 
Name Accession Description Interval E-value
Rootletin pfam15035
Ciliary rootlet component, centrosome cohesion;
290-466 8.31e-57

Ciliary rootlet component, centrosome cohesion;


Pssm-ID: 464459 [Multi-domain]  Cd Length: 190  Bit Score: 195.26  E-value: 8.31e-57
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  290 RRKLQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLLERSGELEQQRL-------------RDTEHSQDLESALIRL 356
Cdd:pfam15035    1 RRKLQAYQEAQQRQAQLVQKLQAKVLQYKKRCSELEQQLLEKTSELEKTELllrkltleprlqrLEREHSADLEEALIRL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  357 EEEQQRSASLAQVNAMLREQLDQAGSANQALSEDIRKVTNDWTRCRKELEHREAAWRREEESFNAYFSNEHSRLLLLWRQ 436
Cdd:pfam15035   81 EEERQRSESLSQVNSLLREQLEQASRANEALREDLQKLTNDWERAREELEQKESEWRKEEEAFNEYLSSEHSRLLSLWRE 160

                          170       180       190
                   ....*....|....*....|....*....|
gi 1370455403  437 VVGFRRLVSEVKMFTERDLLQLGGELARTS 466
Cdd:pfam15035  161 VVAVRRQFTELKTATERDLSELKTEFSRTS 190
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 664-1222 7.92e-26

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 116.57  E-value: 7.92e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  664 KRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLA 743
Cdd:COG1196    222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE 301

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  744 HSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREAL 823
Cdd:COG1196    302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  824 SRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSAL 903
Cdd:COG1196    382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  904 QGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEgslRVAEQAQEALEQQLPTLRHERSQLQEQLAQEAAWRELEAER 983
Cdd:COG1196    462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLL---EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA 538

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  984 AqlqsQLQREQEELLARLEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKTALSEklmgtrhSLATISLEME 1063
Cdd:COG1196    539 A----LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAI-------GAAVDLVASD 607

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1064 RQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQEVRRLQEQARDLG-KQRDSCLREAEELRTQLRLLEDARDG 1142
Cdd:COG1196    608 LREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGsLTGGSRRELLAALLEAEAELEELAER 687

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1143 LRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEE 1222
Cdd:COG1196    688 LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER 767
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1105-1901 1.96e-23

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 108.99  E-value: 1.96e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1105 VRRLQEQARDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREA 1184
Cdd:TIGR02168  234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1185 LRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEARTAV-------GKEAGELRTGLQEVERSRLEARRELQELRR 1257
Cdd:TIGR02168  314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLeaeleelEAELEELESRLEELEEQLETLRSKVAQLEL 393

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1258 QMKMLDSENTRLGRELAELQGRLA-LGERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEQEGEFRTRERRL 1336
Cdd:TIGR02168  394 QIASLNNEIERLEARLERLEDRRErLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1337 LGSLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRLSAAEGRAQGLEAELARVEVQ---RRAAEAQLGGLRSALrrg 1413
Cdd:TIGR02168  474 EQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDegyEAAIEAALGGRLQAV--- 550

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1414 lglgrapspaprpvpgspardapaegsgEGLNSPSTLECSPGSQPPSPGPATSPASPDLDPEAVRGALREFLQELRSAQR 1493
Cdd:TIGR02168  551 ----------------------------VVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLG 602

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1494 ERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARR-SVDGRLSGVQAELALQEESVRRsererratldqv 1572
Cdd:TIGR02168  603 VAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIvTLDGDLVRPGGVITGGSAKTNS------------ 670

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1573 atlerSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLGLSDREAQAQAL 1652
Cdd:TIGR02168  671 -----SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1653 QDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTEALAQSSASLNSTRDKNLHLQKALTACEHD 1732
Cdd:TIGR02168  746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1733 RQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQEGEAAALNTVQKLQDERRL 1812
Cdd:TIGR02168  826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1813 LQERLGSLQRALAQLEAekrEVERSALRLEKDRVALRRTLDKVEREKLRSHEDTVRLSAEKgrldrtltgaELELAEAQR 1892
Cdd:TIGR02168  906 LESKRSELRRELEELRE---KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKI----------EDDEEEARR 972


                   ....*....
gi 1370455403 1893 QIQQLEAQV 1901
Cdd:TIGR02168  973 RLKRLENKI 981
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 664-1411 3.95e-23

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 107.83  E-value: 3.95e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  664 KRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLA 743
Cdd:TIGR02168  222 LRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE 301

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  744 HSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEqedavqdgarvrrelershrqLEQLEGKRSVLAKELVEVREAL 823
Cdd:TIGR02168  302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEE---------------------LAELEEKLEELKEELESLEAEL 360

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  824 SRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEeaslqdslsklsalneslaqdkldlnrlVAQLEEEKSAL 903
Cdd:TIGR02168  361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE----------------------------IERLEARLERL 412

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  904 QGRQRQAEQEATVAREEQERLEELRLEQEVArqGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLaqeaawRELEAER 983
Cdd:TIGR02168  413 EDRRERLQQEIEELLKKLEEAELKELQAELE--ELEEELEELQEELERLEEALEELREELEEAEQAL------DAAEREL 484

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  984 AQLQSQLqreqeELLARLEAEKEELSEEIAALQQERdEGLLLAESEKQQALSLKESEKTALSEKLMGTRHSLATISLEME 1063
Cdd:TIGR02168  485 AQLQARL-----DSLERLQENLEGFSEGVKALLKNQ-SGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAA 558

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1064 RQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQEVRRLqeqARDLGKQRDSCLREAEELRTQLRLLEDARDGL 1143
Cdd:TIGR02168  559 KKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV---AKDLVKFDPKLRKALSYLLGGVLVVDDLDNAL 635

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1144 RRELLEAQRKLRESQEGREVQRQeaGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEA 1223
Cdd:TIGR02168  636 ELAKKLRPGYRIVTLDGDLVRPG--GVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE 713

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1224 RTAVGKEAGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRLGRELAELQGRLALGERAEKESRRETLGLRQRLLK 1303
Cdd:TIGR02168  714 LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1304 GEASLEVMRQELQVAQRKLQEQEGEFRTRERRLLGSLEEARGTEKQQLDHA---RGLELKLEAARAEAAELGLRLSAAEG 1380
Cdd:TIGR02168  794 LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEeqiEELSEDIESLAAEIEELEELIEELES 873

                          730       740       750
                   ....*....|....*....|....*....|.
gi 1370455403 1381 RAQGLEAELARVEVQRRAAEAQLGGLRSALR 1411
Cdd:TIGR02168  874 ELEALLNERASLEEALALLRSELEELSEELR 904
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 221-1018 5.79e-22

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 103.98  E-value: 5.79e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  221 QQELSRVEDLLAQSRAERD------ELAIKYNAVSERLEQ------ALRLEPGELETQEPRGLVRQSVELRRQLQEEQAS 288
Cdd:TIGR02168  185 RENLDRLEDILNELERQLKslerqaEKAERYKELKAELRElelallVLRLEELREELEELQEELKEAEEELEELTAELQE 264

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  289 YRRKLQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLL---ERSGELEQQRLRDTEHSQDLESALIRLEEE----QQ 361
Cdd:TIGR02168  265 LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQilrERLANLERQLEELEAQLEELESKLDELAEElaelEE 344

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  362 RSASLAQVNAMLREQLDQAGSANQALSEDIRKVTNDWTRCRKELehreAAWRREEESFNAYFSNEHSRLlllwrqvvgfR 441
Cdd:TIGR02168  345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV----AQLELQIASLNNEIERLEARL----------E 410

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  442 RLVSEVKMFTERDLLQLGGELARTSRAVQEAGLGLSTGLRLAESRAEAALEKQALLQAQLEEQLRDKVLREKDLAQQQMQ 521
Cdd:TIGR02168  411 RLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  522 SDLDKaDLSARVTELGLAVKRLEKQNLEKDQVNKDLTEKLEALESLRlqeqAALETEDGEGLQQTLRDLAQAVLSDSESG 601
Cdd:TIGR02168  491 LDSLE-RLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYE----AAIEAALGGRLQAVVVENLNAAKKAIAFL 565

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  602 VQLSgsertadasngslrglSGQRTPSPPRRSSPGRGRSPRRGPSPACSDSSTLALIH-SALHKRQLQVQDMRGRYEASQ 680
Cdd:TIGR02168  566 KQNE----------------LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLvKFDPKLRKALSYLLGGVLVVD 629

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  681 DLLGTLRKQLSDSESERRA-LEEQLQRLR-------DKTDGAMQAHedaQREVQRLRSANELLSREKSNLAHSLQVAQQQ 752
Cdd:TIGR02168  630 DLDNALELAKKLRPGYRIVtLDGDLVRPGgvitggsAKTNSSILER---RREIEELEEKIEELEEKIAELEKALAELRKE 706

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  753 AEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDM 832
Cdd:TIGR02168  707 LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  833 LQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQ 912
Cdd:TIGR02168  787 LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEE 866

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  913 EATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQ-EAAWRELEAERAQLQSQLQ 991
Cdd:TIGR02168  867 LIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQlELRLEGLEVRIDNLQERLS 946

                          810       820
                   ....*....|....*....|....*..
gi 1370455403  992 REQEELLARLEAEKEELSEEIAALQQE 1018
Cdd:TIGR02168  947 EEYSLTLEEAEALENKIEDDEEEARRR 973
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 977-1588 2.08e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 102.32  E-value: 2.08e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  977 RELEAERAQLQSQlqREQEELLARLEAEKEELSEEIAALqqeRDEGLLLAESEKQQALSLKESEKTALSEKLMGTRHSLA 1056
Cdd:COG1196    196 GELERQLEPLERQ--AEKAERYRELKEELKELEAELLLL---KLRELEAELEELEAELEELEAELEELEAELAELEAELE 270

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1057 TISLEMERQKRDAQSRQEQDRSTVNALTSELRDLraqreeaaaahaqevRRLQEQARDLGKQRDSCLREAEELRTQLRLL 1136
Cdd:COG1196    271 ELRLELEELELELEEAQAEEYELLAELARLEQDI---------------ARLEERRRELEERLEELEEELAELEEELEEL 335

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1137 EDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQK 1216
Cdd:COG1196    336 EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER 415

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1217 LALLEEartavgkEAGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRLGRELAELQGRLALGERAEKESRRETLG 1296
Cdd:COG1196    416 LERLEE-------ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1297 LRQRLLKGEASLEVMRQELQVAQRKLQEQEGEFRTRERRLLGSLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRLS 1376
Cdd:COG1196    489 AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA 568

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1377 AAEGRAQGLeaELARVEVQRRAAEAQLGGLRSALRRGLGLGRAPSPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGS 1456
Cdd:COG1196    569 AKAGRATFL--PLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRL 646

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1457 QPPSPGPATSPASPDLDPEAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEA 1536
Cdd:COG1196    647 REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726

                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1370455403 1537 RRSVDGRLSGVQAELALQEESVRRSERERRATLDQVATLERSLQATESELRA 1588
Cdd:COG1196    727 EEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 221-838 5.16e-18

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 91.15  E-value: 5.16e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  221 QQELSRVEDLLAQSRAERDEL------AIKYNAVSERLEQALrlepgeletqeprglVRQSVELRRQLQEEQASYRRKLQ 294
Cdd:COG1196    185 EENLERLEDILGELERQLEPLerqaekAERYRELKEELKELE---------------AELLLLKLRELEAELEELEAELE 249

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  295 AYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLLERSGELEQQRLRDTEHSQDLESALIRLEEEQQRSASLAQVNAMLR 374
Cdd:COG1196    250 ELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE 329

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  375 EQLDQAGSANQALSEDIRKVTNDWTRCRKELEHREAAWRREEESFNAyfsnEHSRLLLLWRQVVGFRRLVSEVKMFTERD 454
Cdd:COG1196    330 EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE----AEEELEELAEELLEALRAAAELAAQLEEL 405

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  455 LLQLGGELARTSRAVQEAGLGLSTGLRLAESRAEAALEKQALLQAQLEEQLRDKVLREKDLAQQQMQSDLDKADLSARVT 534
Cdd:COG1196    406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  535 ELGLAVKRLEKQNLEKD--QVNKDLTEKLEALESLRLQEQAALETEDGEGLQQTLRDLAQAVLSDsesgVQLSGSERTAD 612
Cdd:COG1196    486 LAEAAARLLLLLEAEADyeGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQN----IVVEDDEVAAA 561

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  613 ASNGSLRGLSGQRTPSPPRRSSPGRGRSPRRgpspacsdssTLALIHSALHKRQLQVQDMRGRYEASQDLLGTLRKQLSD 692
Cdd:COG1196    562 AIEYLKAAKAGRATFLPLDKIRARAALAAAL----------ARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  693 SESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRR 772
Cdd:COG1196    632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711

                          570       580       590       600       610       620
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370455403  773 QRDRLEEEQEDavQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKA 838
Cdd:COG1196    712 AEEERLEEELE--EEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
PTZ00121 PTZ00121
MAEBL; Provisional
 694-1251 1.28e-14

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 80.19  E-value: 1.28e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  694 ESERRALEEQLQRLRDKTDGAMQAHEDAQReVQRLRSANELLSREKSNLAH-SLQVAQQQAEELRQErEKLQAAQEELRR 772
Cdd:PTZ00121  1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKK-AEEERNNEEIRKFEEARMAHfARRQAAIKAEEARKA-DELKKAEEKKKA 1292

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  773 QRDRLEEEQE--DAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREAlsrATLQRDMLQAEKAEVAEALTKAEAG 850
Cdd:PTZ00121  1293 DEAKKAEEKKkaDEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA---AEAAKAEAEAAADEAEAAEEKAEAA 1369

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  851 rvELELSMTKLRAEEASLQ-DSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAE----QEATVAREEQERLE 925
Cdd:PTZ00121  1370 --EKKKEEAKKKADAAKKKaEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEkkkaDEAKKKAEEAKKAD 1447

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  926 ELRLEQEVARQGlEGSLRVAEQAQEALEQQLptlRHERSQLQEQLAQEAAWRELEAERAQLQSQLQREQEEllARLEAEK 1005
Cdd:PTZ00121  1448 EAKKKAEEAKKA-EEAKKKAEEAKKADEAKK---KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE--AKKAEEA 1521

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1006 EELSEEIAALQQERDEGLLLAEsEKQQALSLKESEKTALSEklmgtrhslatislemERQKRDAQSRQEQDRSTVNALTS 1085
Cdd:PTZ00121  1522 KKADEAKKAEEAKKADEAKKAE-EKKKADELKKAEELKKAE----------------EKKKAEEAKKAEEDKNMALRKAE 1584

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1086 ELRDLRAQREEAAAAHAQEVRRLQ-EQAR-----------------------DLGKQRDSCLREAEELRTQLRLLEDARD 1141
Cdd:PTZ00121  1585 EAKKAEEARIEEVMKLYEEEKKMKaEEAKkaeeakikaeelkkaeeekkkveQLKKKEAEEKKKAEELKKAEEENKIKAA 1664

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1142 GLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSA--VKKAESER-ISLKLANEDKEQKLA 1218
Cdd:PTZ00121  1665 EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAeeLKKAEEENkIKAEEAKKEAEEDKK 1744

                          570       580       590
                   ....*....|....*....|....*....|...
gi 1370455403 1219 LLEEARTAVGkEAGELRTGLQEVERSRLEARRE 1251
Cdd:PTZ00121  1745 KAEEAKKDEE-EKKKIAHLKKEEEKKAEEIRKE 1776
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1475-1972 1.61e-10

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 66.60  E-value: 1.61e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1475 EAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARrsvdgrlSGVQAELALq 1554
Cdd:PRK02224   233 RETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEER-------DDLLAEAGL- 304

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1555 eesvrrSERERRATLDQVATLERSLQATESELRASQEKIskmkaneTKLEGDKRRLKEVLDASESRTVKLELQRRSLEGE 1634
Cdd:PRK02224   305 ------DDADAEAVEARREELEDRDEELRDRLEECRVAA-------QAHNEEAESLREDADDLEERAEELREEAAELESE 371

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1635 LQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTEALAQSSA---- 1710
Cdd:PRK02224   372 LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAllea 451

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1711 -----------------SLNSTRDKNLHLQKALTACEHDRQVLQERLDAArQALSEARKQSSSLGEQVQTLRGEVADLEL 1773
Cdd:PRK02224   452 gkcpecgqpvegsphveTIEEDRERVEELEAELEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERREDLEELIAERRE 530

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1774 QRVEAEGQLQQLREVLRQRQEGEAAALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEK---------- 1843
Cdd:PRK02224   531 TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAiadaedeier 610

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1844 --DRVALRRTLDKVEREKLRSHEDTVRLSAEKGRLDRtLTGAELELAEAQRQIQQLEAQVVVLEQSHSPAQLEVDAqqqQ 1921
Cdd:PRK02224   611 lrEKREALAELNDERRERLAEKRERKRELEAEFDEAR-IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGA---V 686

                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1370455403 1922 LELQQEVERLRSAQAQTERTLEARERAHRQrvrglEEQVSTLKGQLQQELR 1972
Cdd:PRK02224   687 ENELEELEELRERREALENRVEALEALYDE-----AEELESMYGDLRAELR 732
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 726-1393 1.29e-09

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 63.60  E-value: 1.29e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  726 QRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREklqaAQEELRRQRDRLEEEQEDAVQ------DGARVRRE--LER 797
Cdd:pfam15921   92 RRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERD----AMADIRRRESQSQEDLRNQLQntvhelEAAKCLKEdmLED 167

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  798 SHRQLEQL-------EGKRSVLAKELVEVREALSRATLQRDMLQAEK-AEVAEALTKAEAgrvELELSMTKLRAEEASLQ 869
Cdd:pfam15921  168 SNTQIEQLrkmmlshEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHfRSLGSAISKILR---ELDTEISYLKGRIFPVE 244

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  870 DSLSKLsalnESLAQDKLDLnrlvaQLEEEKSALQgrQRQAEQEATVAREEQERLEELRLEQEVARQgLEGSLRVAEQAQ 949
Cdd:pfam15921  245 DQLEAL----KSESQNKIEL-----LLQQHQDRIE--QLISEHEVEITGLTEKASSARSQANSIQSQ-LEIIQEQARNQN 312

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  950 EALEQQLPTLRHERSQLQEQLAQeaAWRELEAERAQLQSQLQREQEELL-ARLEAEKEELSEEIAALQQERdegLLLAES 1028
Cdd:pfam15921  313 SMYMRQLSDLESTVSQLRSELRE--AKRMYEDKIEELEKQLVLANSELTeARTERDQFSQESGNLDDQLQK---LLADLH 387

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1029 EKQQALSLKESEKTALSEKLMGTRHSLATISLEMERQKRDAQSRQeqdrSTVNALTSELRDLRAQREEAAAAHAQEVRRL 1108
Cdd:pfam15921  388 KREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLE----ALLKAMKSECQGQMERQMAAIQGKNESLEKV 463

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1109 QEQARDLGKQRDSCLREAEELRTQLRLLEDArdglRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRS 1188
Cdd:pfam15921  464 SSLTAQLESTKEMLRKVVEELTAKKMTLESS----ERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE 539

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1189 NEELRSAvkKAESERISLKLANEDK-----EQKLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELR------- 1256
Cdd:pfam15921  540 GDHLRNV--QTECEALKLQMAEKDKvieilRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKilkdkkd 617

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1257 RQMKMLDSENTRLGRELAELQGRLALGERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEQEGEFRTRERRL 1336
Cdd:pfam15921  618 AKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKL 697

                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1370455403 1337 LGSLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRLSAAEGRAQGLEAELARVE 1393
Cdd:pfam15921  698 KMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLE 754
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 1487-1909 1.91e-06

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 53.20  E-value: 1.91e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1487 ELRSAQRERDELRTQTSALNRQLAEMEAE---RDSATSRARQLQKAVAESEEA--------RRSVDGR----------LS 1545
Cdd:pfam15921  357 ELTEARTERDQFSQESGNLDDQLQKLLADlhkREKELSLEKEQNKRLWDRDTGnsitidhlRRELDDRnmevqrlealLK 436

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1546 GVQAELALQEESVRRSERERRATLDQVATLERSLQATESELRASQEKISKMK----ANETKLEGDKRRLKEVLDASESRT 1621
Cdd:pfam15921  437 AMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKmtleSSERTVSDLTASLQEKERAIEATN 516

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1622 VKLELQRRSLEGELQRSRlGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGL 1701
Cdd:pfam15921  517 AEITKLRSRVDLKLQELQ-HLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQL 595

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1702 TEALAQSSASLNS---TRDKNLHLQKALTACEHDRQVLQ--------ERLDAAR-------QALSE---ARKQSSSLGEQ 1760
Cdd:pfam15921  596 EKEINDRRLELQEfkiLKDKKDAKIRELEARVSDLELEKvklvnagsERLRAVKdikqerdQLLNEvktSRNELNSLSED 675

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1761 VQTLRGEVAD-----------LELQRVEAEGQLQQLREVLRQRQEGEAAALNTVQKLQDE---RR----LLQERLGSLQR 1822
Cdd:pfam15921  676 YEVLKRNFRNkseemetttnkLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQitaKRgqidALQSKIQFLEE 755

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1823 ALAQLEAEKR--EVERSALRLEKDRVALRRTLDKVEREKLRSHEDtvRLSAEKGRLDRTLTGAELELAEAQRQIQQLEAQ 1900
Cdd:pfam15921  756 AMTNANKEKHflKEEKNKLSQELSTVATEKNKMAGELEVLRSQER--RLKEKVANMEVALDKASLQFAECQDIIQRQEQE 833


                   ....*....
gi 1370455403 1901 VVVLEQSHS 1909
Cdd:pfam15921  834 SVRLKLQHT 842
PTZ00121 PTZ00121
MAEBL; Provisional
 222-875 1.78e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.06  E-value: 1.78e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  222 QELSRVEDLLAQSRAERDELAIKYNAV-----------SERLEQALRLEPGELETQEPRGL--VRQSVELRRQLQEEQAS 288
Cdd:PTZ00121  1185 EEVRKAEELRKAEDARKAEAARKAEEErkaeearkaedAKKAEAVKKAEEAKKDAEEAKKAeeERNNEEIRKFEEARMAH 1264

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  289 YRRKLQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLLERSGELEQQRLRD-----TEHSQDLESALIRLEEEQQRS 363
Cdd:PTZ00121  1265 FARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADeakkkAEEAKKKADAAKKKAEEAKKA 1344

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  364 ASLAQVnamlreqldQAGSANQALSEDIRKVTNDWTRCRKELEHREAAWRREEEsfnayfsnehsrllllwrqvvgfRRL 443
Cdd:PTZ00121  1345 AEAAKA---------EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE-----------------------KKK 1392

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  444 VSEVKMFTERDLLQlGGELARTSRAVQEAglglstglrlAESRAEAALEKQA-LLQAQLEEQLRDKVLREKDLAQQQMQS 522
Cdd:PTZ00121  1393 ADEAKKKAEEDKKK-ADELKKAAAAKKKA----------DEAKKKAEEKKKAdEAKKKAEEAKKADEAKKKAEEAKKAEE 1461

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  523 DLDKADLSARVTELglavKRLEKQNLEKDQVNKDLTEKLEALESLRLQEQAALETEDGEGLQQTLRDLAQAVLSDSESGV 602
Cdd:PTZ00121  1462 AKKKAEEAKKADEA----KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD 1537

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  603 QLSGSERTADASngSLRGLSGQRTPSPPRRSSPGRGRSPRRgpspacsdsstlaliHSALHKRQLQVQDMRGRYEASQDL 682
Cdd:PTZ00121  1538 EAKKAEEKKKAD--ELKKAEELKKAEEKKKAEEAKKAEEDK---------------NMALRKAEEAKKAEEARIEEVMKL 1600

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  683 LGTLRKQlsDSESERRALEEQL--QRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEr 760
Cdd:PTZ00121  1601 YEEEKKM--KAEEAKKAEEAKIkaEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA- 1677

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  761 EKLQAAQEELRRQRDRLEEEQEDAvQDGARVRRELERSHRQLEQL---EGKRSVLAKELVEVREALSRATLQRDMLQAEK 837
Cdd:PTZ00121  1678 EEAKKAEEDEKKAAEALKKEAEEA-KKAEELKKKEAEEKKKAEELkkaEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756

                          650       660       670
                   ....*....|....*....|....*....|....*...
gi 1370455403  838 AEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKL 875
Cdd:PTZ00121  1757 KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM 1794
PRK11281 PRK11281
mechanosensitive channel MscK;
176-391 6.22e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 44.90  E-value: 6.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  176 AQITSLPALIREIVTR--NLSQPESPVL---LPATEMASLLSLQEE--NQL--LQQELSRVEDLL--AQSRAERDELAIK 244
Cdd:PRK11281    87 QQLAQAPAKLRQAQAEleALKDDNDEETretLSTLSLRQLESRLAQtlDQLqnAQNDLAEYNSQLvsLQTQPERAQAALY 166

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  245 YNavSERLEQALRLEPGELETQEPrglvrQSVELRRQLQEEQA------SYRRKLQA--------YQ-------EGQQRQ 303
Cdd:PRK11281   167 AN--SQRLQQIRNLLKGGKVGGKA-----LRPSQRVLLQAEQAllnaqnDLQRKSLEgntqlqdlLQkqrdyltARIQRL 239

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  304 AQLVQRLQGKILQykKRCSELEQQLLE-RSGELEQQRLRDTEHSQDLESALI---RLEEEQQRSASLAQVNAMLREQLDQ 379
Cdd:PRK11281   240 EHQLQLLQEAINS--KRLTLSEKTVQEaQSQDEAARIQANPLVAQELEINLQlsqRLLKATEKLNTLTQQNLRVKNWLDR 317

                          250
                   ....*....|..
gi 1370455403  380 AGSANQALSEDI 391
Cdd:PRK11281   318 LTQSERNIKEQI 329
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 204-566 2.14e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 43.12  E-value: 2.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  204 ATEMASLLSLQEENQLLQQELSRVEDLLAQSRAERDELAIKYNAVSERLEQAL-RLEPGELETQEPRGLVRQSVElrrQL 282
Cdd:TIGR02168  634 ALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIeELEEKIAELEKALAELRKELE---EL 710

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  283 QEEQASYRRKLQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLLERSGELEQQRLRDTEHSQDLESALIRLEEEQQR 362
Cdd:TIGR02168  711 EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  363 SASLAQVNAMLREQLDQAGSANQALSEDIRKVT-------NDWTRCRKELEHREAAWRREEE---SFNAYFSNEHSRLLL 432
Cdd:TIGR02168  791 IEQLKEELKALREALDELRAELTLLNEEAANLRerlesleRRIAATERRLEDLEEQIEELSEdieSLAAEIEELEELIEE 870

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  433 LWRQVVGF---RRLVSEVKMFTERDLLQLGGELARTSRAVQEAgLGLSTGLRLAESRAEAALEKQALLQAQLEEQLRDKV 509
Cdd:TIGR02168  871 LESELEALlneRASLEEALALLRSELEELSEELRELESKRSEL-RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY 949

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1370455403  510 LREKDLAQQQMQS-DLDKADLSARVTELGLAVKRLEKQNLEKDQVNKDLTEKLEALES 566
Cdd:TIGR02168  950 SLTLEEAEALENKiEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTA 1007
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
 678-917 8.81e-03

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 467957 [Multi-domain]  Cd Length: 1848  Bit Score: 41.36  E-value: 8.81e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  678 ASQDLLGTLRKQLSDSESERRALEEQlqrlrdktdgaMQAHEDAQRevqrlrsanelLSREKSNLAHSLQVAQQQAEELR 757
Cdd:NF012221  1539 ESSQQADAVSKHAKQDDAAQNALADK-----------ERAEADRQR-----------LEQEKQQQLAAISGSQSQLESTD 1596

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  758 QereklQAAQEELRRQRDRLEEEQEDavqdgarVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRdmlqaek 837
Cdd:NF012221  1597 Q-----NALETNGQAQRDAILEESRA-------VTKELTTLAQGLDALDSQATYAGESGDQWRNPFAGGLLDR------- 1657

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  838 aeVAEAL--TKAEAGrVELELSMTKLRAEEASLQDSLSKLSAlneslAQDKLDLNRLVAQLEEEKSALQGRQRQAE---- 911
Cdd:NF012221  1658 --VQEQLddAKKISG-KQLADAKQRHVDNQQKVKDAVAKSEA-----GVAQGEQNQANAEQDIDDAKADAEKRKDDalak 1729


                   ....*..
gi 1370455403  912 -QEATVA 917
Cdd:NF012221  1730 qNEAQQA 1736
 
Name Accession Description Interval E-value
Rootletin pfam15035
Ciliary rootlet component, centrosome cohesion;
290-466 8.31e-57

Ciliary rootlet component, centrosome cohesion;


Pssm-ID: 464459 [Multi-domain]  Cd Length: 190  Bit Score: 195.26  E-value: 8.31e-57
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  290 RRKLQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLLERSGELEQQRL-------------RDTEHSQDLESALIRL 356
Cdd:pfam15035    1 RRKLQAYQEAQQRQAQLVQKLQAKVLQYKKRCSELEQQLLEKTSELEKTELllrkltleprlqrLEREHSADLEEALIRL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  357 EEEQQRSASLAQVNAMLREQLDQAGSANQALSEDIRKVTNDWTRCRKELEHREAAWRREEESFNAYFSNEHSRLLLLWRQ 436
Cdd:pfam15035   81 EEERQRSESLSQVNSLLREQLEQASRANEALREDLQKLTNDWERAREELEQKESEWRKEEEAFNEYLSSEHSRLLSLWRE 160

                          170       180       190
                   ....*....|....*....|....*....|
gi 1370455403  437 VVGFRRLVSEVKMFTERDLLQLGGELARTS 466
Cdd:pfam15035  161 VVAVRRQFTELKTATERDLSELKTEFSRTS 190
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 664-1222 7.92e-26

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 116.57  E-value: 7.92e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  664 KRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLA 743
Cdd:COG1196    222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE 301

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  744 HSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREAL 823
Cdd:COG1196    302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  824 SRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSAL 903
Cdd:COG1196    382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  904 QGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEgslRVAEQAQEALEQQLPTLRHERSQLQEQLAQEAAWRELEAER 983
Cdd:COG1196    462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLL---EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA 538

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  984 AqlqsQLQREQEELLARLEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKTALSEklmgtrhSLATISLEME 1063
Cdd:COG1196    539 A----LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAI-------GAAVDLVASD 607

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1064 RQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQEVRRLQEQARDLG-KQRDSCLREAEELRTQLRLLEDARDG 1142
Cdd:COG1196    608 LREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGsLTGGSRRELLAALLEAEAELEELAER 687

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1143 LRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEE 1222
Cdd:COG1196    688 LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER 767
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 700-1296 3.86e-25

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 114.26  E-value: 3.86e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  700 LEEQLQRLRDKTDGAMQAHEDAQREVQRLRsanELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEE 779
Cdd:COG1196    198 LERQLEPLERQAEKAERYRELKEELKELEA---ELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRL 274

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  780 EQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMT 859
Cdd:COG1196    275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  860 KLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQEAtvareeqerleelrleqevarQGLE 939
Cdd:COG1196    355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE---------------------EALL 413

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  940 GSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQEAAWRELEAERAQLQSQLQREQEELLARLEAEKEELSEEIAALQQER 1019
Cdd:COG1196    414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1020 DEGLLLAESEKQQALSLKESEKTALSEKLMGTRHSLATISLEMERQKRDA-----QSRQEQDRSTVNALTSELRDLRAQR 1094
Cdd:COG1196    494 LLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAlaaalQNIVVEDDEVAAAAIEYLKAAKAGR 573

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1095 EEAAAAHAQEVRRLQEQARDLGKQRD-----SCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAG 1169
Cdd:COG1196    574 ATFLPLDKIRARAALAAALARGAIGAavdlvASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEG 653

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1170 ELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEARTAVGKEAGELRTGLQEVERSRLEAR 1249
Cdd:COG1196    654 EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*..
gi 1370455403 1250 RELQELRRQMKMLDSENTRLGRELAELQGRLALGERAEKESRRETLG 1296
Cdd:COG1196    734 REELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1105-1901 1.96e-23

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 108.99  E-value: 1.96e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1105 VRRLQEQARDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREA 1184
Cdd:TIGR02168  234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1185 LRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEARTAV-------GKEAGELRTGLQEVERSRLEARRELQELRR 1257
Cdd:TIGR02168  314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLeaeleelEAELEELESRLEELEEQLETLRSKVAQLEL 393

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1258 QMKMLDSENTRLGRELAELQGRLA-LGERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEQEGEFRTRERRL 1336
Cdd:TIGR02168  394 QIASLNNEIERLEARLERLEDRRErLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1337 LGSLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRLSAAEGRAQGLEAELARVEVQ---RRAAEAQLGGLRSALrrg 1413
Cdd:TIGR02168  474 EQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDegyEAAIEAALGGRLQAV--- 550

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1414 lglgrapspaprpvpgspardapaegsgEGLNSPSTLECSPGSQPPSPGPATSPASPDLDPEAVRGALREFLQELRSAQR 1493
Cdd:TIGR02168  551 ----------------------------VVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLG 602

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1494 ERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARR-SVDGRLSGVQAELALQEESVRRsererratldqv 1572
Cdd:TIGR02168  603 VAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIvTLDGDLVRPGGVITGGSAKTNS------------ 670

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1573 atlerSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLGLSDREAQAQAL 1652
Cdd:TIGR02168  671 -----SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1653 QDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTEALAQSSASLNSTRDKNLHLQKALTACEHD 1732
Cdd:TIGR02168  746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1733 RQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQEGEAAALNTVQKLQDERRL 1812
Cdd:TIGR02168  826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1813 LQERLGSLQRALAQLEAekrEVERSALRLEKDRVALRRTLDKVEREKLRSHEDTVRLSAEKgrldrtltgaELELAEAQR 1892
Cdd:TIGR02168  906 LESKRSELRRELEELRE---KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKI----------EDDEEEARR 972


                   ....*....
gi 1370455403 1893 QIQQLEAQV 1901
Cdd:TIGR02168  973 RLKRLENKI 981
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 762-1344 2.06e-23

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 108.87  E-value: 2.06e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  762 KLQAAQEELRRQRDRLEEeqedavqdgarVRRELERSHRQLEQLEgKRSVLAKELvEVREALSRAtLQRDMLQAEKAEVA 841
Cdd:COG1196    180 KLEATEENLERLEDILGE-----------LERQLEPLERQAEKAE-RYRELKEEL-KELEAELLL-LKLRELEAELEELE 245

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  842 EALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQ 921
Cdd:COG1196    246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL 325

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  922 ERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLptlRHERSQLQEQLAQEAAWRELEAERAQLQSQLQREQEELLARL 1001
Cdd:COG1196    326 AELEEELEELEEELEELEEELEEAEEELEEAEAEL---AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL 402

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1002 EAEKEELSEEI------------AALQQERDEGLLLAESEKQQALSLKESEKTALSEKLMGTRHSLATISLEMERQKRDA 1069
Cdd:COG1196    403 EELEEAEEALLerlerleeeleeLEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1070 QSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQEVRRLQEQA----RDLGKQRDSCLREAEELRTQLRLLEDARDGLRR 1145
Cdd:COG1196    483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAvavlIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA 562

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1146 ELLEAQRKL-----RESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALL 1220
Cdd:COG1196    563 IEYLKAAKAgratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTL 642

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1221 EEARTAVGKEAGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRLGRELAELQGRLALGERAEKESRRETLGLRQR 1300
Cdd:COG1196    643 AGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....
gi 1370455403 1301 LLKGEASLEVMRQELQVAQRKLQEQEGEFRTRERRLLGSLEEAR 1344
Cdd:COG1196    723 EEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELE 766
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 664-1411 3.95e-23

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 107.83  E-value: 3.95e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  664 KRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLA 743
Cdd:TIGR02168  222 LRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE 301

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  744 HSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEqedavqdgarvrrelershrqLEQLEGKRSVLAKELVEVREAL 823
Cdd:TIGR02168  302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEE---------------------LAELEEKLEELKEELESLEAEL 360

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  824 SRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEeaslqdslsklsalneslaqdkldlnrlVAQLEEEKSAL 903
Cdd:TIGR02168  361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE----------------------------IERLEARLERL 412

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  904 QGRQRQAEQEATVAREEQERLEELRLEQEVArqGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLaqeaawRELEAER 983
Cdd:TIGR02168  413 EDRRERLQQEIEELLKKLEEAELKELQAELE--ELEEELEELQEELERLEEALEELREELEEAEQAL------DAAEREL 484

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  984 AQLQSQLqreqeELLARLEAEKEELSEEIAALQQERdEGLLLAESEKQQALSLKESEKTALSEKLMGTRHSLATISLEME 1063
Cdd:TIGR02168  485 AQLQARL-----DSLERLQENLEGFSEGVKALLKNQ-SGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAA 558

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1064 RQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQEVRRLqeqARDLGKQRDSCLREAEELRTQLRLLEDARDGL 1143
Cdd:TIGR02168  559 KKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV---AKDLVKFDPKLRKALSYLLGGVLVVDDLDNAL 635

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1144 RRELLEAQRKLRESQEGREVQRQeaGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEA 1223
Cdd:TIGR02168  636 ELAKKLRPGYRIVTLDGDLVRPG--GVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE 713

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1224 RTAVGKEAGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRLGRELAELQGRLALGERAEKESRRETLGLRQRLLK 1303
Cdd:TIGR02168  714 LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1304 GEASLEVMRQELQVAQRKLQEQEGEFRTRERRLLGSLEEARGTEKQQLDHA---RGLELKLEAARAEAAELGLRLSAAEG 1380
Cdd:TIGR02168  794 LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEeqiEELSEDIESLAAEIEELEELIEELES 873

                          730       740       750
                   ....*....|....*....|....*....|.
gi 1370455403 1381 RAQGLEAELARVEVQRRAAEAQLGGLRSALR 1411
Cdd:TIGR02168  874 ELEALLNERASLEEALALLRSELEELSEELR 904
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1106-1827 2.11e-22

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 105.52  E-value: 2.11e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1106 RRLQEQARDLgkQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKE---- 1181
Cdd:TIGR02168  216 KELKAELREL--ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyal 293

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1182 REALRRSNEELRSAVKKAESERISLKLAN---EDKEQKLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELRRQ 1258
Cdd:TIGR02168  294 ANEISRLEQQKQILRERLANLERQLEELEaqlEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR 373

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1259 MKMLDSENTRLGRELAELQGRLAL--GERAEKESRRETLGLRQRLLKGEAS------LEVMRQELQVAQRKLQEQEGEFR 1330
Cdd:TIGR02168  374 LEELEEQLETLRSKVAQLELQIASlnNEIERLEARLERLEDRRERLQQEIEellkklEEAELKELQAELEELEEELEELQ 453

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1331 TRERRLLGSLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRLSAAEGRAQGLEAELA--------------RVEVQ- 1395
Cdd:TIGR02168  454 EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKnqsglsgilgvlseLISVDe 533

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1396 --RRAAEAQLGG-LRSALRRGLGLGRAPSPAPRPVPGSPARDAPAEGSGEGLNSPSTLEcspgSQPPSPGPATSPASPDL 1472
Cdd:TIGR02168  534 gyEAAIEAALGGrLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDRE----ILKNIEGFLGVAKDLVK 609

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1473 DPEAVRGALREFL------QELRSAQRERDELR-------------------------TQTSALNRQ--LAEMEAERDSA 1519
Cdd:TIGR02168  610 FDPKLRKALSYLLggvlvvDDLDNALELAKKLRpgyrivtldgdlvrpggvitggsakTNSSILERRreIEELEEKIEEL 689

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1520 TSRARQLQKAVAESEEARRSVDGRLSGVQAELalqeesvRRSERERRATLDQVATLERSLQATESELRASQEKISKMKAN 1599
Cdd:TIGR02168  690 EEKIAELEKALAELRKELEELEEELEQLRKEL-------EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1600 ETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVER 1679
Cdd:TIGR02168  763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED 842

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1680 LNGALAKVEESEGALRDKVRGLTEALAQSSASLNstrdknlHLQKALTACEHDRQVLQERLDAARQALSEARKQSSSLGE 1759
Cdd:TIGR02168  843 LEEQIEELSEDIESLAAEIEELEELIEELESELE-------ALLNERASLEEALALLRSELEELSEELRELESKRSELRR 915

                          730       740       750       760       770       780
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1370455403 1760 QVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQEGEA-AALNTVQKLQDERRLLQERLGSLQRALAQL 1827
Cdd:TIGR02168  916 ELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLeEAEALENKIEDDEEEARRRLKRLENKIKEL 984
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 659-1396 4.19e-22

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 104.75  E-value: 4.19e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  659 HSALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSRE 738
Cdd:TIGR02168  238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ 317

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  739 KSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGAR-------VRRELERSHRQLEQLEGKRSV 811
Cdd:TIGR02168  318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEElesrleeLEEQLETLRSKVAQLELQIAS 397

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  812 LAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELS-----MTKLRAEEASLQDSLSKLSALNESLAQDK 886
Cdd:TIGR02168  398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEeleeeLEELQEELERLEEALEELREELEEAEQAL 477

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  887 LDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEgslrVAEQAQEALEQQLPtlrhERSQL 966
Cdd:TIGR02168  478 DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELIS----VDEGYEAAIEAALG----GRLQA 549

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  967 QEQLAQEAAWRELEaerAQLQSQLQREQEELLARLEAEKEELSEEIAALQQERDEGLLL----AESEKQQALS------- 1035
Cdd:TIGR02168  550 VVVENLNAAKKAIA---FLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKdlvkFDPKLRKALSyllggvl 626

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1036 LKESEKTALsEKLMGTRHSLATISLEMERQKRDAQSRQEQDRSTVNAL--TSELRDLraqreeaaaahAQEVRRLQEQAR 1113
Cdd:TIGR02168  627 VVDDLDNAL-ELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILerRREIEEL-----------EEKIEELEEKIA 694

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1114 DLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELR 1193
Cdd:TIGR02168  695 ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1194 SAVKKAESERISLKLANEDKEQKLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRLGREL 1273
Cdd:TIGR02168  775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1274 AELQGRLALGERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEQEGEfRTRERRLLGSLEEARGTEKQQLDH 1353
Cdd:TIGR02168  855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESK-RSELRRELEELREKLAQLELRLEG 933

                          730       740       750       760
                   ....*....|....*....|....*....|....*....|...
gi 1370455403 1354 ARGLELKLEAARAEAAELGLRLSAAEGRAQGLEAELARVEVQR 1396
Cdd:TIGR02168  934 LEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKR 976
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1149-1967 4.97e-22

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 104.37  E-value: 4.97e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1149 EAQRKLRESQEGREVQRQEAGELRR---SLGEGAKEREALRRSNEELRSAvkkaesERISLKLANEDKEQKLALLEEART 1225
Cdd:TIGR02168  176 ETERKLERTRENLDRLEDILNELERqlkSLERQAEKAERYKELKAELREL------ELALLVLRLEELREELEELQEELK 249

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1226 AVGKEAGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRLGRELAELQGRLALGERAEKESRRETLGLRQRLLKGE 1305
Cdd:TIGR02168  250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE 329

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1306 ASLEVMRQELQVAQRKLQEQEGEFRtrerRLLGSLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRLSAAEGRAQGL 1385
Cdd:TIGR02168  330 SKLDELAEELAELEEKLEELKEELE----SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL 405

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1386 EAELARVEVQRRAAEAQLGGLRSALRRglglgrapspaprpvpgsPARDAPAEGSGEGLNSPSTLECSPGSQPPSPgpat 1465
Cdd:TIGR02168  406 EARLERLEDRRERLQQEIEELLKKLEE------------------AELKELQAELEELEEELEELQEELERLEEAL---- 463

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1466 spaspdldpEAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSAtsrarqlqKAVAESEEARRSVDGRLS 1545
Cdd:TIGR02168  464 ---------EELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV--------KALLKNQSGLSGILGVLS 526

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1546 ---------GVQAELALQEESVRRSERERRATLDQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDA 1616
Cdd:TIGR02168  527 elisvdegyEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKD 606

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1617 SESRTVKLelqRRSLEGELQRSRLglSDREAQAQALQDRVDSLQRQVadseVKAGTLQLTVERLNGALAKVEESEGALRD 1696
Cdd:TIGR02168  607 LVKFDPKL---RKALSYLLGGVLV--VDDLDNALELAKKLRPGYRIV----TLDGDLVRPGGVITGGSAKTNSSILERRR 677

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1697 KVRGLTEALAQSSASLNSTRDKNLHLQKALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRV 1776
Cdd:TIGR02168  678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1777 EAEGQLQQLREVLRQRQEGEAAALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVE 1856
Cdd:TIGR02168  758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1857 REKLRSHEDTVRLSAEKGRLDRTLTGAELELAEAQRQIQQLEAQVVVLEQSHSPAQLEVDAQQQQLELQQevERLRSAQA 1936
Cdd:TIGR02168  838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE--SKRSELRR 915

                          810       820       830
                   ....*....|....*....|....*....|.
gi 1370455403 1937 QTERtLEARERAHRQRVRGLEEQVSTLKGQL 1967
Cdd:TIGR02168  916 ELEE-LREKLAQLELRLEGLEVRIDNLQERL 945
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 221-1018 5.79e-22

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 103.98  E-value: 5.79e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  221 QQELSRVEDLLAQSRAERD------ELAIKYNAVSERLEQ------ALRLEPGELETQEPRGLVRQSVELRRQLQEEQAS 288
Cdd:TIGR02168  185 RENLDRLEDILNELERQLKslerqaEKAERYKELKAELRElelallVLRLEELREELEELQEELKEAEEELEELTAELQE 264

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  289 YRRKLQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLL---ERSGELEQQRLRDTEHSQDLESALIRLEEE----QQ 361
Cdd:TIGR02168  265 LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQilrERLANLERQLEELEAQLEELESKLDELAEElaelEE 344

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  362 RSASLAQVNAMLREQLDQAGSANQALSEDIRKVTNDWTRCRKELehreAAWRREEESFNAYFSNEHSRLlllwrqvvgfR 441
Cdd:TIGR02168  345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV----AQLELQIASLNNEIERLEARL----------E 410

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  442 RLVSEVKMFTERDLLQLGGELARTSRAVQEAGLGLSTGLRLAESRAEAALEKQALLQAQLEEQLRDKVLREKDLAQQQMQ 521
Cdd:TIGR02168  411 RLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  522 SDLDKaDLSARVTELGLAVKRLEKQNLEKDQVNKDLTEKLEALESLRlqeqAALETEDGEGLQQTLRDLAQAVLSDSESG 601
Cdd:TIGR02168  491 LDSLE-RLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYE----AAIEAALGGRLQAVVVENLNAAKKAIAFL 565

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  602 VQLSgsertadasngslrglSGQRTPSPPRRSSPGRGRSPRRGPSPACSDSSTLALIH-SALHKRQLQVQDMRGRYEASQ 680
Cdd:TIGR02168  566 KQNE----------------LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLvKFDPKLRKALSYLLGGVLVVD 629

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  681 DLLGTLRKQLSDSESERRA-LEEQLQRLR-------DKTDGAMQAHedaQREVQRLRSANELLSREKSNLAHSLQVAQQQ 752
Cdd:TIGR02168  630 DLDNALELAKKLRPGYRIVtLDGDLVRPGgvitggsAKTNSSILER---RREIEELEEKIEELEEKIAELEKALAELRKE 706

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  753 AEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDM 832
Cdd:TIGR02168  707 LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  833 LQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQ 912
Cdd:TIGR02168  787 LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEE 866

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  913 EATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQ-EAAWRELEAERAQLQSQLQ 991
Cdd:TIGR02168  867 LIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQlELRLEGLEVRIDNLQERLS 946

                          810       820
                   ....*....|....*....|....*..
gi 1370455403  992 REQEELLARLEAEKEELSEEIAALQQE 1018
Cdd:TIGR02168  947 EEYSLTLEEAEALENKIEDDEEEARRR 973
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 977-1588 2.08e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 102.32  E-value: 2.08e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  977 RELEAERAQLQSQlqREQEELLARLEAEKEELSEEIAALqqeRDEGLLLAESEKQQALSLKESEKTALSEKLMGTRHSLA 1056
Cdd:COG1196    196 GELERQLEPLERQ--AEKAERYRELKEELKELEAELLLL---KLRELEAELEELEAELEELEAELEELEAELAELEAELE 270

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1057 TISLEMERQKRDAQSRQEQDRSTVNALTSELRDLraqreeaaaahaqevRRLQEQARDLGKQRDSCLREAEELRTQLRLL 1136
Cdd:COG1196    271 ELRLELEELELELEEAQAEEYELLAELARLEQDI---------------ARLEERRRELEERLEELEEELAELEEELEEL 335

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1137 EDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQK 1216
Cdd:COG1196    336 EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER 415

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1217 LALLEEartavgkEAGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRLGRELAELQGRLALGERAEKESRRETLG 1296
Cdd:COG1196    416 LERLEE-------ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1297 LRQRLLKGEASLEVMRQELQVAQRKLQEQEGEFRTRERRLLGSLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRLS 1376
Cdd:COG1196    489 AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA 568

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1377 AAEGRAQGLeaELARVEVQRRAAEAQLGGLRSALRRGLGLGRAPSPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGS 1456
Cdd:COG1196    569 AKAGRATFL--PLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRL 646

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1457 QPPSPGPATSPASPDLDPEAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEA 1536
Cdd:COG1196    647 REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726

                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1370455403 1537 RRSVDGRLSGVQAELALQEESVRRSERERRATLDQVATLERSLQATESELRA 1588
Cdd:COG1196    727 EEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 653-1175 8.09e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 100.40  E-value: 8.09e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  653 STLALIHSALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSAN 732
Cdd:COG1196    267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL 346

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  733 ELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVL 812
Cdd:COG1196    347 EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL 426

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  813 AKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQdkldLNRL 892
Cdd:COG1196    427 EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE----AEAD 502

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  893 VAQLEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQ 972
Cdd:COG1196    503 YEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKI 582

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  973 EAAwrelEAERAQLQSQLQREQEELLARLEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKTALSEKLMGTR 1052
Cdd:COG1196    583 RAR----AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA 658

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1053 HSLATISLEMERQKRDAQSRQEQDRstvnaLTSELRDLRAQREEAAAAHAQEVRRLQEQARDLGKQRDSCLREAEELRTQ 1132
Cdd:COG1196    659 GGSLTGGSRRELLAALLEAEAELEE-----LAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|...
gi 1370455403 1133 LRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSL 1175
Cdd:COG1196    734 REELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1106-1664 9.35e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 100.01  E-value: 9.35e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1106 RRLQEQARDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSL-------GEG 1178
Cdd:COG1196    235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIarleerrREL 314

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1179 AKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELRRQ 1258
Cdd:COG1196    315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1259 MKMLDSENTRLGRELAELQGRLalgERAEKEsrretlglRQRLLKGEASLEVMRQELQVAQRKLQEQEGEFRTRERRLLG 1338
Cdd:COG1196    395 AAELAAQLEELEEAEEALLERL---ERLEEE--------LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1339 SLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRLSAAEGRAQGleaelarveVQRRAAEAQLGGLRSALRRGLGLGR 1418
Cdd:COG1196    464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG---------VKAALLLAGLRGLAGAVAVLIGVEA 534

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1419 APSPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPDLDPEAVRGALREFLQELRSAQRERDEL 1498
Cdd:COG1196    535 AYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR 614

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1499 RTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQEESVRRSERERRATLDQVATLERS 1578
Cdd:COG1196    615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1579 LQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQrrsLEGELQRSRLGLSDREAQAQALQDRVDS 1658
Cdd:COG1196    695 LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE---EEELLEEEALEELPEPPDLEELERELER 771


                   ....*.
gi 1370455403 1659 LQRQVA 1664
Cdd:COG1196    772 LEREIE 777
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 661-1324 2.89e-20

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 98.59  E-value: 2.89e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  661 ALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSanellsrEKS 740
Cdd:TIGR02168  338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA-------RLE 410

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  741 NLAHSLQVAQQQAEELRQEREKLQAaqEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVR 820
Cdd:TIGR02168  411 RLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  821 EALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEaslQDSLSKLSALNESLAQ----DKLDLNRLVAQL 896
Cdd:TIGR02168  489 ARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDE---GYEAAIEAALGGRLQAvvveNLNAAKKAIAFL 565

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  897 EEEKS--------------ALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHE 962
Cdd:TIGR02168  566 KQNELgrvtflpldsikgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGY 645

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  963 RSQLQEQLAQEAAWRELEAERAQLQSQLQREQEelLARLEAEKEELSEEIAALQQERDEglllaeseKQQALSLKESEkt 1042
Cdd:TIGR02168  646 RIVTLDGDLVRPGGVITGGSAKTNSSILERRRE--IEELEEKIEELEEKIAELEKALAE--------LRKELEELEEE-- 713

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1043 alseklmgtRHSLATISLEMERQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQEVRRLQEqardLGKQRDSC 1122
Cdd:TIGR02168  714 ---------LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE----AEEELAEA 780

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1123 LREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESE 1202
Cdd:TIGR02168  781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE 860

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1203 RISLKLANEDKEQKLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRLGRELAELQGRLA- 1281
Cdd:TIGR02168  861 IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDn 940

                          650       660       670       680
                   ....*....|....*....|....*....|....*....|...
gi 1370455403 1282 LGERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQE 1324
Cdd:TIGR02168  941 LQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 652-1281 3.04e-20

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 98.59  E-value: 3.04e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  652 SSTLALIHSALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSA 731
Cdd:TIGR02168  259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  732 NELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSV 811
Cdd:TIGR02168  339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER 418

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  812 LAKE-------------------LVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSL 872
Cdd:TIGR02168  419 LQQEieellkkleeaelkelqaeLEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  873 SKLSALNESLAQDKLDLNRL-------------------------------------------VAQLEEEKS-------- 901
Cdd:TIGR02168  499 ENLEGFSEGVKALLKNQSGLsgilgvlselisvdegyeaaieaalggrlqavvvenlnaakkaIAFLKQNELgrvtflpl 578

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  902 ------ALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQEAA 975
Cdd:TIGR02168  579 dsikgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPG 658

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  976 WRELEAERAQLQSQLQREQEelLARLEAEKEELSEEIAALQQERDEgLLLAESEKQQALSLKESEKTALSEKLMGTRHSL 1055
Cdd:TIGR02168  659 GVITGGSAKTNSSILERRRE--IEELEEKIEELEEKIAELEKALAE-LRKELEELEEELEQLRKELEELSRQISALRKDL 735

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1056 ATISLEmERQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQEVRRLQEQARDLGKQRDSCLREAEELRTQLRL 1135
Cdd:TIGR02168  736 ARLEAE-VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL 814

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1136 LEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERislklanedkeq 1215
Cdd:TIGR02168  815 LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNER------------ 882

                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370455403 1216 klALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRLGRELAELQGRLA 1281
Cdd:TIGR02168  883 --ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 747-1593 3.36e-20

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 98.21  E-value: 3.36e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  747 QVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQdgarvRRELersHRQLEQLEgkRSVLAKELVEVREALSRA 826
Cdd:TIGR02168  175 KETERKLERTRENLDRLEDILNELERQLKSLERQAEKAER-----YKEL---KAELRELE--LALLVLRLEELREELEEL 244

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  827 TLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGR 906
Cdd:TIGR02168  245 QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQ 324

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  907 QRQAEQEATVAREEQERLEELRLEQEVARQGLEGSL-------RVAEQAQEALEQQLPTLRHERSQLQEQLAQEAAWRE- 978
Cdd:TIGR02168  325 LEELESKLDELAEELAELEEKLEELKEELESLEAELeeleaelEELESRLEELEEQLETLRSKVAQLELQIASLNNEIEr 404

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  979 LEAERAQLQSQLQREQEELLARLEAEKEELSEEIAALQQERDEGLLLAESE---KQQALSLKESEKTALSEKLMGTRHSL 1055
Cdd:TIGR02168  405 LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEElerLEEALEELREELEEAEQALDAAEREL 484

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1056 ATISLEMERQKRDaQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQEVRRLQEQARDLGKQRDS-CLREAEELRTQLR 1134
Cdd:TIGR02168  485 AQLQARLDSLERL-QENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAvVVENLNAAKKAIA 563

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1135 LLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKE 1214
Cdd:TIGR02168  564 FLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRP 643

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1215 QKLALLEEARTAVGKeaGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRLGRELAELQGRLALGERAEKESRRET 1294
Cdd:TIGR02168  644 GYRIVTLDGDLVRPG--GVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL 721

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1295 LGLRQRLLKGEASLEVMRQELQVAQRKLQEQEGE---FRTRERRLLGSLEEARGTEKQQLDHARGLELKLEAARAEAAEL 1371
Cdd:TIGR02168  722 EELSRQISALRKDLARLEAEVEQLEERIAQLSKElteLEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1372 GLRLSAAEGRAQGLEAELARVEVQRRAAEAQLGGLRSALRRglglgrapspaprpvpgspardapaegsgeglnspsTLE 1451
Cdd:TIGR02168  802 REALDELRAELTLLNEEAANLRERLESLERRIAATERRLED------------------------------------LEE 845

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1452 CSPGSQPPSPGPATSPASPDLDPEAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVA 1531
Cdd:TIGR02168  846 QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA 925

                          810       820       830       840       850       860
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1370455403 1532 ESEEARRSVDGRLSGVQAELAlqeesvrrseRERRATLDQVATLERSLQATESELRASQEKI 1593
Cdd:TIGR02168  926 QLELRLEGLEVRIDNLQERLS----------EEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1487-1976 1.58e-19

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 96.16  E-value: 1.58e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1487 ELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQEESVRRSERERR 1566
Cdd:COG1196    226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1567 ATLDQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLGLSDRE 1646
Cdd:COG1196    306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1647 AQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTEALAQSSASLNSTRDKNLHLQKAL 1726
Cdd:COG1196    386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1727 TACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVAD-LELQRVEAEGQLQQLREVLRQRQEGEAAALNTVqk 1805
Cdd:COG1196    466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA-- 543

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1806 lqDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKvEREKLRSHEDTVRLSAEKGRLDRTLTGAEL 1885
Cdd:COG1196    544 --LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAA-ALARGAIGAAVDLVASDLREADARYYVLGD 620

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1886 ELAEAQRQIQQLEAQVVVLEQSHSPAQLEVDAQQQQLELQQEVERLRSAQAQTERTLEARERAHRQRVRGLEEQVSTLKG 1965
Cdd:COG1196    621 TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700

                          490
                   ....*....|.
gi 1370455403 1966 QLQQELRRSSA 1976
Cdd:COG1196    701 AEEEEERELAE 711
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1624-1980 1.06e-18

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 93.46  E-value: 1.06e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1624 LELQRRSLEGELQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTE 1703
Cdd:COG1196    216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1704 ALAQSSASLNSTRDKNLHLQKALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQ 1783
Cdd:COG1196    296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1784 QLREVLRQRQEGEAAALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRSH 1863
Cdd:COG1196    376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1864 EDTVRLSAEKGRLDRTLTGAELELAEAQRQIQQLEAQVVVLEQSHSPAQ------LEVDAQQQQLELQQEVERLRSAQAQ 1937
Cdd:COG1196    456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgflegvKAALLLAGLRGLAGAVAVLIGVEAA 535

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|...
gi 1370455403 1938 TERTLEARERAHRQRVRGLEEQVSTLKGQLQQELRRSSAPFSP 1980
Cdd:COG1196    536 YEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLP 578
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 928-1728 1.63e-18

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 92.81  E-value: 1.63e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  928 RLEQEVARQGLEgslRVAEQAQEALEqqlptLRHERSQLQEQLAQeAAWRELEAERAQLQSQLQREQEELlarleaekee 1007
Cdd:TIGR02168  195 LNELERQLKSLE---RQAEKAERYKE-----LKAELRELELALLV-LRLEELREELEELQEELKEAEEEL---------- 255

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1008 lsEEIAALQQERDEGLLLAESEKQQAlslkESEKTALSEKLmgtrHSLATISLEMERQKRDAQSRQEQDRSTVNALTSEL 1087
Cdd:TIGR02168  256 --EELTAELQELEEKLEELRLEVSEL----EEEIEELQKEL----YALANEISRLEQQKQILRERLANLERQLEELEAQL 325

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1088 RDLRAQREEAAAAHAqevrRLQEQARDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQE 1167
Cdd:TIGR02168  326 EELESKLDELAEELA----ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1168 AGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEARtavgkeageLRTGLQEVERSRLE 1247
Cdd:TIGR02168  402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELER---------LEEALEELREELEE 472

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1248 ARRELQELRRQMKMLDSENTRLGRELAELQGrLALGERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRK-LQEQE 1326
Cdd:TIGR02168  473 AEQALDAAERELAQLQARLDSLERLQENLEG-FSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGrLQAVV 551

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1327 GEFRTRERRLLGSLEEARgtekqqLDHARGLELKLEAARAEAAELGLRLSAAEGrAQGLEAELARVEVQ-RRAAEAQLGG 1405
Cdd:TIGR02168  552 VENLNAAKKAIAFLKQNE------LGRVTFLPLDSIKGTEIQGNDREILKNIEG-FLGVAKDLVKFDPKlRKALSYLLGG 624

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1406 LRSA--LRRGLGLGRAPSPAPRPV--------PGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSpASPDLdpE 1475
Cdd:TIGR02168  625 VLVVddLDNALELAKKLRPGYRIVtldgdlvrPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAE-LEKAL--A 701

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1476 AVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQE 1555
Cdd:TIGR02168  702 ELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1556 ESVRRSERERRATLDQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGEL 1635
Cdd:TIGR02168  782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1636 QRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALakveeseGALRDKVRGLTEALAQSSASLNST 1715
Cdd:TIGR02168  862 EELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR-------SELRRELEELREKLAQLELRLEGL 934

                          810
                   ....*....|...
gi 1370455403 1716 RDKNLHLQKALTA 1728
Cdd:TIGR02168  935 EVRIDNLQERLSE 947
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 221-838 5.16e-18

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 91.15  E-value: 5.16e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  221 QQELSRVEDLLAQSRAERDEL------AIKYNAVSERLEQALrlepgeletqeprglVRQSVELRRQLQEEQASYRRKLQ 294
Cdd:COG1196    185 EENLERLEDILGELERQLEPLerqaekAERYRELKEELKELE---------------AELLLLKLRELEAELEELEAELE 249

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  295 AYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLLERSGELEQQRLRDTEHSQDLESALIRLEEEQQRSASLAQVNAMLR 374
Cdd:COG1196    250 ELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE 329

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  375 EQLDQAGSANQALSEDIRKVTNDWTRCRKELEHREAAWRREEESFNAyfsnEHSRLLLLWRQVVGFRRLVSEVKMFTERD 454
Cdd:COG1196    330 EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE----AEEELEELAEELLEALRAAAELAAQLEEL 405

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  455 LLQLGGELARTSRAVQEAGLGLSTGLRLAESRAEAALEKQALLQAQLEEQLRDKVLREKDLAQQQMQSDLDKADLSARVT 534
Cdd:COG1196    406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  535 ELGLAVKRLEKQNLEKD--QVNKDLTEKLEALESLRLQEQAALETEDGEGLQQTLRDLAQAVLSDsesgVQLSGSERTAD 612
Cdd:COG1196    486 LAEAAARLLLLLEAEADyeGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQN----IVVEDDEVAAA 561

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  613 ASNGSLRGLSGQRTPSPPRRSSPGRGRSPRRgpspacsdssTLALIHSALHKRQLQVQDMRGRYEASQDLLGTLRKQLSD 692
Cdd:COG1196    562 AIEYLKAAKAGRATFLPLDKIRARAALAAAL----------ARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  693 SESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRR 772
Cdd:COG1196    632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711

                          570       580       590       600       610       620
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370455403  773 QRDRLEEEQEDavQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKA 838
Cdd:COG1196    712 AEEERLEEELE--EEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 655-1353 2.78e-17

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 88.97  E-value: 2.78e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  655 LALIHSALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESER--------RALEEQLQRLRDKTDGAMQAHEDAQREVQ 726
Cdd:TIGR02169  246 LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEqlrvkekiGELEAEIASLERSIAEKERELEDAEERLA 325

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  727 RLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLE 806
Cdd:TIGR02169  326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK 405

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  807 GKRSVLAKELVEVREALsratlqrdmlqaekAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDK 886
Cdd:TIGR02169  406 RELDRLQEELQRLSEEL--------------ADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  887 LDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSL----RVAEQAQEALEqqlptlrhe 962
Cdd:TIGR02169  472 YDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVaqlgSVGERYATAIE--------- 542

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  963 rSQLQEQLAQEAAWRELEAERAQlqsqlqreqeELLARLEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKT 1042
Cdd:TIGR02169  543 -VAAGNRLNNVVVEDDAVAKEAI----------ELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPK 611

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1043 ALSEKLMGTRHSLATISLEmerqkrdaQSRQEQDRSTVNALTSELRD----------LRAQREEAAAAHAQEVRRLQEQA 1112
Cdd:TIGR02169  612 YEPAFKYVFGDTLVVEDIE--------AARRLMGKYRMVTLEGELFEksgamtggsrAPRGGILFSRSEPAELQRLRERL 683

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1113 RDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEEL 1192
Cdd:TIGR02169  684 EGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL 763

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1193 RSAVKKAESERISLKLANEDKEQKLAL------------LEEARTAVGKEAGELRTGLQEVERSRLEARRELQELRRQMK 1260
Cdd:TIGR02169  764 EARIEELEEDLHKLEEALNDLEARLSHsripeiqaelskLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI 843

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1261 MLDSENTRLGRELAELQGRLALGERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEQEGEfRTRERRLLGSL 1340
Cdd:TIGR02169  844 DLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQ-IEKKRKRLSEL 922

                          730
                   ....*....|...
gi 1370455403 1341 EEARGTEKQQLDH 1353
Cdd:TIGR02169  923 KAKLEALEEELSE 935
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1475-1944 3.09e-17

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 88.46  E-value: 3.09e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1475 EAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQ 1554
Cdd:COG1196    298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1555 EESVRRSERERRATLDQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGE 1634
Cdd:COG1196    378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1635 LQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEES-----------EGALRDKVRGLTE 1703
Cdd:COG1196    458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAlllaglrglagAVAVLIGVEAAYE 537

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1704 ALAQSSASLNSTRDKNLHLQKALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQ 1783
Cdd:COG1196    538 AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYV 617

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1784 QLREVLRQRQEGEAAALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRSH 1863
Cdd:COG1196    618 LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1864 EDTVRLSAEKGRLDRTLTGAELELAEAQRQIQQLEAQVVVLEQSHSPAQLEVDAQQQQLELQQEVERLRSAQAQTERTLE 1943
Cdd:COG1196    698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777


                   .
gi 1370455403 1944 A 1944
Cdd:COG1196    778 A 778
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 942-1412 4.96e-17

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 87.68  E-value: 4.96e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  942 LRVAEQAQEALEQQLPTLRHERSQLQEQLAQ-EAAWRELEAERAQLQSQLQREQEEL------LARLEAEKEELSEEIAA 1014
Cdd:COG1196    234 LRELEAELEELEAELEELEAELEELEAELAElEAELEELRLELEELELELEEAQAEEyellaeLARLEQDIARLEERRRE 313

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1015 LQQERDEGLLLAESEKQQALSLKESEKTALSEKLMgtrhsLATISLEMERQKRDAQSRQEQDRSTVNALTSELRDLRAQR 1094
Cdd:COG1196    314 LEERLEELEEELAELEEELEELEEELEELEEELEE-----AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1095 EEAAAAHAQEVRRLQEQARdlgkQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRS 1174
Cdd:COG1196    389 LEALRAAAELAAQLEELEE----AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1175 LGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQK----LALLEEARTAVGKEAGELRTGLQEVERSRLEARR 1250
Cdd:COG1196    465 LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFlegvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL 544

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1251 ELQELRRQMKMLDSENTRLGRELAELQGRLAL--GERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEQEGE 1328
Cdd:COG1196    545 AAALQNIVVEDDEVAAAAIEYLKAAKAGRATFlpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLG 624

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1329 FRTRERRLLGSLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRLSAAEGRAQGLEAELARVEVQRRAAEAQLGGLRS 1408
Cdd:COG1196    625 RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEE 704


                   ....
gi 1370455403 1409 ALRR 1412
Cdd:COG1196    705 EERE 708
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1480-1973 6.91e-17

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 87.30  E-value: 6.91e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1480 ALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQEESVR 1559
Cdd:COG1196    233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1560 RSERERRATLDQVATLERSLQA-------TESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLE 1632
Cdd:COG1196    313 ELEERLEELEEELAELEEELEEleeeleeLEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1633 GELQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTEALAQSSASL 1712
Cdd:COG1196    393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1713 NSTRDKNLHLQKALTACEHDRQVLQERLDAARQALSEAR--KQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLR 1790
Cdd:COG1196    473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKaaLLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1791 QRQEGEAAALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRSHEDTVRLS 1870
Cdd:COG1196    553 VEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL 632

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1871 AEKGRLDRTLTGAELELAEAQRQIQQLEAQVVVLEQSHSPAQLEVDAQQQQLELQQEVERLRSAQAQTERTLEARERAHR 1950
Cdd:COG1196    633 EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712

                          490       500
                   ....*....|....*....|...
gi 1370455403 1951 QRVRGLEEQVSTLKGQLQQELRR 1973
Cdd:COG1196    713 EEERLEEELEEEALEEQLEAERE 735
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 950-1838 4.09e-16

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 85.12  E-value: 4.09e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  950 EALEQQLPTLRHERSQLQ------------EQLAQEAAWRELEAERAQLQSQLQREQEELlARLEAEKEELSEEIAALQQ 1017
Cdd:TIGR02169  194 DEKRQQLERLRREREKAEryqallkekreyEGYELLKEKEALERQKEAIERQLASLEEEL-EKLTEEISELEKRLEEIEQ 272

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1018 ERDEglllaESEKQQALSLKESektalseklmgtrhslatisLEMERQKRDAQSRQEQDRSTVNALTSELRDLRAQREEA 1097
Cdd:TIGR02169  273 LLEE-----LNKKIKDLGEEEQ--------------------LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1098 AAAHAQEVRRLQEQARDLGKQRdsclREAEELRTQLRLLEDARDGLRRELLEAQRKLRESqegrevqRQEAGELRRSLGE 1177
Cdd:TIGR02169  328 EAEIDKLLAEIEELEREIEEER----KRRDKLTEEYAELKEELEDLRAELEEVDKEFAET-------RDELKDYREKLEK 396

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1178 GAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELRR 1257
Cdd:TIGR02169  397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1258 QMKMLDSENTRLGRELAELQGRLALGERAEKESRRETLGLRQRLlkgEASLEVMRQELQVaqrklqeqegefrtrERRLL 1337
Cdd:TIGR02169  477 EYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASI---QGVHGTVAQLGSV---------------GERYA 538

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1338 GSLEEARGTEKQ------QLDHARGLELKLEAARAEAAELGLRLSAAEGRAQGLEAE-------LARVEVQRRAAEAQLG 1404
Cdd:TIGR02169  539 TAIEVAAGNRLNnvvvedDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEdgvigfaVDLVEFDPKYEPAFKY 618

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1405 GLRSAL--------RRGLGLGRAPSPAPRPVPGSPARDAPA-EGSGEGLNSPSTLECSPGSQPpspgpatspaspdlDPE 1475
Cdd:TIGR02169  619 VFGDTLvvedieaaRRLMGKYRMVTLEGELFEKSGAMTGGSrAPRGGILFSRSEPAELQRLRE--------------RLE 684

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1476 AVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQE 1555
Cdd:TIGR02169  685 GLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELE 764

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1556 ESVRRSERERRATLDQVATLERSLqateselraSQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGEL 1635
Cdd:TIGR02169  765 ARIEELEEDLHKLEEALNDLEARL---------SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI 835

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1636 QrsrlglsDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGAL---RDKVRGLTEALAQSSASL 1712
Cdd:TIGR02169  836 Q-------ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLkkeRDELEAQLRELERKIEEL 908

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1713 NSTRDKNLHLQKALTAcehDRQVLQERLDaarqALSEARKQSSSLGEQVQTLRgevaDLELQRVEAEGQLQQLREVLRQR 1792
Cdd:TIGR02169  909 EAQIEKKRKRLSELKA---KLEALEEELS----EIEDPKGEDEEIPEEELSLE----DVQAELQRVEEEIRALEPVNMLA 977

                          890       900       910       920
                   ....*....|....*....|....*....|....*....|....*.
gi 1370455403 1793 QEGEAAALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSA 1838
Cdd:TIGR02169  978 IQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEA 1023
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 213-972 7.21e-15

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 80.87  E-value: 7.21e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  213 LQEENQLLQQELSRVEDLLAQSRAERDELAIKYNAVSERLEQALrlepgeletqeprglvRQSVELRRQLQEEQAsyrrK 292
Cdd:TIGR02168  286 LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE----------------SKLDELAEELAELEE----K 345

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  293 LQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLLERSGELEQQRLRDTEHSQDLESALIRLEEEQQRSASLAQVNAM 372
Cdd:TIGR02168  346 LEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  373 LREQLDQAgsANQALSEDIRKVtndwTRCRKELEHREAAWRREEESFNAYFSNEHSRLLLLWRQVvgfRRLVSEVKMFte 452
Cdd:TIGR02168  426 LLKKLEEA--ELKELQAELEEL----EEELEELQEELERLEEALEELREELEEAEQALDAAEREL---AQLQARLDSL-- 494

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  453 RDLLQLGGELARTSRAVQEAGLGLSTGLRLAESRAEAALEKQALLQAQLEEQLRDKVLREKDLAQQQMQSDLDKAdlSAR 532
Cdd:TIGR02168  495 ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNE--LGR 572

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  533 VTELGLAVKRlekqnlekdqVNKDLTEKLEALESLRLQEQAALETEdgeglqqTLRDLAQAVLSDSESGVQLSGSERTAD 612
Cdd:TIGR02168  573 VTFLPLDSIK----------GTEIQGNDREILKNIEGFLGVAKDLV-------KFDPKLRKALSYLLGGVLVVDDLDNAL 635

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  613 ASNGSLRGLSGQRTPSpprrsspgrGRSPRRGPSPACSDSSTlalIHSALHKRQlQVQDMRGRYEASQDLLGTLRKQLSD 692
Cdd:TIGR02168  636 ELAKKLRPGYRIVTLD---------GDLVRPGGVITGGSAKT---NSSILERRR-EIEELEEKIEELEEKIAELEKALAE 702

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  693 SESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRR 772
Cdd:TIGR02168  703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  773 QRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRV 852
Cdd:TIGR02168  783 EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  853 ELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSAL-QGRQRQAEQEATVAREEQERLEELRLEQ 931
Cdd:TIGR02168  863 ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELrRELEELREKLAQLELRLEGLEVRIDNLQ 942

                          730       740       750       760
                   ....*....|....*....|....*....|....*....|.
gi 1370455403  932 EVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQ 972
Cdd:TIGR02168  943 ERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1267-1900 9.26e-15

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 80.37  E-value: 9.26e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1267 TRLGRELAELQGRLA-LGERAEKESRRETLGLRQRLLKGEASLevmrQELQVAQRKLQEQEGEFRTRERRLLGSLEEARG 1345
Cdd:COG1196    189 ERLEDILGELERQLEpLERQAEKAERYRELKEELKELEAELLL----LKLRELEAELEELEAELEELEAELEELEAELAE 264

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1346 TEKQqldhARGLELKLEAARAEAAELGLRLSAAEGRAQGLEAELARVEVQRRAAEAQLGGLRSALRRglglgrapspapr 1425
Cdd:COG1196    265 LEAE----LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE------------- 327

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1426 pvpgspardapaegsgeglnspstlecSPGSQPPSPGPAtspaspdldpEAVRGALREFLQELRSAQRERDELRTQTSAL 1505
Cdd:COG1196    328 ---------------------------LEEELEELEEEL----------EELEEELEEAEEELEEAEAELAEAEEALLEA 370

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1506 NRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQEESVRRSERERRATLDQVATLERSLQATESE 1585
Cdd:COG1196    371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1586 LRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLGLSDREAQAQALQDRVDSLQRQVAD 1665
Cdd:COG1196    451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLI 530

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1666 SEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTEALAQSSASLNSTRDKNLHLQKALtaceHDRQVLQERLDAARQ 1745
Cdd:COG1196    531 GVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA----LARGAIGAAVDLVAS 606

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1746 ALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQEGEAAALNTVQKLQDERRLLQERLGSLQRALA 1825
Cdd:COG1196    607 DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1826 QLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRSHEDTVRLSAEKGRLDRTLTGAELEL--------------AEAQ 1891
Cdd:COG1196    687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLeeealeelpeppdlEELE 766


                   ....*....
gi 1370455403 1892 RQIQQLEAQ 1900
Cdd:COG1196    767 RELERLERE 775
PTZ00121 PTZ00121
MAEBL; Provisional
 694-1251 1.28e-14

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 80.19  E-value: 1.28e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  694 ESERRALEEQLQRLRDKTDGAMQAHEDAQReVQRLRSANELLSREKSNLAH-SLQVAQQQAEELRQErEKLQAAQEELRR 772
Cdd:PTZ00121  1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKK-AEEERNNEEIRKFEEARMAHfARRQAAIKAEEARKA-DELKKAEEKKKA 1292

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  773 QRDRLEEEQE--DAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREAlsrATLQRDMLQAEKAEVAEALTKAEAG 850
Cdd:PTZ00121  1293 DEAKKAEEKKkaDEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA---AEAAKAEAEAAADEAEAAEEKAEAA 1369

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  851 rvELELSMTKLRAEEASLQ-DSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAE----QEATVAREEQERLE 925
Cdd:PTZ00121  1370 --EKKKEEAKKKADAAKKKaEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEkkkaDEAKKKAEEAKKAD 1447

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  926 ELRLEQEVARQGlEGSLRVAEQAQEALEQQLptlRHERSQLQEQLAQEAAWRELEAERAQLQSQLQREQEEllARLEAEK 1005
Cdd:PTZ00121  1448 EAKKKAEEAKKA-EEAKKKAEEAKKADEAKK---KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE--AKKAEEA 1521

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1006 EELSEEIAALQQERDEGLLLAEsEKQQALSLKESEKTALSEklmgtrhslatislemERQKRDAQSRQEQDRSTVNALTS 1085
Cdd:PTZ00121  1522 KKADEAKKAEEAKKADEAKKAE-EKKKADELKKAEELKKAE----------------EKKKAEEAKKAEEDKNMALRKAE 1584

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1086 ELRDLRAQREEAAAAHAQEVRRLQ-EQAR-----------------------DLGKQRDSCLREAEELRTQLRLLEDARD 1141
Cdd:PTZ00121  1585 EAKKAEEARIEEVMKLYEEEKKMKaEEAKkaeeakikaeelkkaeeekkkveQLKKKEAEEKKKAEELKKAEEENKIKAA 1664

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1142 GLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSA--VKKAESER-ISLKLANEDKEQKLA 1218
Cdd:PTZ00121  1665 EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAeeLKKAEEENkIKAEEAKKEAEEDKK 1744

                          570       580       590
                   ....*....|....*....|....*....|...
gi 1370455403 1219 LLEEARTAVGkEAGELRTGLQEVERSRLEARRE 1251
Cdd:PTZ00121  1745 KAEEAKKDEE-EKKKIAHLKKEEEKKAEEIRKE 1776
PTZ00121 PTZ00121
MAEBL; Provisional
 696-1360 4.92e-14

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 78.26  E-value: 4.92e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  696 ERRALEEQLQRLRDKTDGAMQAHEDAqREVQRLRSANELLSREKSNLAHSLQVAQQ--QAEELRQEREKLQAAQEELRRQ 773
Cdd:PTZ00121  1138 DARKAEEARKAEDAKRVEIARKAEDA-RKAEEARKAEDAKKAEAARKAEEVRKAEElrKAEDARKAEAARKAEEERKAEE 1216

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  774 RDRLEEEQE-DAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQrdmlqAEKAEVAEALTKAEAGRV 852
Cdd:PTZ00121  1217 ARKAEDAKKaEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIK-----AEEARKADELKKAEEKKK 1291

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  853 --ELELSMTKLRAEEASLQ-DSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQERLEELRL 929
Cdd:PTZ00121  1292 adEAKKAEEKKKADEAKKKaEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  930 EQEVARQGLEGSLRVAEQAQEAleQQLPTLRHERSQLQEQLAQEAAWRElEAERAQLQSQLQREQEELLARLEAEKEELS 1009
Cdd:PTZ00121  1372 KKEEAKKKADAAKKKAEEKKKA--DEAKKKAEEDKKKADELKKAAAAKK-KADEAKKKAEEKKKADEAKKKAEEAKKADE 1448

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1010 EEIAALQQERDEGLLLAESEKQQALSLKESEKTALSEKLMGTRHSLATISLEMERQKRDAQSRQEQDRSTVNAltselrd 1089
Cdd:PTZ00121  1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA------- 1521

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1090 lraqreeaaaahaqevRRLQEQARDLGKQRDSCLREAEELRtqlrlledardglRRELLEAQRKLRESQEGREVQRQEAG 1169
Cdd:PTZ00121  1522 ----------------KKADEAKKAEEAKKADEAKKAEEKK-------------KADELKKAEELKKAEEKKKAEEAKKA 1572

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1170 ELRRSLgegakereALRRSNEelrsaVKKAESERIS--LKLANEDKEQKLALL---EEARTAVG--KEAGELRTGLQEVE 1242
Cdd:PTZ00121  1573 EEDKNM--------ALRKAEE-----AKKAEEARIEevMKLYEEEKKMKAEEAkkaEEAKIKAEelKKAEEEKKKVEQLK 1639

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1243 RSRLEARRELQELRR----------QMKMLDSENTRLGREL---AELQGRLALGERAEKESRRETLGLRQRLLKGEASLE 1309
Cdd:PTZ00121  1640 KKEAEEKKKAEELKKaeeenkikaaEEAKKAEEDKKKAEEAkkaEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719

                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1370455403 1310 VMRQELQVAQRKLQEQEGEFRTRERRllgsLEEARGT--EKQQLDHARGLELK 1360
Cdd:PTZ00121  1720 ELKKAEEENKIKAEEAKKEAEEDKKK----AEEAKKDeeEKKKIAHLKKEEEK 1768
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 952-1707 7.75e-14

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 77.40  E-value: 7.75e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  952 LEQQLPTLRHERSQLQEQLAQEAAWRELEAERAQLQsqLQREQEELlarleaekEELSEEIAALQQERDEgLLLAESEKQ 1031
Cdd:TIGR02168  198 LERQLKSLERQAEKAERYKELKAELRELELALLVLR--LEELREEL--------EELQEELKEAEEELEE-LTAELQELE 266

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1032 QALSLKESEKTALSEK---LMGTRHSLATISLEMERQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAqevrRL 1108
Cdd:TIGR02168  267 EKLEELRLEVSELEEEieeLQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA----EL 342

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1109 QEQARDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRS 1188
Cdd:TIGR02168  343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQE 422

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1189 NEELRSAVKKAESERISLKLANEDKEqkLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTR 1268
Cdd:TIGR02168  423 IEELLKKLEEAELKELQAELEELEEE--LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN 500

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1269 L-------------GRELAELQGRL----------------ALGERAEK---ESRRETLGLRQRLLKGEASLEVMRQELQ 1316
Cdd:TIGR02168  501 LegfsegvkallknQSGLSGILGVLselisvdegyeaaieaALGGRLQAvvvENLNAAKKAIAFLKQNELGRVTFLPLDS 580

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1317 VAQRKLQEQEGEFRTRERRLLGSLEEARGTEKQ----------------QLDHARGLELKLEAARAEAAELGLRLS---- 1376
Cdd:TIGR02168  581 IKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyllggvlvvdDLDNALELAKKLRPGYRIVTLDGDLVRpggv 660

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1377 ---AAEGRAQG----------LEAELARVEVQRRAAEAQLGGLRSALRRGLGLGRApspaprpvpgspARDAPAEGSGEG 1443
Cdd:TIGR02168  661 itgGSAKTNSSilerrreieeLEEKIEELEEKIAELEKALAELRKELEELEEELEQ------------LRKELEELSRQI 728

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1444 LNSPSTLECSPGSQppspgpatspaspdldpEAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRA 1523
Cdd:TIGR02168  729 SALRKDLARLEAEV-----------------EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1524 RQLQKAVAESEEarrsvdgRLSGVQAELALQEESVRRSERERRATLDQVATLERSLQATESELRASQEKISKMKANETKL 1603
Cdd:TIGR02168  792 EQLKEELKALRE-------ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL 864

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1604 EGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGA 1683
Cdd:TIGR02168  865 EELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944

                          810       820       830
                   ....*....|....*....|....*....|....*....
gi 1370455403 1684 LA---------------KVEESEGALRDKVRGLTEALAQ 1707
Cdd:TIGR02168  945 LSeeysltleeaealenKIEDDEEEARRRLKRLENKIKE 983
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1491-1956 1.04e-13

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 76.88  E-value: 1.04e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1491 AQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDG-RLSGVQAELALQEESVRRSERERRATL 1569
Cdd:COG4913    286 AQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGdRLEQLEREIERLERELEERERRRARLE 365

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1570 DQVATLERSLQATESELRASQEKIskmKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLGLSD----- 1644
Cdd:COG4913    366 ALLAALGLPLPASAEEFAALRAEA---AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNiparl 442

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1645 ---REAQAQALQDRVDSLQ-----RQVADSEVK------------AGTLQLTVERLNGALAKVEESEGALR---DKVRGL 1701
Cdd:COG4913    443 lalRDALAEALGLDEAELPfvgelIEVRPEEERwrgaiervlggfALTLLVPPEHYAAALRWVNRLHLRGRlvyERVRTG 522

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1702 TEALAQSSASLNSTRDKnlhlqkaLTACEHD-----RQVLQERLDAA-----------RQALSEA--RKQSSSLGE---- 1759
Cdd:COG4913    523 LPDPERPRLDPDSLAGK-------LDFKPHPfrawlEAELGRRFDYVcvdspeelrrhPRAITRAgqVKGNGTRHEkddr 595

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1760 ---------------QVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQEgEAAALNTVQKLQDErrllQERLGSLQRAL 1824
Cdd:COG4913    596 rrirsryvlgfdnraKLAALEAELAELEEELAEAEERLEALEAELDALQE-RREALQRLAEYSWD----EIDVASAEREI 670

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1825 AQLEAEKREVERSALRLEkdrvALRRTLDKVEREKLRSHEDTVRLSAEKGRLDRTLTGAELELAEAQRQIQQLEAQVVVl 1904
Cdd:COG4913    671 AELEAELERLDASSDDLA----ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL- 745

                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1370455403 1905 eqshsPAQLEVDAQQQQLELQQEVERLRSAQAQTERTLEARERAHRQRVRGL 1956
Cdd:COG4913    746 -----ELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERA 792
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1548-1963 1.28e-13

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 76.51  E-value: 1.28e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1548 QAELALQEESVRRSERERRATL--DQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLE 1625
Cdd:COG1196    208 QAEKAERYRELKEELKELEAELllLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ 287

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1626 LQRRSLEGELQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTEAL 1705
Cdd:COG1196    288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1706 AQSSASLNSTRDKNLHLQKALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQL 1785
Cdd:COG1196    368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1786 REVLRQRQEGEAAALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRSHED 1865
Cdd:COG1196    448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA 527

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1866 TVRLSAEKGRLDRTLTGAELELAEAQRQIQQLEAQVVVLEQSHSPAQ--LEVDAQQQQLELQQEVERLRSAQAQTERTLE 1943
Cdd:COG1196    528 VLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAtfLPLDKIRARAALAAALARGAIGAAVDLVASD 607

                          410       420
                   ....*....|....*....|
gi 1370455403 1944 ARERAHRQRVRGLEEQVSTL 1963
Cdd:COG1196    608 LREADARYYVLGDTLLGRTL 627
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
681-1201 2.21e-13

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 75.85  E-value: 2.21e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  681 DLLGTLRKQLSDSESERRALEEQ---LQRLRDKTDGAMQAHEDAQREVQRLRSANELLS-------REKSNLAHSLQVAQ 750
Cdd:PRK02224   206 ERLNGLESELAELDEEIERYEEQreqARETRDEADEVLEEHEERREELETLEAEIEDLRetiaeteREREELAEEVRDLR 285

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  751 QQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQR 830
Cdd:PRK02224   286 ERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEA 365

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  831 DMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQA 910
Cdd:PRK02224   366 AELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEA 445

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  911 EQeatvareeqerlEELRLEQEVARQGLEGSLRV-----AEQAQEALEQQLPTLRHERSQLQEQLAQEAAWRELEAERAQ 985
Cdd:PRK02224   446 EA------------LLEAGKCPECGQPVEGSPHVetieeDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIER 513

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  986 LQSQLQREQEellarleaekeelseeiaaLQQERDEGLllaeSEKQQALSLKESEKTALSEKLMGTRHSLATISLEMERq 1065
Cdd:PRK02224   514 LEERREDLEE-------------------LIAERRETI----EEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE- 569

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1066 KRDAQSRQEQDRSTVNALTSELRDLrAQREEAAAAHAQEVRRLQEQARDLGKQRDSCLREAEELRTQLRLLEDARDGLRR 1145
Cdd:PRK02224   570 AREEVAELNSKLAELKERIESLERI-RTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARI 648

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370455403 1146 ELLEAQR------------KLRESQEGREVQRQEAGELRRSLgegaKEREALRRSNEELRSAVKKAES 1201
Cdd:PRK02224   649 EEAREDKeraeeyleqveeKLDELREERDDLQAEIGAVENEL----EELEELRERREALENRVEALEA 712
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 1572-1907 2.29e-11

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 69.33  E-value: 2.29e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1572 VATLERSLQATESELRASQEKISKmkaNETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLGLSDREAQAQA 1651
Cdd:TIGR02169  165 VAEFDRKKEKALEELEEVEENIER---LDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEA 241

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1652 LQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKV--------EESEGALRDKVRGLTEALAQSSASLNSTRDKNLHLQ 1723
Cdd:TIGR02169  242 IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELnkkikdlgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1724 KALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQEGEAAALNTV 1803
Cdd:TIGR02169  322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1804 QKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRSHEDTVRLSAEKGRLDRTLTGA 1883
Cdd:TIGR02169  402 NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481

                          330       340
                   ....*....|....*....|....
gi 1370455403 1884 ELELAEAQRQIQQLEAQVVVLEQS 1907
Cdd:TIGR02169  482 EKELSKLQRELAEAEAQARASEER 505
PTZ00121 PTZ00121
MAEBL; Provisional
 686-1222 3.79e-11

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 69.01  E-value: 3.79e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  686 LRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQA 765
Cdd:PTZ00121  1320 AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  766 AQEELRRQRDRLEEEQEDAVQDGARVRRElerSHRQLEQLEGKrsvlAKELVEVREALSRATlqrdmlQAEKAEvaEALT 845
Cdd:PTZ00121  1400 AEEDKKKADELKKAAAAKKKADEAKKKAE---EKKKADEAKKK----AEEAKKADEAKKKAE------EAKKAE--EAKK 1464

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  846 KAEAGRVELELsmtKLRAEEASLQDSLSKLSalneslAQDKLDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQERLE 925
Cdd:PTZ00121  1465 KAEEAKKADEA---KKKAEEAKKADEAKKKA------EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  926 ELRLEQEVARQGLEgSLRVAEQAQEAleqqlptlrhERSQLQEQLAQEAAWRELEAERAQLQSQLQREQEELLARLEAEK 1005
Cdd:PTZ00121  1536 ADEAKKAEEKKKAD-ELKKAEELKKA----------EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE 1604

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1006 eelseeiaalQQERDEGLLLAESEKQQALSLKESEKTALSEKLMGTRhslatislEMERQKRDAQSRQEQDRSTVNAlts 1085
Cdd:PTZ00121  1605 ----------KKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK--------EAEEKKKAEELKKAEEENKIKA--- 1663

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1086 elrdlrAQREEAAAAHAQEVRRLQEQARDLGKQRDSCLREAEELRTQlrlledarDGLRRELLEAQRKLRESQEGREVQR 1165
Cdd:PTZ00121  1664 ------AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA--------EELKKKEAEEKKKAEELKKAEEENK 1729

                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1370455403 1166 QEAGELRRSLGEGAKEREALRRSNEELRsavKKAESERISLKLANEDKEQKLALLEE 1222
Cdd:PTZ00121  1730 IKAEEAKKEAEEDKKKAEEAKKDEEEKK---KIAHLKKEEEKKAEEIRKEKEAVIEE 1783
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 698-1001 4.86e-11

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 68.17  E-value: 4.86e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  698 RALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRL 777
Cdd:TIGR02169  670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSL 749

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  778 EEEQEDavqdgarVRRELERSHRQLEQLEgkrsvlaKELVEVREALsrATLQRDMLQAEKAEVAEALTKAEAGRVELELS 857
Cdd:TIGR02169  750 EQEIEN-------VKSELKELEARIEELE-------EDLHKLEEAL--NDLEARLSHSRIPEIQAELSKLEEEVSRIEAR 813

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  858 MTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEVARQG 937
Cdd:TIGR02169  814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE 893

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1370455403  938 LEGSLRVAEQAQEALEQQLPTLRHERSQLQEQL-AQEAAWRELEAERAQLQS---------QLQREQEELLARL 1001
Cdd:TIGR02169  894 LEAQLRELERKIEELEAQIEKKRKRLSELKAKLeALEEELSEIEDPKGEDEEipeeelsleDVQAELQRVEEEI 967
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1475-1972 1.61e-10

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 66.60  E-value: 1.61e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1475 EAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARrsvdgrlSGVQAELALq 1554
Cdd:PRK02224   233 RETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEER-------DDLLAEAGL- 304

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1555 eesvrrSERERRATLDQVATLERSLQATESELRASQEKIskmkaneTKLEGDKRRLKEVLDASESRTVKLELQRRSLEGE 1634
Cdd:PRK02224   305 ------DDADAEAVEARREELEDRDEELRDRLEECRVAA-------QAHNEEAESLREDADDLEERAEELREEAAELESE 371

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1635 LQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTEALAQSSA---- 1710
Cdd:PRK02224   372 LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAllea 451

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1711 -----------------SLNSTRDKNLHLQKALTACEHDRQVLQERLDAArQALSEARKQSSSLGEQVQTLRGEVADLEL 1773
Cdd:PRK02224   452 gkcpecgqpvegsphveTIEEDRERVEELEAELEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERREDLEELIAERRE 530

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1774 QRVEAEGQLQQLREVLRQRQEGEAAALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEK---------- 1843
Cdd:PRK02224   531 TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAiadaedeier 610

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1844 --DRVALRRTLDKVEREKLRSHEDTVRLSAEKGRLDRtLTGAELELAEAQRQIQQLEAQVVVLEQSHSPAQLEVDAqqqQ 1921
Cdd:PRK02224   611 lrEKREALAELNDERRERLAEKRERKRELEAEFDEAR-IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGA---V 686

                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1370455403 1922 LELQQEVERLRSAQAQTERTLEARERAHRQrvrglEEQVSTLKGQLQQELR 1972
Cdd:PRK02224   687 ENELEELEELRERREALENRVEALEALYDE-----AEELESMYGDLRAELR 732
PTZ00121 PTZ00121
MAEBL; Provisional
 1027-1741 1.72e-10

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 66.70  E-value: 1.72e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1027 ESEKQQALSLKESEKTALSEKLMGTRHSLATISLEMERQKRDAQSRQEqdrstvnaltsELRDLRAQREEAAAAHAQEVR 1106
Cdd:PTZ00121  1078 DFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAE-----------DARKAEEARKAEDARKAEEAR 1146

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1107 RLQEQARDLGKQRDSCLREAEELR--TQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQE----AGELRRSlgEGAK 1180
Cdd:PTZ00121  1147 KAEDAKRVEIARKAEDARKAEEARkaEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEeerkAEEARKA--EDAK 1224

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1181 EREALRRSNEelrsAVKKAESERISLKLANEDKEQKLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELRRqmk 1260
Cdd:PTZ00121  1225 KAEAVKKAEE----AKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKK--- 1297

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1261 mldSENTRLGREL---AELQGRLALGERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEQEGEFRTRERRLL 1337
Cdd:PTZ00121  1298 ---AEEKKKADEAkkkAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1338 GSLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRlSAAEGRAQGLEAElARVEVQRRAAEAQlgglrsalRRGLGLG 1417
Cdd:PTZ00121  1375 EAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK-KAAAAKKKADEAK-KKAEEKKKADEAK--------KKAEEAK 1444

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1418 RAPSPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPDLDPEAVRGALREFLQELRSAQRER-- 1495
Cdd:PTZ00121  1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKka 1524

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1496 DELRTQTSALNRQLAEMEAERDSA--TSRARQLQKA--VAESEEARRSVDGRLSGV-QAELALQEESVRRSERERRATLD 1570
Cdd:PTZ00121  1525 DEAKKAEEAKKADEAKKAEEKKKAdeLKKAEELKKAeeKKKAEEAKKAEEDKNMALrKAEEAKKAEEARIEEVMKLYEEE 1604

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1571 QVATLERSLQATES-----ELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRS---RLGL 1642
Cdd:PTZ00121  1605 KKMKAEEAKKAEEAkikaeELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAeeaKKAE 1684

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1643 SDREAQAQALQ------DRVDSLQRQVADSEVKAGTLQLTVERlngALAKVEESEGALRDKVRGLTEALAQSSASLNSTR 1716
Cdd:PTZ00121  1685 EDEKKAAEALKkeaeeaKKAEELKKKEAEEKKKAEELKKAEEE---NKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761

                          730       740
                   ....*....|....*....|....*
gi 1370455403 1717 DKNLHLQKALTACEHDRQVLQERLD 1741
Cdd:PTZ00121  1762 LKKEEEKKAEEIRKEKEAVIEEELD 1786
PTZ00121 PTZ00121
MAEBL; Provisional
 688-1079 2.12e-10

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 66.32  E-value: 2.12e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  688 KQLSDSESERRALEEQLQRLRDKTDGAMQAhEDAQREVQRLRSANELlsREKSNLAHSLQVAQQQAEELRQEREKLQAAQ 767
Cdd:PTZ00121  1404 KKKADELKKAAAAKKKADEAKKKAEEKKKA-DEAKKKAEEAKKADEA--KKKAEEAKKAEEAKKKAEEAKKADEAKKKAE 1480

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  768 EelRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRdmlqAEKAEVAEALTKA 847
Cdd:PTZ00121  1481 E--AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK----AEEKKKADELKKA 1554

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  848 EagrvELELSMTKLRAEEASLQDSlSKLSALNESLAQDKLDLNRL--VAQLEEEKSALQGRQRQAEQEATVAREEQERLE 925
Cdd:PTZ00121  1555 E----ELKKAEEKKKAEEAKKAEE-DKNMALRKAEEAKKAEEARIeeVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE 1629

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  926 ELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQEAAWRELEAERAQLQSQLQREQEEL--LARLEA 1003
Cdd:PTZ00121  1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAkkAEELKK 1709

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1004 EKEELSEEIAALQQERDEGLLLAESEKQQA---------LSLKESEKTALSEKLMGTRHSLATISLEMER------QKRD 1068
Cdd:PTZ00121  1710 KEAEEKKKAEELKKAEEENKIKAEEAKKEAeedkkkaeeAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAvieeelDEED 1789

                          410
                   ....*....|.
gi 1370455403 1069 AQSRQEQDRST 1079
Cdd:PTZ00121  1790 EKRRMEVDKKI 1800
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
664-827 3.28e-10

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 65.71  E-value: 3.28e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  664 KRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAH--------EDAQREVQRLRSANELL 735
Cdd:COG4913    278 RAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIrgnggdrlEQLEREIERLERELEER 357

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  736 SREKSNLAHSLQVAQQQ----AEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSV 811
Cdd:COG4913    358 ERRRARLEALLAALGLPlpasAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSN 437

                          170
                   ....*....|....*.
gi 1370455403  812 LAKELVEVREALSRAT 827
Cdd:COG4913    438 IPARLLALRDALAEAL 453
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
668-1281 7.01e-10

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 64.55  E-value: 7.01e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  668 QVQDMRGRYEASQDLLGTLRKQ------LSDSESERRALEEQLQRLRDktDGAMQAHEDAQREVQRLRSANELLSREKSN 741
Cdd:COG4913    229 ALVEHFDDLERAHEALEDAREQiellepIRELAERYAAARERLAELEY--LRAALRLWFAQRRLELLEAELEELRAELAR 306

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  742 LAHSLQVAQQQAEELRQEREKLQAAQEEL-RRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVR 820
Cdd:COG4913    307 LEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALR 386

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  821 EALSRAtlqRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQ--------DSLSKLSALNESLAQDKLDLnRL 892
Cdd:COG4913    387 AEAAAL---LEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLErrksnipaRLLALRDALAEALGLDEAEL-PF 462

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  893 VAQL----EEEKS-------ALQGRQR----QAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQeALEQQLP 957
Cdd:COG4913    463 VGELievrPEEERwrgaierVLGGFALtllvPPEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPD-SLAGKLD 541

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  958 TLRHE-RSQLQEQLAQEAAWR------ELEAERAQLQSQLQREQEELLARLEAEKEEL---------SEEIAALQQERDE 1021
Cdd:COG4913    542 FKPHPfRAWLEAELGRRFDYVcvdspeELRRHPRAITRAGQVKGNGTRHEKDDRRRIRsryvlgfdnRAKLAALEAELAE 621

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1022 glllAESEKQQALSLKESEKTALseKLMGTRHSLATISLEMERQKRDAQSRQEQdrstVNALTSELRDLRAQREEaaaah 1101
Cdd:COG4913    622 ----LEEELAEAEERLEALEAEL--DALQERREALQRLAEYSWDEIDVASAERE----IAELEAELERLDASSDD----- 686

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1102 aqeVRRLQEQARDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRE-SQEGREVQRQEAGELRRSLGEGAK 1180
Cdd:COG4913    687 ---LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAaEDLARLELRALLEERFAAALGDAV 763

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1181 EREALRRSNEELRSAVKKAESERISL-KLANEDKEQKLALLEEARTAVGkEAGELRTGLQEVERSRLEARRElqelrrqm 1259
Cdd:COG4913    764 ERELRENLEERIDALRARLNRAEEELeRAMRAFNREWPAETADLDADLE-SLPEYLALLDRLEEDGLPEYEE-------- 834

                          650       660
                   ....*....|....*....|..
gi 1370455403 1260 KMLDSENTRLGRELAELQGRLA 1281
Cdd:COG4913    835 RFKELLNENSIEFVADLLSKLR 856
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 726-1393 1.29e-09

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 63.60  E-value: 1.29e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  726 QRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREklqaAQEELRRQRDRLEEEQEDAVQ------DGARVRRE--LER 797
Cdd:pfam15921   92 RRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERD----AMADIRRRESQSQEDLRNQLQntvhelEAAKCLKEdmLED 167

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  798 SHRQLEQL-------EGKRSVLAKELVEVREALSRATLQRDMLQAEK-AEVAEALTKAEAgrvELELSMTKLRAEEASLQ 869
Cdd:pfam15921  168 SNTQIEQLrkmmlshEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHfRSLGSAISKILR---ELDTEISYLKGRIFPVE 244

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  870 DSLSKLsalnESLAQDKLDLnrlvaQLEEEKSALQgrQRQAEQEATVAREEQERLEELRLEQEVARQgLEGSLRVAEQAQ 949
Cdd:pfam15921  245 DQLEAL----KSESQNKIEL-----LLQQHQDRIE--QLISEHEVEITGLTEKASSARSQANSIQSQ-LEIIQEQARNQN 312

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  950 EALEQQLPTLRHERSQLQEQLAQeaAWRELEAERAQLQSQLQREQEELL-ARLEAEKEELSEEIAALQQERdegLLLAES 1028
Cdd:pfam15921  313 SMYMRQLSDLESTVSQLRSELRE--AKRMYEDKIEELEKQLVLANSELTeARTERDQFSQESGNLDDQLQK---LLADLH 387

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1029 EKQQALSLKESEKTALSEKLMGTRHSLATISLEMERQKRDAQSRQeqdrSTVNALTSELRDLRAQREEAAAAHAQEVRRL 1108
Cdd:pfam15921  388 KREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLE----ALLKAMKSECQGQMERQMAAIQGKNESLEKV 463

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1109 QEQARDLGKQRDSCLREAEELRTQLRLLEDArdglRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRS 1188
Cdd:pfam15921  464 SSLTAQLESTKEMLRKVVEELTAKKMTLESS----ERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE 539

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1189 NEELRSAvkKAESERISLKLANEDK-----EQKLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELR------- 1256
Cdd:pfam15921  540 GDHLRNV--QTECEALKLQMAEKDKvieilRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKilkdkkd 617

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1257 RQMKMLDSENTRLGRELAELQGRLALGERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEQEGEFRTRERRL 1336
Cdd:pfam15921  618 AKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKL 697

                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1370455403 1337 LGSLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRLSAAEGRAQGLEAELARVE 1393
Cdd:pfam15921  698 KMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLE 754
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
751-1337 3.67e-09

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 62.24  E-value: 3.67e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  751 QQAEELRQEREKLQAAQEEL---RRQRDRLEEEQEDAvqdgarvrRELERSHRQLEQLEGKRSVLAKElvevrealsRAT 827
Cdd:COG4913    225 EAADALVEHFDDLERAHEALedaREQIELLEPIRELA--------ERYAAARERLAELEYLRAALRLW---------FAQ 287

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  828 LQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDslsklsALNESLAQDKLDLNRLVAQLEEEKSALQGRQ 907
Cdd:COG4913    288 RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEA------QIRGNGGDRLEQLEREIERLERELEERERRR 361

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  908 RQAEQEATVAREEQERLEELRLEqevARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLaqeaawRELEAERAQL- 986
Cdd:COG4913    362 ARLEALLAALGLPLPASAEEFAA---LRAEAAALLEALEEELEALEEALAEAEAALRDLRREL------RELEAEIASLe 432

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  987 --QSQLQREQEELLARLEaekeelseeiAALQQERDEGLLLAEsekqqALSLKESEK---TALsEKLMgtrHSLATISLE 1061
Cdd:COG4913    433 rrKSNIPARLLALRDALA----------EALGLDEAELPFVGE-----LIEVRPEEErwrGAI-ERVL---GGFALTLLV 493

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1062 MERQKRDAQS--RQEQDRSTVNalTSELRDLRAQREEAAAAHAQEVRRLQEQ---ARD-----LGKQRD-SCLREAEELR 1130
Cdd:COG4913    494 PPEHYAAALRwvNRLHLRGRLV--YERVRTGLPDPERPRLDPDSLAGKLDFKphpFRAwleaeLGRRFDyVCVDSPEELR 571

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1131 TQLRLL--------------EDARDGLRRELL---EAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELR 1193
Cdd:COG4913    572 RHPRAItragqvkgngtrheKDDRRRIRSRYVlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ 651

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1194 SAVKKAESERISLKLANE--DKEQKLALLEEARTAVGkeagELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRLGR 1271
Cdd:COG4913    652 RLAEYSWDEIDVASAEREiaELEAELERLDASSDDLA----ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEE 727

                          570       580       590       600       610       620
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370455403 1272 ELAELQGRLALGERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEQEGEFRTRERRLL 1337
Cdd:COG4913    728 ELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAM 793
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 742-984 1.71e-08

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 59.01  E-value: 1.71e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  742 LAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVRE 821
Cdd:COG4942     11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  822 ALSRATLQRDMLQAEKAEVAEALTKAEagrvelELSMTKLRAEEASLQDSLSKLSALNESLAQDKldlnRLVAQLEEEKS 901
Cdd:COG4942     91 EIAELRAELEAQKEELAELLRALYRLG------RQPPLALLLSPEDFLDAVRRLQYLKYLAPARR----EQAEELRADLA 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  902 ALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQEAAWRELEA 981
Cdd:COG4942    161 ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240


                   ...
gi 1370455403  982 ERA 984
Cdd:COG4942    241 ERT 243
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 684-1390 2.00e-08

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 59.60  E-value: 2.00e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  684 GTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSLQvaQQQAEELRQEREKL 763
Cdd:pfam02463  142 GKIEIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQ--AKKALEYYQLKEKL 219

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  764 QAAQEELRRQRDR-LEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRAT-LQRDMLQAEKAEVA 841
Cdd:pfam02463  220 ELEEEYLLYLDYLkLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQeEELKLLAKEEEELK 299

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  842 EALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQ 921
Cdd:pfam02463  300 SELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKK 379

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  922 ERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQEAAWRELEAERAQLQSQLQREQEELLARL 1001
Cdd:pfam02463  380 KLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELK 459

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1002 EAEKEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKTALSEKLMGTRHSLATISLEMERQKRDAQSRQEQDRSTV- 1080
Cdd:pfam02463  460 LLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVe 539

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1081 ---NALTSELRDLRAQREEAAAAHAQEVRRLQEQARDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRES 1157
Cdd:pfam02463  540 nykVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDD 619

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1158 QEGREVQRQEAGELRRSLGEGAKEREALRR---SNEELRSAVKKAESERISLKLANEDKEQKLALLEEARTAVGKEAGEL 1234
Cdd:pfam02463  620 KRAKVVEGILKDTELTKLKESAKAKESGLRkgvSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQL 699

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1235 RTGLQEVERSRLEARRELQELRRQMKMLDSENTRLGRELAELQGRLALGERAEKESRRETLGLRQRLLkgEASLEVMRQE 1314
Cdd:pfam02463  700 EIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKS--ELSLKEKELA 777

                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370455403 1315 LQVAQRKLQEQEGEFRTRERRLLGSLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRLSAAEGRAQGLEAELA 1390
Cdd:pfam02463  778 EEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 853
PTZ00121 PTZ00121
MAEBL; Provisional
 1106-1873 3.01e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 59.38  E-value: 3.01e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1106 RRLQEQARDL-------------GKQRDSCLREAEELR--TQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEagE 1170
Cdd:PTZ00121  1097 FGKAEEAKKTetgkaeearkaeeAKKKAEDARKAEEARkaEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAE--D 1174

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1171 LRRSlgEGAKEREALRRSnEELRSA--VKKAESERislKLANEDKEQKLALLEEARTAvgkeagelrtglQEVERSRlEA 1248
Cdd:PTZ00121  1175 AKKA--EAARKAEEVRKA-EELRKAedARKAEAAR---KAEEERKAEEARKAEDAKKA------------EAVKKAE-EA 1235

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1249 RRELQELRRQMKMLDSENTRLGRELAELQ-GRLALGERAEKESRRETLGLRQRLLKGEaslevmrqELQVAQRKLQEQEG 1327
Cdd:PTZ00121  1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHfARRQAAIKAEEARKADELKKAEEKKKAD--------EAKKAEEKKKADEA 1307

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1328 EFRTRERRllgSLEEARGTEKQQLDHARGLELKLEAARAEAAelglrlsAAEGRAQGLEAELARVEVQRRAAEaqlgglr 1407
Cdd:PTZ00121  1308 KKKAEEAK---KADEAKKKAEEAKKKADAAKKKAEEAKKAAE-------AAKAEAEAAADEAEAAEEKAEAAE------- 1370

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1408 saLRRGLGLGRAPSPAPRPVPGSPARDAPAEGSgeglnspstlECSPGSQPPSPGPATSPASPDLDPEAVRGALREFLQE 1487
Cdd:PTZ00121  1371 --KKKEEAKKKADAAKKKAEEKKKADEAKKKAE----------EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK 1438

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1488 LRSAQRERDELRTQtsALNRQLAEMEAERDSATSRARQLQKavaESEEARRSVDGRlsgVQAELALQEESVRRSERERRA 1567
Cdd:PTZ00121  1439 KAEEAKKADEAKKK--AEEAKKAEEAKKKAEEAKKADEAKK---KAEEAKKADEAK---KKAEEAKKKADEAKKAAEAKK 1510

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1568 TLDQVATLERSLQAteSELRASQEkisKMKANETKLEGDKRRLKEVLDASESRtvKLELQRRSLEGELQRSRLGLSDREA 1647
Cdd:PTZ00121  1511 KADEAKKAEEAKKA--DEAKKAEE---AKKADEAKKAEEKKKADELKKAEELK--KAEEKKKAEEAKKAEEDKNMALRKA 1583

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1648 Q--AQALQDRVDSLQRQVADS-EVKAGTLQLTVE-RLNGALAKVEESEGALRDKVRGLTEALAQSSASLNSTRDKNlhlq 1723
Cdd:PTZ00121  1584 EeaKKAEEARIEEVMKLYEEEkKMKAEEAKKAEEaKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN---- 1659

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1724 kALTACEHDRQVLQERLDA--ARQALSEARKQSSSLGEQVQtlrgEVADLELQRVEAEGQLQQLREVLRQRQEGEAAALN 1801
Cdd:PTZ00121  1660 -KIKAAEEAKKAEEDKKKAeeAKKAEEDEKKAAEALKKEAE----EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE 1734

                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1370455403 1802 TVQKLQDERRLLQErlgslqraLAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRSHEDTVRLSAEK 1873
Cdd:PTZ00121  1735 AKKEAEEDKKKAEE--------AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1183-1828 5.00e-08

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 58.39  E-value: 5.00e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1183 EALRRSNEELRSAVKKAES-ERISLKLANEDKEQKLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELRRQMKM 1261
Cdd:COG4913    255 EPIRELAERYAAARERLAElEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG 334

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1262 LDsentrlGRELAELQGRLALGERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEqegefrtrerrLLGSLE 1341
Cdd:COG4913    335 NG------GDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAA-----------LLEALE 397

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1342 EARGTEKQQLDHARGlelkleaaraeaaelglRLSAAEGRAQGLEAELARVEVQRRAAEAQLGGLRSALRRGLGLgrapS 1421
Cdd:COG4913    398 EELEALEEALAEAEA-----------------ALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGL----D 456

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1422 PAPRPVPGS----PARDAPAEGSGEG-LNSpstlecspgsqppspgPATSPASPDLDPEAVRGA-----LREFLQELRSA 1491
Cdd:COG4913    457 EAELPFVGElievRPEEERWRGAIERvLGG----------------FALTLLVPPEHYAAALRWvnrlhLRGRLVYERVR 520

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1492 QRERDELRTQTSAlNRQLAEMEAERDSATSRARQL---QKAVA--ESEEA----RRSV--DG--RLSGVQAELALQEESV 1558
Cdd:COG4913    521 TGLPDPERPRLDP-DSLAGKLDFKPHPFRAWLEAElgrRFDYVcvDSPEElrrhPRAItrAGqvKGNGTRHEKDDRRRIR 599

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1559 RRSERERRATlDQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRS 1638
Cdd:COG4913    600 SRYVLGFDNR-AKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELE 678

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1639 RLGLSDR-----EAQAQALQDRVDSLQRQVADSEVKAGTLQltvERLNGALAKVEESEGALRDKVRGLTEALAQSSASLN 1713
Cdd:COG4913    679 RLDASSDdlaalEEQLEELEAELEELEEELDELKGEIGRLE---KELEQAEEELDELQDRLEAAEDLARLELRALLEERF 755

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1714 STRDKNLHLQKALTACEHDRQVLQERLDAARQALSEARKQ-SSSLGEQVQTLRGEVADLE-----LQRVEAEG---QLQQ 1784
Cdd:COG4913    756 AAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAfNREWPAETADLDADLESLPeylalLDRLEEDGlpeYEER 835

                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....
gi 1370455403 1785 LREVLRQRQEGEAAALNtvQKLQDERRLLQERLGSLQRALAQLE 1828
Cdd:COG4913    836 FKELLNENSIEFVADLL--SKLRRAIREIKERIDPLNDSLKRIP 877
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 688-906 5.46e-08

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 57.08  E-value: 5.46e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  688 KQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQAaq 767
Cdd:COG4942     20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA-- 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  768 eELRRQRDRLEEEQEDAVQDGARVRREL-------ERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKAEV 840
Cdd:COG4942     98 -ELEAQKEELAELLRALYRLGRQPPLALllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370455403  841 AEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGR 906
Cdd:COG4942    177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 749-1428 5.56e-08

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 58.16  E-value: 5.56e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  749 AQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAV--QDGARVRRELERSH--RQLEQLEGKRSVLAKELVEVREALS 824
Cdd:TIGR02169  175 ALEELEEVEENIERLDLIIDEKRQQLERLRREREKAEryQALLKEKREYEGYEllKEKEALERQKEAIERQLASLEEELE 254

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  825 RATLQRDMLQAEKAEVAEALTKAEAGRVEL-ELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSAL 903
Cdd:TIGR02169  255 KLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL 334

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  904 QGRQRQAEQEatvareeqerleelrleqevarqgLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQEAAWRELEAER 983
Cdd:TIGR02169  335 LAEIEELERE------------------------IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY 390

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  984 AQLQSQLQREQEEL-----------------LARLEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLK------ESE 1040
Cdd:TIGR02169  391 REKLEKLKREINELkreldrlqeelqrlseeLADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAadlskyEQE 470

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1041 KTALSEKLMGTRHSLATISLEMER---QKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQEV------------ 1105
Cdd:TIGR02169  471 LYDLKEEYDRVEKELSKLQRELAEaeaQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYAtaievaagnrln 550

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1106 ------------------------------RRLQEQARDLGK-QRDSCLREAEELRTQLRLLEDA-----RDGLRRELLE 1149
Cdd:TIGR02169  551 nvvveddavakeaiellkrrkagratflplNKMRDERRDLSIlSEDGVIGFAVDLVEFDPKYEPAfkyvfGDTLVVEDIE 630

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1150 AQRKL------------------------RESQEGREVQRQEAGE---LRRSLGEGAKEREALRRSNEELRSAVKKAESE 1202
Cdd:TIGR02169  631 AARRLmgkyrmvtlegelfeksgamtggsRAPRGGILFSRSEPAElqrLRERLEGLKRELSSLQSELRRIENRLDELSQE 710

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1203 RISLKLANEDKEQKLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRLGRELAELQGRLA- 1281
Cdd:TIGR02169  711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSh 790

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1282 --------LGERAEKESRRETLGLR------QRLLKGEASLEVMRQELQVAQRKLQEQEGEFRTRERRLLGSLEEARGTE 1347
Cdd:TIGR02169  791 sripeiqaELSKLEEEVSRIEARLReieqklNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1348 KQQLDHARGLELKLEAARAEAAELGLRLSAAEGRAQGLEAELARVEVQRRAAEAQLGGLRSALRRGLGLGRAPSPAPRPV 1427
Cdd:TIGR02169  871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE 950


                   .
gi 1370455403 1428 P 1428
Cdd:TIGR02169  951 L 951
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1481-1958 8.49e-08

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 57.38  E-value: 8.49e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1481 LREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQaELALQEESVRR 1560
Cdd:PRK03918   219 LREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIK 297

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1561 SERERRATLDQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLEL--QRRSLEGELQRS 1638
Cdd:PRK03918   298 LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELyeEAKAKKEELERL 377

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1639 RLGLSDR-----EAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTEA-----LAQS 1708
Cdd:PRK03918   378 KKRLTGLtpeklEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEhrkelLEEY 457

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1709 SASLNSTRDKnlhlQKALTACEHDRQVLQERLDAARQALSEARKQsSSLGEQVQTLRGEVADLELQRVEAEGQ----LQQ 1784
Cdd:PRK03918   458 TAELKRIEKE----LKEIEEKERKLRKELRELEKVLKKESELIKL-KELAEQLKELEEKLKKYNLEELEKKAEeyekLKE 532

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1785 LREVLRQRQEGEAAALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDRValrRTLDKVEREKLRSHE 1864
Cdd:PRK03918   533 KLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERL---KELEPFYNEYLELKD 609

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1865 DTVRLSAEKGRLDR---TLTGAELELAEAQRQIQQLEAQVVVLEQSHSPAQLE------VDAQQQQLELQQEVERLRSAQ 1935
Cdd:PRK03918   610 AEKELEREEKELKKleeELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEelreeyLELSRELAGLRAELEELEKRR 689

                          490       500
                   ....*....|....*....|...
gi 1370455403 1936 AQTERTLEARERAHRQRVRGLEE 1958
Cdd:PRK03918   690 EEIKKTLEKLKEELEEREKAKKE 712
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 736-958 8.76e-08

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 56.70  E-value: 8.76e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  736 SREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKE 815
Cdd:COG4942     19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  816 LVEVREALSR--ATLQRDMLQAEKAEV--AEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNR 891
Cdd:COG4942     99 LEAQKEELAEllRALYRLGRQPPLALLlsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370455403  892 LVAQLEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPT 958
Cdd:COG4942    179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
mukB PRK04863
chromosome partition protein MukB;
657-1021 1.16e-07

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 57.27  E-value: 1.16e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  657 LIHSALHKRQlQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLS 736
Cdd:PRK04863   284 HLEEALELRR-ELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEE 362

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  737 ReksnLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQE-------------DAVQDGARVRRELERSHRQLE 803
Cdd:PRK04863   363 R----LEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQaldvqqtraiqyqQAVQALERAKQLCGLPDLTAD 438

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  804 QLEGKRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQdsLSKLSALNESLA 883
Cdd:PRK04863   439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRR--LREQRHLAEQLQ 516

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  884 QDKLDLNRLVAQLEEEKSAlQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHER 963
Cdd:PRK04863   517 QLRMRLSELEQRLRQQQRA-ERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARI 595

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1370455403  964 SQLQeqlAQEAAWRELEAERAQLQSQLQREQEElLARLEAEKEELSEEIAALQQERDE 1021
Cdd:PRK04863   596 QRLA---ARAPAWLAAQDALARLREQSGEEFED-SQDVTEYMQQLLERERELTVERDE 649
PTZ00121 PTZ00121
MAEBL; Provisional
 1177-1935 1.60e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 57.07  E-value: 1.60e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1177 EGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEARtavgkeagELRTGLQEVERSRLEARRELQELR 1256
Cdd:PTZ00121  1057 EGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAK--------KTETGKAEEARKAEEAKKKAEDAR 1128

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1257 RQMKMLDSENTRLGREL--AELQGRLALGERAEKESRRETLGLRQRLLKGEAS---LEVMR-QELQVAQRKLQEQEGEFR 1330
Cdd:PTZ00121  1129 KAEEARKAEDARKAEEArkAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAArkaEEVRKaEELRKAEDARKAEAARKA 1208

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1331 TRERRLlgslEEARGTEkqqlDHARGLELKleaaraeaaelglrlSAAEGRAQGLEAElaRVEVQRRAAEAqlgglrsal 1410
Cdd:PTZ00121  1209 EEERKA----EEARKAE----DAKKAEAVK---------------KAEEAKKDAEEAK--KAEEERNNEEI--------- 1254

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1411 rRGLGLGRAPSPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPDLDPEAVRGALREFLQELRS 1490
Cdd:PTZ00121  1255 -RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADA 1333

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1491 AQRERDELRTQTSAlnrQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGrlSGVQAELALQEESVRRSERERRATLD 1570
Cdd:PTZ00121  1334 AKKKAEEAKKAAEA---AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA--AKKKAEEKKKADEAKKKAEEDKKKAD 1408

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1571 QVATLERSLQATESELRASQEKiskMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLGLSDREAQaq 1650
Cdd:PTZ00121  1409 ELKKAAAAKKKADEAKKKAEEK---KKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK-- 1483

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1651 alqdRVDSLQRQVADSEVKAGTLQLTVERLNGA--LAKVEESEGAlrDKVRGLTEALAQSSASLNSTRDKNLHLQKA--L 1726
Cdd:PTZ00121  1484 ----KADEAKKKAEEAKKKADEAKKAAEAKKKAdeAKKAEEAKKA--DEAKKAEEAKKADEAKKAEEKKKADELKKAeeL 1557

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1727 TACEHDRQVLQ-----ERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQEGEAAALN 1801
Cdd:PTZ00121  1558 KKAEEKKKAEEakkaeEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQ 1637

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1802 TVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRSHEDTVRLSAEKGRLDRTLT 1881
Cdd:PTZ00121  1638 LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK 1717

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1370455403 1882 GAELELAEAQRQIQQLEAQVVVLEQSHSPAQLEVDAQQQQLELQQEVERLRSAQ 1935
Cdd:PTZ00121  1718 AEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAE 1771
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 1478-1911 3.72e-07

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 55.73  E-value: 3.72e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1478 RGALRE---FLQELRSAQRERDELRTQTSALNRQLA----EMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAE 1550
Cdd:COG3096    235 EAALREnrmTLEAIRVTQSDRDLFKHLITEATNYVAadymRHANERRELSERALELRRELFGARRQLAEEQYRLVEMARE 314

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1551 LALQEESVRRSERERRATLDQVATLERSLQAteselrasQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRS 1630
Cdd:COG3096    315 LEELSARESDLEQDYQAASDHLNLVQTALRQ--------QEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEA 386

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1631 LEGELQRSRLGLSDREAQAQALQDRvdSLQ-RQVADSEVKAGTL----QLTVERLNGALAKVEESEGALRDKVRGLTEAL 1705
Cdd:COG3096    387 AEEEVDSLKSQLADYQQALDVQQTR--AIQyQQAVQALEKARALcglpDLTPENAEDYLAAFRAKEQQATEEVLELEQKL 464

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1706 AQSSASLNStRDKNLHLQKALTAcEHDRqvlQERLDAARQALSEARKQsSSLGEQVQTLRGEVADLElQRVEAEGQLQQL 1785
Cdd:COG3096    465 SVADAARRQ-FEKAYELVCKIAG-EVER---SQAWQTARELLRRYRSQ-QALAQRLQQLRAQLAELE-QRLRQQQNAERL 537

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1786 REVLRQRQEGEAAALNTVQKLQDERRLLQERLGSLQR----ALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLR 1861
Cdd:COG3096    538 LEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAeaveQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQ 617

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1370455403 1862 SHE---DTVRLSAEKGRLDRTLTGAELELAEAQRQIQQLEAQVVVLEQSHSPA 1911
Cdd:COG3096    618 SGEalaDSQEVTAAMQQLLEREREATVERDELAARKQALESQIERLSQPGGAE 670
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
687-1148 3.79e-07

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 55.16  E-value: 3.79e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  687 RKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLS--REKSNLAHSLQVAQQQAEELRQEREKLQ 764
Cdd:COG4717     80 LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEELEERLEELR 159

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  765 AAQEELRRQRDRLEEEQEDAV----QDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKAEV 840
Cdd:COG4717    160 ELEEELEELEAELAELQEELEelleQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  841 AEALTKAEAGRVELELS-MTKLRAEEASLQDSLSKLSALNESLAQdkldlnrlVAQLEEEKSALQGRQRQAEQEATVARE 919
Cdd:COG4717    240 ALEERLKEARLLLLIAAaLLALLGLGGSLLSLILTIAGVLFLVLG--------LLALLFLLLAREKASLGKEAEELQALP 311

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  920 EQERLEELRLEQEVARQGLEGSLRVAEqaqealeqqlptLRHERSQLQEQLAQEAAWRELEAERAqlQSQLQREQEELLA 999
Cdd:COG4717    312 ALEELEEEELEELLAALGLPPDLSPEE------------LLELLDRIEELQELLREAEELEEELQ--LEELEQEIAALLA 377

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1000 RLEAEKEELSEEIAALQQERDEgllLAESEKQQALSLKESEKTALSEKLMGTRHSLATISLEMERQKRDAQSRQEQDRST 1079
Cdd:COG4717    378 EAGVEDEEELRAALEQAEEYQE---LKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREE 454

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1370455403 1080 VNALTSELRDLraqreeaaaAHAQEVRRLQEQARDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELL 1148
Cdd:COG4717    455 LAELEAELEQL---------EEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 1475-1966 4.25e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 55.46  E-value: 4.25e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1475 EAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQ 1554
Cdd:TIGR02169  304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1555 EESVRRSERERRATLDQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGE 1634
Cdd:TIGR02169  384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1635 LQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTV-----------ERLNGAL--------------AKVEE 1689
Cdd:TIGR02169  464 LSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVrggraveevlkASIQGVHgtvaqlgsvgeryaTAIEV 543

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1690 SEGALRDKVRGLTEALAQSSAS--------------LNSTRDKNLHLQK---------ALTACEHDRQ------------ 1734
Cdd:TIGR02169  544 AAGNRLNNVVVEDDAVAKEAIEllkrrkagratflpLNKMRDERRDLSIlsedgvigfAVDLVEFDPKyepafkyvfgdt 623

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1735 VLQERLDAARQALSEARkqssslgeqVQTLRGEVadLELQRVEAEGQLQQLREVLRQRQE-GEAAALNT-VQKLQDERRL 1812
Cdd:TIGR02169  624 LVVEDIEAARRLMGKYR---------MVTLEGEL--FEKSGAMTGGSRAPRGGILFSRSEpAELQRLRErLEGLKRELSS 692

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1813 LQERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRSHEDTVRLSAEKGRLDRTLTGAELELAEAQR 1892
Cdd:TIGR02169  693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE 772

                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370455403 1893 QIQQLEAQVVVLEQSHSPA---QLEVDAQQQQLELQQEVERLRSAQAQTERTLEARERAhRQRVRGLEEQVSTLKGQ 1966
Cdd:TIGR02169  773 DLHKLEEALNDLEARLSHSripEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL-EKEIQELQEQRIDLKEQ 848
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
719-1259 5.14e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 54.92  E-value: 5.14e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  719 EDAQREVQRLRSANELLSREKSNLAHsLQVAQQQAEELRQEREKLQAAQEELRRQRD-RLEEEQEDAVQDGARVRRELER 797
Cdd:COG4913    228 DALVEHFDDLERAHEALEDAREQIEL-LEPIRELAERYAAARERLAELEYLRAALRLwFAQRRLELLEAELEELRAELAR 306

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  798 SHRQLEQLEGKRSVLAKELVEVREALSRATLQR-DMLQAEKAEVAEALTKAEAGRVELElsmTKLRAEEASLQDSLSKLS 876
Cdd:COG4913    307 LEAELERLEARLDALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLE---ALLAALGLPLPASAEEFA 383

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  877 ALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQERLEELR----LEQEVARQGLEGSLRVAEQA---- 948
Cdd:COG4913    384 ALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsnipARLLALRDALAEALGLDEAElpfv 463

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  949 -------------QEALEQQLPTLRheRSQL--QEQLAQEAAWRELEAERAQLQSQLQREQEELLARLEAEKEELSEEI- 1012
Cdd:COG4913    464 gelievrpeeerwRGAIERVLGGFA--LTLLvpPEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLd 541

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1013 -------AALQQE--RDEGLLLAESEKQqalsLKESEKTALSEKLMGTRHSLATISLEMERQKR-----DAQSRQEQDRS 1078
Cdd:COG4913    542 fkphpfrAWLEAElgRRFDYVCVDSPEE----LRRHPRAITRAGQVKGNGTRHEKDDRRRIRSRyvlgfDNRAKLAALEA 617

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1079 TVNALTSELRDLRAQREEAAAAHAQEVRRLQEQARDLGKQRD-----SCLREAEELRTQLRLLEDARDGLRrellEAQRK 1153
Cdd:COG4913    618 ELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDeidvaSAEREIAELEAELERLDASSDDLA----ALEEQ 693

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1154 LRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEARTAVGKEAGE 1233
Cdd:COG4913    694 LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEE 773

                          570       580
                   ....*....|....*....|....*.
gi 1370455403 1234 LRTGLQEversrlEARRELQELRRQM 1259
Cdd:COG4913    774 RIDALRA------RLNRAEEELERAM 793
PTZ00121 PTZ00121
MAEBL; Provisional
 687-1159 5.43e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 55.15  E-value: 5.43e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  687 RKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANEllSREKSNLAHSLQVAQQQAEELRQEREKLQAA 766
Cdd:PTZ00121  1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE--DKKKADELKKAAAAKKKADEAKKKAEEKKKA 1433

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  767 QEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLE--GKRSVLAKELVEVREALSRATLQRDMLQ--AEKAEVAE 842
Cdd:PTZ00121  1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADeaKKKAEEAKKADEAKKKAEEAKKKADEAKkaAEAKKKAD 1513

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  843 ALTKAEAGRVELELSmtklRAEEASLQDSLSKLSalnESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQE 922
Cdd:PTZ00121  1514 EAKKAEEAKKADEAK----KAEEAKKADEAKKAE---EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA 1586

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  923 RLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTlrHERSQLQEQLAQEAAWRELEAERAQLQSQLQREQEELLARLE 1002
Cdd:PTZ00121  1587 KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA--EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA 1664

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1003 AEKEELSEEIAALQQERDEglllAESEKQQALSLKESEKTAlseklmgtRHSLATISLEMERQKRDAQSRQEQDRSTVNA 1082
Cdd:PTZ00121  1665 EEAKKAEEDKKKAEEAKKA----EEDEKKAAEALKKEAEEA--------KKAEELKKKEAEEKKKAEELKKAEEENKIKA 1732

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370455403 1083 ltselrdlraqreEAAAAHAQEVRRLQEQAR-DLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQE 1159
Cdd:PTZ00121  1733 -------------EEAKKEAEEDKKKAEEAKkDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD 1797
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1105-1667 5.88e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 54.92  E-value: 5.88e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1105 VRRLQEQARDLGKQRDSClREAEELRTQLRLLEDARDGLRreLLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREA 1184
Cdd:COG4913    244 LEDAREQIELLEPIRELA-ERYAAARERLAELEYLRAALR--LWFAQRRLELLEAELEELRAELARLEAELERLEARLDA 320

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1185 LRRSNEELRSAVKKAESERI-SLKLANEDKEQKLALLEEARTAVGKEAGELR----TGLQEVERSRLEARRELQELRRQM 1259
Cdd:COG4913    321 LREELDELEAQIRGNGGDRLeQLEREIERLERELEERERRRARLEALLAALGlplpASAEEFAALRAEAAALLEALEEEL 400

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1260 KMLDSENTRLGRELAELQGRLA--LGERAEKESRRETLGLRQRLLKGE--ASLEVMRQELQVAQRKLQEQEGE------- 1328
Cdd:COG4913    401 EALEEALAEAEAALRDLRRELRelEAEIASLERRKSNIPARLLALRDAlaEALGLDEAELPFVGELIEVRPEEerwrgai 480

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1329 ------FRTR-------ERRLLGSLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRLSAAEGRAQG-LEAELA-RVE 1393
Cdd:COG4913    481 ervlggFALTllvppehYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAwLEAELGrRFD 560

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1394 VQRRAAEAQLGGLRSAL-RRGLG--------LGRAPSPAPRPVPGSPARDApaegsgeglnspstlecspgsqppspgpa 1464
Cdd:COG4913    561 YVCVDSPEELRRHPRAItRAGQVkgngtrheKDDRRRIRSRYVLGFDNRAK----------------------------- 611

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1465 tspaspdldpeavrgaLREFLQELRSAQRERDELRTQTSALNRQLAEMEAERdsatsRARQLQKAVAESEEARRSVDGRL 1544
Cdd:COG4913    612 ----------------LAALEAELAELEEELAEAEERLEALEAELDALQERR-----EALQRLAEYSWDEIDVASAEREI 670

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1545 SGVQAELAlqeesvrrserERRATLDQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESR---T 1621
Cdd:COG4913    671 AELEAELE-----------RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRleaA 739

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*..
gi 1370455403 1622 VKLELQRRSLEGELQRSRLGLSDREAQ-AQALQDRVDSLQRQVADSE 1667
Cdd:COG4913    740 EDLARLELRALLEERFAAALGDAVERElRENLEERIDALRARLNRAE 786
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 950-1269 7.92e-07

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 54.36  E-value: 7.92e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  950 EALEQQLPTLRHERSQLQEQlaQEAAWRELEAERaqlqsqLQREQEELLARLEAEKEELSEEIAALQQERDEGLLLAESE 1029
Cdd:pfam17380  269 EFLNQLLHIVQHQKAVSERQ--QQEKFEKMEQER------LRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQE 340

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1030 K------------QQALSLKESEKTALSEKLMGTRHSLATISLEMERQKRDAQSRQEQDRSTVNALTSELRDlraqreea 1097
Cdd:pfam17380  341 RmamerereleriRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQ-------- 412

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1098 aaahaqevRRLQEQARDLGKQRdsclREAEELRT-QLRLLEDARDglrRELLEAQRKLRESQEGREVQRQEAGELRRSLG 1176
Cdd:pfam17380  413 --------RKIQQQKVEMEQIR----AEQEEARQrEVRRLEEERA---REMERVRLEEQERQQQVERLRQQEEERKRKKL 477

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1177 EGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLAL-LEEARTAVGKEAGELRTGLQEVERSRLEARRELQEl 1255
Cdd:pfam17380  478 ELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKeMEERQKAIYEEERRREAEEERRKQQEMEERRRIQE- 556

                          330
                   ....*....|....
gi 1370455403 1256 rrQMKMLDSENTRL 1269
Cdd:pfam17380  557 --QMRKATEERSRL 568
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1736-1971 8.30e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 54.29  E-value: 8.30e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1736 LQERLDAARQALSEARKQSssLGEQVQTLRGEVADLELQRVEAEGQLQQLrevlrqrqEGEAAALNT-VQKLQDERRLLQ 1814
Cdd:TIGR02168  218 LKAELRELELALLVLRLEE--LREELEELQEELKEAEEELEELTAELQEL--------EEKLEELRLeVSELEEEIEELQ 287

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1815 ERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRSHEDTVRLSAEKGRLDRTLTGAELELAEAQRQI 1894
Cdd:TIGR02168  288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1895 QQLE-----AQVVVLEQSHSPAQLEVDAQQQQLELQQEVERLRSAQAQTERTLEARERAHRQRVRGLEEQVSTLKGQLQQ 1969
Cdd:TIGR02168  368 EELEsrleeLEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447


                   ..
gi 1370455403 1970 EL 1971
Cdd:TIGR02168  448 EL 449
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 654-1225 1.06e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 53.92  E-value: 1.06e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  654 TLALIHSALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANE 733
Cdd:TIGR02169  323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN 402

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  734 LLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLA 813
Cdd:TIGR02169  403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE 482

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  814 KELVEVREALSRATLQRDMLQAE----------------------------KAEVAEALTKAEAGRVELELSMTKLRAEE 865
Cdd:TIGR02169  483 KELSKLQRELAEAEAQARASEERvrggraveevlkasiqgvhgtvaqlgsvGERYATAIEVAAGNRLNNVVVEDDAVAKE 562

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  866 A------------------SLQDSLSKLSALNES----------------------------------LAQDKLDLNRLV 893
Cdd:TIGR02169  563 AiellkrrkagratflplnKMRDERRDLSILSEDgvigfavdlvefdpkyepafkyvfgdtlvvedieAARRLMGKYRMV 642

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  894 AQLEE--EKS--------ALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGL---EGSLRVAEQAQEALEQQLPTLR 960
Cdd:TIGR02169  643 TLEGElfEKSgamtggsrAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELrriENRLDELSQELSDASRKIGEIE 722

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  961 HERSQLQEQLAQEAawRELEAERAQLQSqLQREQEELLARLEAEKEELSEEIAALQQERDEgllLAESEKQQALSlKESE 1040
Cdd:TIGR02169  723 KEIEQLEQEEEKLK--ERLEELEEDLSS-LEQEIENVKSELKELEARIEELEEDLHKLEEA---LNDLEARLSHS-RIPE 795

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1041 KTALSEKLMGTRHSLATISLEMERQKRDAQSRQEQDRSTVNALTSELRDLRAQREEaaaahaqevrrLQEQARDLGKQRD 1120
Cdd:TIGR02169  796 IQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS-----------IEKEIENLNGKKE 864

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1121 SCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAE 1200
Cdd:TIGR02169  865 ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944

                          650       660
                   ....*....|....*....|....*
gi 1370455403 1201 SERISLKLANEDKEQKLALLEEART 1225
Cdd:TIGR02169  945 EIPEEELSLEDVQAELQRVEEEIRA 969
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 208-1028 1.08e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 53.92  E-value: 1.08e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  208 ASLLSLQEENQLLQQELSRVEDLLAQSRAERDELAIKYNAVSERLEQALRLEPGELETQ--EPRGLVRQSVELRRQLQEE 285
Cdd:TIGR02169  244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEiaSLERSIAEKERELEDAEER 323

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  286 QA-------SYRRKLQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLLERSGEL---------EQQRLRDTEHS-QD 348
Cdd:TIGR02169  324 LAkleaeidKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFaetrdelkdYREKLEKLKREiNE 403

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  349 LESALIRLEEE-QQRSASLAQVNAML---REQLDQAGSANQALSEDIRKVTNDWTRCRKELEHREAAWRREEESFNAYFS 424
Cdd:TIGR02169  404 LKRELDRLQEElQRLSEELADLNAAIagiEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  425 NEHSRLLLL---------WRQVVGFRRLVSEVKMFTERDLLQLGGELARTSRAVQEAgLGLSTGLRLaesrAEAALEKQA 495
Cdd:TIGR02169  484 ELSKLQRELaeaeaqaraSEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATA-IEVAAGNRL----NNVVVEDDA 558

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  496 LLQAQLEEQLRDKVLREKDLAQQQMQSDLDKADLSARVTELGLAVkrlekqnlekdqvnkDLTEKLEALESLrlqeqaal 575
Cdd:TIGR02169  559 VAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAV---------------DLVEFDPKYEPA-------- 615

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  576 etedgegLQQTLRDlaQAVLSDSESGVQLSGSERTAdASNGSLRGLSGQRTpspprrsspGRGRSPRRGPSPACSDSStl 655
Cdd:TIGR02169  616 -------FKYVFGD--TLVVEDIEAARRLMGKYRMV-TLEGELFEKSGAMT---------GGSRAPRGGILFSRSEPA-- 674

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  656 alihsalhkrqlQVQDMRGRyeasqdlLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELL 735
Cdd:TIGR02169  675 ------------ELQRLRER-------LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL 735

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  736 SREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGArvRRELERSHRQLEQLEGKRSVLAKE 815
Cdd:TIGR02169  736 KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQAELSKLEEEVSRIEAR 813

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  816 LVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQ 895
Cdd:TIGR02169  814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE 893

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  896 LEEEKSALQGRQRQAEQEatvareeqerleelrleqevaRQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQEAA 975
Cdd:TIGR02169  894 LEAQLRELERKIEELEAQ---------------------IEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS 952

                          810       820       830       840       850       860
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370455403  976 WRELEAERAQLQSQLQR----------EQEELLARLEAEKEELseeiAALQQERDEGLLLAES 1028
Cdd:TIGR02169  953 LEDVQAELQRVEEEIRAlepvnmlaiqEYEEVLKRLDELKEKR----AKLEEERKAILERIEE 1011
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
668-997 1.20e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 53.89  E-value: 1.20e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  668 QVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSLQ 747
Cdd:PRK02224   280 EVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAE 359

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  748 VAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAvqdgarvRRELERSHRQLEQLEGKRSVLAKELVEVREALS--R 825
Cdd:PRK02224   360 ELREEAAELESELEEAREAVEDRREEIEELEEEIEEL-------RERFGDAPVDLGNAEDFLEELREERDELREREAelE 432

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  826 ATLQ---------RDMLQA----------EKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQdk 886
Cdd:PRK02224   433 ATLRtarerveeaEALLEAgkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDR-- 510

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  887 ldlnrlVAQLEEEKSALQgrQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALE--QQLPTLRHERS 964
Cdd:PRK02224   511 ------IERLEERREDLE--ELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEarEEVAELNSKLA 582

                          330       340       350
                   ....*....|....*....|....*....|...
gi 1370455403  965 QLQEQLAQEAAWRELEAERAQLQSQLQREQEEL 997
Cdd:PRK02224   583 ELKERIESLERIRTLLAAIADAEDEIERLREKR 615
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 683-1535 1.35e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 53.92  E-value: 1.35e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  683 LGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQ----AHEDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQ 758
Cdd:TIGR02169  179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERyqalLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTE 258

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  759 EREKLQAAQEELRRQRDRLEEEQEDAVQD-GARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEK 837
Cdd:TIGR02169  259 EISELEKRLEEIEQLLEELNKKIKDLGEEeQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  838 AEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQEATVA 917
Cdd:TIGR02169  339 EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRL 418

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  918 REEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQL-AQEAAWRELEAEraqlQSQLQREQEE 996
Cdd:TIGR02169  419 SEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELyDLKEEYDRVEKE----LSKLQRELAE 494

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  997 LLARLEAEKEELSEEIAAlQQERDEGLLLAESEKQQALSLKESEKTALsEKLMGTRHSLATISLEMERQKRDAQSRQEQ- 1075
Cdd:TIGR02169  495 AEAQARASEERVRGGRAV-EEVLKASIQGVHGTVAQLGSVGERYATAI-EVAAGNRLNNVVVEDDAVAKEAIELLKRRKa 572

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1076 DRST---VNALTSELRDLRAQREEAAAAHAQEVRRLQEQARDLGKQ--RDSCLreAEELRTQLRLLEDAR-DGLRRELLE 1149
Cdd:TIGR02169  573 GRATflpLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYvfGDTLV--VEDIEAARRLMGKYRmVTLEGELFE 650

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1150 -------AQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEE 1222
Cdd:TIGR02169  651 ksgamtgGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1223 ARTAVGKEAGELRTGLQEVERSRLEARRELQELrrqmkmlDSENTRLGRELAELQGRLALGERAEKESRRETLglrqrll 1302
Cdd:TIGR02169  731 EEEKLKERLEELEEDLSSLEQEIENVKSELKEL-------EARIEELEEDLHKLEEALNDLEARLSHSRIPEI------- 796

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1303 kgeaslevmRQELQVAQRKLQEQEGEFRTRERRLlgsleEARGTEKQQLDHAR-GLELKLEAARAEAAELGLRLSAAEGR 1381
Cdd:TIGR02169  797 ---------QAELSKLEEEVSRIEARLREIEQKL-----NRLTLEKEYLEKEIqELQEQRIDLKEQIKSIEKEIENLNGK 862

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1382 AQGLEAELARVEVQRRAAEAQLGGLrsalrrglglgrapspaprpvpgspardapaegsgeglnspstlecspgsqppsp 1461
Cdd:TIGR02169  863 KEELEEELEELEAALRDLESRLGDL------------------------------------------------------- 887

                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1370455403 1462 gpatspaspdldpeavrgalreflqelrsaQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEE 1535
Cdd:TIGR02169  888 ------------------------------KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1701-1907 1.57e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 52.46  E-value: 1.57e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1701 LTEALAQSSASLNSTRDKNLHLQKALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEG 1780
Cdd:COG4942     11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1781 QLQQLREVLRQRQEGEAAALNTVQKLQDERRLL----QERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVE 1856
Cdd:COG4942     91 EIAELRAELEAQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1370455403 1857 REKLRSHEDTVRLSAEKGRLDRTLTGAELELAEAQRQIQQLEAQVVVLEQS 1907
Cdd:COG4942    171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
PRK10246 PRK10246
exonuclease subunit SbcC; Provisional
 693-988 1.58e-06

exonuclease subunit SbcC; Provisional


Pssm-ID: 182330 [Multi-domain]  Cd Length: 1047  Bit Score: 53.65  E-value: 1.58e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  693 SESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELlSREKSNLAHSLQVAQQQAEELRQEREKLQAAQ--EEL 770
Cdd:PRK10246   214 TPEQVQSLTASLQVLTDEEKQLLTAQQQQQQSLNWLTRLDEL-QQEASRRQQALQQALAAEEKAQPQLAALSLAQpaRQL 292

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  771 RRQRDRLEEeQEDAVqdgARVRRELERSHRQLEQLEGKRSvlakelvEVREALSRatlQRDMLQAEKAEVAEALTKAEAG 850
Cdd:PRK10246   293 RPHWERIQE-QSAAL---AHTRQQIEEVNTRLQSTMALRA-------RIRHHAAK---QSAELQAQQQSLNTWLAEHDRF 358

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  851 RVeLELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLN-------RLVAQLEEEKSALQGRQRQAEQEATVAREEQER 923
Cdd:PRK10246   359 RQ-WNNELAGWRAQFSQQTSDREQLRQWQQQLTHAEQKLNalpaitlTLTADEVAAALAQHAEQRPLRQRLVALHGQIVP 437

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1370455403  924 LEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQEAAWRELEAERAQLQS 988
Cdd:PRK10246   438 QQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKDLEAQRAQLQA 502
mukB PRK04863
chromosome partition protein MukB;
1477-1906 1.84e-06

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 53.42  E-value: 1.84e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1477 VRGALREF---LQELRSAQRERDELR----TQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQA 1549
Cdd:PRK04863   235 MEAALRENrmtLEAIRVTQSDRDLFKhlitESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMAR 314

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1550 ELAlqeesvrrsererratldqvaTLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASEsrtvKLELQRR 1629
Cdd:PRK04863   315 ELA---------------------ELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEE----RLEEQNE 369

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1630 SLEGelqrSRLGLSDREAQAQALQDRVDSLQRQVAD-------SEVKAGTLQLTVERLNGA----------LAKVEESEG 1692
Cdd:PRK04863   370 VVEE----ADEQQEENEARAEAAEEEVDELKSQLADyqqaldvQQTRAIQYQQAVQALERAkqlcglpdltADNAEDWLE 445

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1693 ALRDKVRGLTEALAQSSASLNSTRDKNLHLQKALT-----ACEHDRQVLQerlDAARQALSEARKQsSSLGEQVQTLRGE 1767
Cdd:PRK04863   446 EFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQlvrkiAGEVSRSEAW---DVARELLRRLREQ-RHLAEQLQQLRMR 521

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1768 VADLElQRVEAEGQLQQLREVLRQRQEGEAAALNTVQKLQDERRLLQERLGSLQRALAQ----LEAEKREVERSALRLEK 1843
Cdd:PRK04863   522 LSELE-QRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARErrmaLRQQLEQLQARIQRLAA 600

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370455403 1844 DRVALRRTLDKVERekLRSH-----EDTVRLSAEKGRLDRTLTGAELELAEAQRQIQQLEAQVVVLEQ 1906
Cdd:PRK04863   601 RAPAWLAAQDALAR--LREQsgeefEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQ 666
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 1487-1909 1.91e-06

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 53.20  E-value: 1.91e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1487 ELRSAQRERDELRTQTSALNRQLAEMEAE---RDSATSRARQLQKAVAESEEA--------RRSVDGR----------LS 1545
Cdd:pfam15921  357 ELTEARTERDQFSQESGNLDDQLQKLLADlhkREKELSLEKEQNKRLWDRDTGnsitidhlRRELDDRnmevqrlealLK 436

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1546 GVQAELALQEESVRRSERERRATLDQVATLERSLQATESELRASQEKISKMK----ANETKLEGDKRRLKEVLDASESRT 1621
Cdd:pfam15921  437 AMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKmtleSSERTVSDLTASLQEKERAIEATN 516

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1622 VKLELQRRSLEGELQRSRlGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGL 1701
Cdd:pfam15921  517 AEITKLRSRVDLKLQELQ-HLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQL 595

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1702 TEALAQSSASLNS---TRDKNLHLQKALTACEHDRQVLQ--------ERLDAAR-------QALSE---ARKQSSSLGEQ 1760
Cdd:pfam15921  596 EKEINDRRLELQEfkiLKDKKDAKIRELEARVSDLELEKvklvnagsERLRAVKdikqerdQLLNEvktSRNELNSLSED 675

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1761 VQTLRGEVAD-----------LELQRVEAEGQLQQLREVLRQRQEGEAAALNTVQKLQDE---RR----LLQERLGSLQR 1822
Cdd:pfam15921  676 YEVLKRNFRNkseemetttnkLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQitaKRgqidALQSKIQFLEE 755

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1823 ALAQLEAEKR--EVERSALRLEKDRVALRRTLDKVEREKLRSHEDtvRLSAEKGRLDRTLTGAELELAEAQRQIQQLEAQ 1900
Cdd:pfam15921  756 AMTNANKEKHflKEEKNKLSQELSTVATEKNKMAGELEVLRSQER--RLKEKVANMEVALDKASLQFAECQDIIQRQEQE 833


                   ....*....
gi 1370455403 1901 VVVLEQSHS 1909
Cdd:pfam15921  834 SVRLKLQHT 842
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
760-1253 1.93e-06

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 52.85  E-value: 1.93e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  760 REKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKAe 839
Cdd:COG4717     48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ- 126

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  840 vaealtkaeagrvelelsmtklraeeasLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQEATVARE 919
Cdd:COG4717    127 ----------------------------LLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEE 178

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  920 EQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQEAAWRELEAERAQLQsqlQREQEELLA 999
Cdd:COG4717    179 LEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLK---EARLLLLIA 255

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1000 RLEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKTALSEKLMGTRHSLATISLEMERQKRDAQSRQEQDRST 1079
Cdd:COG4717    256 AALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLS 335

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1080 VNALTSELRDLRAQREEAAAAHAQEVRRLQEQARDLGKQ--RDSCLREAEELRTQLRLLEDARDgLRRELLEAQRKLRES 1157
Cdd:COG4717    336 PEELLELLDRIEELQELLREAEELEEELQLEELEQEIAAllAEAGVEDEEELRAALEQAEEYQE-LKEELEELEEQLEEL 414

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1158 QEGREVQ---------RQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERislklANEDKEQKLALLEEARTAVG 1228
Cdd:COG4717    415 LGELEELlealdeeelEEELEELEEELEELEEELEELREELAELEAELEQLEEDG-----ELAELLQELEELKAELRELA 489

                          490       500
                   ....*....|....*....|....*
gi 1370455403 1229 KEAGELRTGLQEVERSRLEARRELQ 1253
Cdd:COG4717    490 EEWAALKLALELLEEAREEYREERL 514
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 1475-1959 2.11e-06

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 53.30  E-value: 2.11e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1475 EAVRGALREFLQELRSAQRE----RDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSvdgRLSGVQAE 1550
Cdd:pfam12128  279 EERQETSAELNQLLRTLDDQwkekRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQE---QLPSWQSE 355

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1551 LALQEESVRRSERERRatlDQVATLERSLQATESELRASQEKISKMKANETklEGDKRRLKEVLDASESRTVKLELQRRS 1630
Cdd:pfam12128  356 LENLEERLKALTGKHQ---DVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIR--EARDRQLAVAEDDLQALESELREQLEA 430

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1631 LEGELQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKagtlqltVERLNGALAKVEESEGALRDKVRGLTEALAQSSA 1710
Cdd:pfam12128  431 GKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENF-------DERIERAREEQEAANAEVERLQSELRQARKRRDQ 503

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1711 SLNSTRDKNLHLQKALTACEHdrqvLQERLDAARQAL-----SEARKQSSSLGEQVQT-------LRGEVAD-------- 1770
Cdd:pfam12128  504 ASEALRQASRRLEERQSALDE----LELQLFPQAGTLlhflrKEAPDWEQSIGKVISPellhrtdLDPEVWDgsvggeln 579

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1771 -----LELQRVEAEGQLQQLREVLRQRQEGEAAalntvqkLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDR 1845
Cdd:pfam12128  580 lygvkLDLKRIDVPEWAASEEELRERLDKAEEA-------LQSAREKQAAAEEQLVQANGELEKASREETFARTALKNAR 652

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1846 VALRRTLDKVEREKLRSHEDTVRlsaekgrldrtltgaelELAEAQRQIQQLEAQVVVLEQSHSPAQLEVD-----AQQQ 1920
Cdd:pfam12128  653 LDLRRLFDEKQSEKDKKNKALAE-----------------RKDSANERLNSLEAQLKQLDKKHQAWLEEQKeqkreARTE 715

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|
gi 1370455403 1921 QLELQQEVERLRSAQ-AQTERTLEARERAHRQRVRGLEEQ 1959
Cdd:pfam12128  716 KQAYWQVVEGALDAQlALLKAAIAARRSGAKAELKALETW 755
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
210-392 2.16e-06

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 52.71  E-value: 2.16e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  210 LLSLQEENQLLQQELSRVEDLLAQSRAERDELAIKYNAVSERLEQALRLEPGELETQEPRGLVRQSVELRRQLQEEQASY 289
Cdd:COG3206    207 LVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARY 286

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  290 RRKLQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLLERSGELEQQRLRDTEHSQDLESALIRLEEEQQRSASLAQV 369
Cdd:COG3206    287 TPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVAREL 366

                          170       180
                   ....*....|....*....|...
gi 1370455403  370 NAMLREQLDQAGSANQALSEDIR 392
Cdd:COG3206    367 YESLLQRLEEARLAEALTVGNVR 389
PTZ00121 PTZ00121
MAEBL; Provisional
 895-1631 2.51e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 52.84  E-value: 2.51e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  895 QLEEEKSALQGRQRQAEQEATvarEEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQlptlrhERSQLQEQLAQEA 974
Cdd:PTZ00121  1110 KAEEARKAEEAKKKAEDARKA---EEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAE------EARKAEDAKKAEA 1180

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  975 AWRELEAERAQLQSQLQREQEELLARLEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKTALSEKLMGTRHS 1054
Cdd:PTZ00121  1181 ARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEA 1260

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1055 LATislemERQKRDAQSRQEQDRStvnalTSELRDLRAQREEAAAAHAQEVRRLQE---------QARDLGKQRDSCLRE 1125
Cdd:PTZ00121  1261 RMA-----HFARRQAAIKAEEARK-----ADELKKAEEKKKADEAKKAEEKKKADEakkkaeeakKADEAKKKAEEAKKK 1330

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1126 AEELRTQLRLLEDARDGLRRELLEAQRKLRESQEgrevqRQEAGELRRSlgEGAKEREALRRSNEElrsaVKKAESERis 1205
Cdd:PTZ00121  1331 ADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE-----KAEAAEKKKE--EAKKKADAAKKKAEE----KKKADEAK-- 1397

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1206 lKLANEDKEQKLALLEEArtAVGKEAGELRTGLQEVERSRlEARRELQELRRQmkmldsentrlgrelAELQGRLALGER 1285
Cdd:PTZ00121  1398 -KKAEEDKKKADELKKAA--AAKKKADEAKKKAEEKKKAD-EAKKKAEEAKKA---------------DEAKKKAEEAKK 1458

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1286 AEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEQEGEFRTRERRLLGSLEEARGTEKQQLDHARGLELKLEAAR 1365
Cdd:PTZ00121  1459 AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE 1538

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1366 aeaaelgLRLSAAEGRAQGLEA--ELARVEVQRRAAEAQlgglRSALRRGLGLGRApspaprpvpgSPARDAPAEGSGEG 1443
Cdd:PTZ00121  1539 -------AKKAEEKKKADELKKaeELKKAEEKKKAEEAK----KAEEDKNMALRKA----------EEAKKAEEARIEEV 1597

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1444 LNSPSTLECSPGSQPPSPGPATSPASPDLDPEAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRA 1523
Cdd:PTZ00121  1598 MKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA 1677

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1524 RQLQKavaESEEARRSVDGRLSGVQAELALQEESVRRSERERRATLDQVATLERSLQATESELRASQEkisKMKANETKL 1603
Cdd:PTZ00121  1678 EEAKK---AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED---KKKAEEAKK 1751

                          730       740
                   ....*....|....*....|....*....
gi 1370455403 1604 -EGDKRRLKEVLDASESRTVKLELQRRSL 1631
Cdd:PTZ00121  1752 dEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1486-1714 2.77e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 51.69  E-value: 2.77e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1486 QELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQEESVRRSERER 1565
Cdd:COG4942     20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1566 RATLDQVATLERSLQATES----ELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLG 1641
Cdd:COG4942    100 EAQKEELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370455403 1642 LSDREAQAQALQDRVDSLQRQVADsevkagtLQLTVERLNGALAKVEESEGALRDKVRGLTEALAQSSASLNS 1714
Cdd:COG4942    180 LAELEEERAALEALKAERQKLLAR-------LEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 808-1050 2.99e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 51.69  E-value: 2.99e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  808 KRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAgrvelelsmtKLRAEEASLQDSLSKLSALNESLAQDKL 887
Cdd:COG4942     21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALER----------RIAALARRIRALEQELAALEAELAELEK 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  888 DLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQ 967
Cdd:COG4942     91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  968 EQLAQ-EAAWRELEAERAQLQsQLQREQEELLARLEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKTALSE 1046
Cdd:COG4942    171 AERAElEALLAELEEERAALE-ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFA 249


                   ....
gi 1370455403 1047 KLMG 1050
Cdd:COG4942    250 ALKG 253
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 662-972 3.20e-06

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 52.33  E-value: 3.20e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  662 LHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSN 741
Cdd:TIGR04523  365 LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKD 444

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  742 LAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQdgarvrrELERSHRQLEQLEGKRSVLAKELVEVRE 821
Cdd:TIGR04523  445 LTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQK-------ELKSKEKELKKLNEEKKELEEKVKDLTK 517

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  822 ALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTK--LRAEEASLQDSLSKLSALNESL--AQDKLDLnrLVAQLE 897
Cdd:TIGR04523  518 KISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKenLEKEIDEKNKEIEELKQTQKSLkkKQEEKQE--LIDQKE 595

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1370455403  898 EEKSALqgRQRQAEQEATVAReeqerleelrleqevarqgLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQ 972
Cdd:TIGR04523  596 KEKKDL--IKEIEEKEKKISS-------------------LEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQ 649
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
1484-1961 3.59e-06

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 52.08  E-value: 3.59e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1484 FLQELRSAQRERDELRTQtsalNRQLAEMEAERDSATSRARQLQKAVAESEEARRsvdgrlsgvQAELALQEESVRRSER 1563
Cdd:COG4717     69 NLKELKELEEELKEAEEK----EEEYAELQEELEELEEELEELEAELEELREELE---------KLEKLLQLLPLYQELE 135

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1564 ERRATLDQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVK-LELQRRSLEGELQRSRLGL 1642
Cdd:COG4717    136 ALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQdLAEELEELQQRLAELEEEL 215

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1643 SDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTEALAQSSASLnstrdknlhL 1722
Cdd:COG4717    216 EEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGL---------L 286

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1723 QKALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQEGEaaalnt 1802
Cdd:COG4717    287 ALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELE------ 360

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1803 vqklqdERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVER---------EKLRSHEDTVRLSAEK 1873
Cdd:COG4717    361 ------EELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEqleellgelEELLEALDEEELEEEL 434

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1874 GRLDRTLTGAELELAEAQRQIQQLEAQVVVLEQSHSPAQLEVDAQQQQLELQQEVERLRSAQAQTERTLEARERAHRQRV 1953
Cdd:COG4717    435 EELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514


                   ....*...
gi 1370455403 1954 RGLEEQVS 1961
Cdd:COG4717    515 PPVLERAS 522
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
668-991 4.46e-06

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 51.06  E-value: 4.46e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  668 QVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREksnlahsLQ 747
Cdd:COG4372     32 QLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEE-------LE 104

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  748 VAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRAT 827
Cdd:COG4372    105 SLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQA 184

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  828 LQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQ 907
Cdd:COG4372    185 LDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELE 264

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  908 RQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQEAAWRELEAERAQLQ 987
Cdd:COG4372    265 LAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQ 344


                   ....
gi 1370455403  988 SQLQ 991
Cdd:COG4372    345 LLLV 348
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1578-1799 4.92e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 50.92  E-value: 4.92e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1578 SLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLGLSDREAQAQALQDRVD 1657
Cdd:COG4942     21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1658 SLQRQVADSEVKAGTLQLTVERLngALAKVEESEGALR--DKVRGLTEALAQSSASLNSTRDKNLHLQKALTACEHDRQV 1735
Cdd:COG4942    101 AQKEELAELLRALYRLGRQPPLA--LLLSPEDFLDAVRrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1370455403 1736 LQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQEGEAAA 1799
Cdd:COG4942    179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1471-1912 5.07e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 51.58  E-value: 5.07e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1471 DLDPEAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVA----ESEEARRSVDGRlSG 1546
Cdd:PRK02224   306 DADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAelesELEEAREAVEDR-RE 384

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1547 VQAELALQEESVRRSERERRATLDQVATLERSLQATESELRasqEKISKMKANETKLEGDKRRLKEVLDASESRTVKLEL 1626
Cdd:PRK02224   385 EIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELR---EREAELEATLRTARERVEEAEALLEAGKCPECGQPV 461

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1627 QRRSLEGELQRSRlglsdreaqaqalqDRVDSLQRQVADSEVKAGTLQLTVERLNgALAKVEESEGALRDKVRGLTEALA 1706
Cdd:PRK02224   462 EGSPHVETIEEDR--------------ERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEERREDLEELIA 526

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1707 QSSASLNSTRDKNLHLQKALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLrgevaDLELQRVEAEGQLQQLR 1786
Cdd:PRK02224   527 ERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL-----KERIESLERIRTLLAAI 601

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1787 EVLRQRQEGEAAALNTVQKLQDERRllqERLGSLQRALAQLEAEKREVERSALRLEKDRVAlrRTLDKVEREKLRSHEDT 1866
Cdd:PRK02224   602 ADAEDEIERLREKREALAELNDERR---ERLAEKRERKRELEAEFDEARIEEAREDKERAE--EYLEQVEEKLDELREER 676

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*.
gi 1370455403 1867 VRLSAEKGRLDRTLTgaelELAEAQRQIQQLEAQVVVLEQSHSPAQ 1912
Cdd:PRK02224   677 DDLQAEIGAVENELE----ELEELRERREALENRVEALEALYDEAE 718
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 669-877 7.22e-06

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 51.49  E-value: 7.22e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  669 VQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDG--AMQAHEDAQREVQRLRSANELLSR--------- 737
Cdd:COG3096    443 LAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEveRSQAWQTARELLRRYRSQQALAQRlqqlraqla 522

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  738 EKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELV 817
Cdd:COG3096    523 ELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAP 602

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370455403  818 EVREALSRATLQRDMLQAE---KAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSA 877
Cdd:COG3096    603 AWLAAQDALERLREQSGEAladSQEVTAAMQQLLEREREATVERDELAARKQALESQIERLSQ 665
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1742-1976 8.01e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 50.53  E-value: 8.01e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1742 AARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQEgeaaalnTVQKLQDERRLLQERLGSLQ 1821
Cdd:COG4942     17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR-------RIRALEQELAALEAELAELE 89

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1822 RALAQLEAEKREVERSAlrleKDRVALRRTLDKVEREKLRSHEDTVRLSAEKGRLDRTLTGAELELAEA-QRQIQQLEAQ 1900
Cdd:COG4942     90 KEIAELRAELEAQKEEL----AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEElRADLAELAAL 165

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370455403 1901 VVVLEQSHspAQLEVdAQQQQLELQQEVERLRSAQAQTERTLEARERAHRQRVRGLEEQVSTLKGQLQQELRRSSA 1976
Cdd:COG4942    166 RAELEAER--AELEA-LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
779-1344 8.07e-06

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 51.22  E-value: 8.07e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  779 EEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELElsm 858
Cdd:PRK03918   158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE--- 234

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  859 tKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQErleelrleqevarqgL 938
Cdd:PRK03918   235 -ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK---------------L 298

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  939 EGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQ----EAAWRELEAERAQLQSQLQREQE-----ELLARLEAEKEELS 1009
Cdd:PRK03918   299 SEFYEEYLDELREIEKRLSRLEEEINGIEERIKEleekEERLEELKKKLKELEKRLEELEErhelyEEAKAKKEELERLK 378

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1010 EEIAALQQERDEGLLLAESEKQQALSLKESEKTALSEKLMGTRHSLATISLEMERQKRD-----AQSRQEQDRSTVNALT 1084
Cdd:PRK03918   379 KRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgRELTEEHRKELLEEYT 458

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1085 SELRDLRAQREEAAAAHAQEVRRLQEQARDLGKQRDscLREAEELRTQLRLLEDARDGLRRELLEaqRKLRESQEGREVQ 1164
Cdd:PRK03918   459 AELKRIEKELKEIEEKERKLRKELRELEKVLKKESE--LIKLKELAEQLKELEEKLKKYNLEELE--KKAEEYEKLKEKL 534

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1165 RQEAGELrRSLGEGAKEREALRRSNEELRSAVKKAESERISLK--------LANEDKEQKLALLEEARtavgKEAGELRT 1236
Cdd:PRK03918   535 IKLKGEI-KSLKKELEKLEELKKKLAELEKKLDELEEELAELLkeleelgfESVEELEERLKELEPFY----NEYLELKD 609

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1237 GLQEVERSRLEARRELQELRRQMKMLDSENTRLGR---ELAELQGRLAlgERAEKESRRETLGLRQRLLKGEASLEVMRQ 1313
Cdd:PRK03918   610 AEKELEREEKELKKLEEELDKAFEELAETEKRLEElrkELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEELEK 687

                          570       580       590
                   ....*....|....*....|....*....|...
gi 1370455403 1314 ELQVAQRKLQEQEGEFRTRE--RRLLGSLEEAR 1344
Cdd:PRK03918   688 RREEIKKTLEKLKEELEEREkaKKELEKLEKAL 720
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
661-787 8.85e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 51.07  E-value: 8.85e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  661 ALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKS 740
Cdd:COG4913    665 SAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR 744

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1370455403  741 NLAHSL---QVAQQQAEELRQE-REKLQAAQEELRRQRDRLEEEQEDAVQD 787
Cdd:COG4913    745 LELRALleeRFAAALGDAVERElRENLEERIDALRARLNRAEEELERAMRA 795
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1519-1758 1.18e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 49.76  E-value: 1.18e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1519 ATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQEESVRRSERERRATLDQVATLERSLQATESELRASQEKISKMKA 1598
Cdd:COG4942     11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1599 NETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLGLSDR----EAQAQALQDRVDSLQRQVADSEVKAGTLQ 1674
Cdd:COG4942     91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRlqylKYLAPARREQAEELRADLAELAALRAELE 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1675 LTVERLNGALAKVEESEGALRDKVRGLTEALAQSSASLNSTRDKNLHLQKaltacehDRQVLQERLDAARQALSEARKQS 1754
Cdd:COG4942    171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ-------EAEELEALIARLEAEAAAAAERT 243


                   ....
gi 1370455403 1755 SSLG 1758
Cdd:COG4942    244 PAAG 247
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 645-884 1.19e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 49.76  E-value: 1.19e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  645 PSPACSDSSTLALIHSALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQRE 724
Cdd:COG4942     12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  725 VQRLRSAnelLSREKSNLAHSLQVAQQQAeelRQEREKLQAAQEELRRQRDRLEEEQEDAVQDgarvRRELERSHRQLEQ 804
Cdd:COG4942     92 IAELRAE---LEAQKEELAELLRALYRLG---RQPPLALLLSPEDFLDAVRRLQYLKYLAPAR----REQAEELRADLAE 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  805 LEGKRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQ 884
Cdd:COG4942    162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 214-764 1.26e-05

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 50.50  E-value: 1.26e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  214 QEENQLLQQELSRVEDLLAQSRAERDELAIKYNAVSERLEQALRLEPGELET--QEPRGLVRQSVELRRQLQEEQASYRR 291
Cdd:pfam15921  309 RNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEarTERDQFSQESGNLDDQLQKLLADLHK 388

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  292 KLQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLLE--RSGELEQQRLRDTEHSQDLESALIR-----LEEEQQRSA 364
Cdd:pfam15921  389 REKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEvqRLEALLKAMKSECQGQMERQMAAIQgknesLEKVSSLTA 468

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  365 SLAQVNAMLREQLDQAGSANQALSEDIRKVTnDWTRCRKELEhreaawrREEESFNAYFSNEHSRLLLLWRQVVGFRRLV 444
Cdd:pfam15921  469 QLESTKEMLRKVVEELTAKKMTLESSERTVS-DLTASLQEKE-------RAIEATNAEITKLRSRVDLKLQELQHLKNEG 540

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  445 SEVK-MFTERDLLQLggELARTSRAVQEAGLGLSTGLRLAESRAEAALEKQaLLQAQLEEQLRDKVLREKDLAQQQMQSD 523
Cdd:pfam15921  541 DHLRnVQTECEALKL--QMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQ-VEKAQLEKEINDRRLELQEFKILKDKKD 617

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  524 LDKADLSARVTELGLAVKRLEKQNLEKDQVNKDLTEKLEALESLRLQEQAALE--TEDGEGLQQTLRDLAQAV-LSDSES 600
Cdd:pfam15921  618 AKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNslSEDYEVLKRNFRNKSEEMeTTTNKL 697

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  601 GVQLSGSERTADASNGSLRGLSGqrtpspprrsspgrgrsprrgpspacSDSSTLALIHSAlhkrQLQVQDMRGRYEASQ 680
Cdd:pfam15921  698 KMQLKSAQSELEQTRNTLKSMEG--------------------------SDGHAMKVAMGM----QKQITAKRGQIDALQ 747

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  681 DLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNL-----AHSLQVAQQQAEE 755
Cdd:pfam15921  748 SKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMevaldKASLQFAECQDII 827


                   ....*....
gi 1370455403  756 LRQEREKLQ 764
Cdd:pfam15921  828 QRQEQESVR 836
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
 1481-1820 1.39e-05

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 49.89  E-value: 1.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1481 LREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQEESVRR 1560
Cdd:pfam07888   47 LQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAA 126

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1561 SERERRATLDQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESrtvklelQRRSLEGELQRSRL 1640
Cdd:pfam07888  127 HEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEE-------ELRSLSKEFQELRN 199

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1641 GLSDREAQAQALQDRVDSL-------QRQVADSEVKAGTLQLTVERLNGALAKVE------ESEGALRDKVRG-LTEALA 1706
Cdd:pfam07888  200 SLAQRDTQVLQLQDTITTLtqklttaHRKEAENEALLEELRSLQERLNASERKVEglgeelSSMAAQRDRTQAeLHQARL 279

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1707 QSSASLNSTRDKNLHLQKALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLE-----------LQR 1775
Cdd:pfam07888  280 QAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEvelgrekdcnrVQL 359

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*
gi 1370455403 1776 VEAEGQLQQLREVLRQRQEGEAAALNTVQKLQDERRLLQERLGSL 1820
Cdd:pfam07888  360 SESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETV 404
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 1475-1976 1.43e-05

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 50.17  E-value: 1.43e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1475 EAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQ 1554
Cdd:pfam01576  232 AELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDT 311

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1555 EESVRRSERERRATLDQVATLERSLqatESELRASQEKISKMKANET--------KLEGDKR---RLKEVLDASESRTVK 1623
Cdd:pfam01576  312 LDTTAAQQELRSKREQEVTELKKAL---EEETRSHEAQLQEMRQKHTqaleelteQLEQAKRnkaNLEKAKQALESENAE 388

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1624 LELQRRSLEGELQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTE 1703
Cdd:pfam01576  389 LQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLES 468

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1704 ALAQSSASLNSTRDKNLHLQKALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLEL---QRVEAEG 1780
Cdd:pfam01576  469 QLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGtleALEEGKK 548

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1781 QLQQLREVLRQRQEGEAAALNTVQKL--------------QDERRLLQERLGSLQRALAQL------------------E 1828
Cdd:pfam01576  549 RLQRELEALTQQLEEKAAAYDKLEKTknrlqqelddllvdLDHQRQLVSNLEKKQKKFDQMlaeekaisaryaeerdraE 628

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1829 AEKREVERSALRLEKDRVALRRTLDKVER---------EKLRSHEDTVRLSAEKgrLDRTLTGAELELAEAQRQIQQLEA 1899
Cdd:pfam01576  629 AEAREKETRALSLARALEEALEAKEELERtnkqlraemEDLVSSKDDVGKNVHE--LERSKRALEQQVEEMKTQLEELED 706

                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370455403 1900 QVVVLEQSHspAQLEVDaqqqqlelqqeverLRSAQAQTERTLEARERAHRQRVRGLEEQVSTLKGQLQQELRRSSA 1976
Cdd:pfam01576  707 ELQATEDAK--LRLEVN--------------MQALKAQFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQ 767
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
675-1260 1.50e-05

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 50.06  E-value: 1.50e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  675 RYEASQDLLGTLRKQLsdsESERRALEEQLQRlrdktdgamqaHEDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAE 754
Cdd:PRK03918   159 DYENAYKNLGEVIKEI---KRRIERLEKFIKR-----------TENIEELIKEKEKELEEVLREINEISSELPELREELE 224

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  755 ELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVrRELErshRQLEQLEGKRSVLAKELVEVREALSRATlqrdmlq 834
Cdd:PRK03918   225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKI-RELE---ERIEELKKEIEELEEKVKELKELKEKAE------- 293

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  835 aEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQdkldLNRLVAQLEEEKSALQGRQRQAEqea 914
Cdd:PRK03918   294 -EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEE----LKKKLKELEKRLEELEERHELYE--- 365

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  915 TVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQ-EAAWRELEAERAQLQSQLQRE 993
Cdd:PRK03918   366 EAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKElKKAIEELKKAKGKCPVCGREL 445

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  994 QEELLARLEAEKEELSEEIAALQQERDEGL--LLAESEKQQALSLKESEKTAL---SEKLMGTRHSLATISLE-MERQKR 1067
Cdd:PRK03918   446 TEEHRKELLEEYTAELKRIEKELKEIEEKErkLRKELRELEKVLKKESELIKLkelAEQLKELEEKLKKYNLEeLEKKAE 525

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1068 DAQSRQEQ------DRSTVNALTSELRDLRAQREEAAAAHAQEVRRLQEQARDLGKQRDSCLreaEELRTQLRLLEDARD 1141
Cdd:PRK03918   526 EYEKLKEKliklkgEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESV---EELEERLKELEPFYN 602

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1142 GLrRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERIS---LKLANE--DKEQK 1216
Cdd:PRK03918   603 EY-LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELReeyLELSRElaGLRAE 681

                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1217 LALLEEARTAVGKEAGELRTGLQEVERSRLE------ARRELQELRRQMK 1260
Cdd:PRK03918   682 LEELEKRREEIKKTLEKLKEELEEREKAKKEleklekALERVEELREKVK 731
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 652-1293 1.53e-05

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 50.17  E-value: 1.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  652 SSTLALIHSALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSa 731
Cdd:pfam01576  228 QAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKT- 306

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  732 nELLSREKSNLAHSLQVAQQQAE------ELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHrqlEQL 805
Cdd:pfam01576  307 -ELEDTLDTTAAQQELRSKREQEvtelkkALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAK---QAL 382

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  806 EGKRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQd 885
Cdd:pfam01576  383 ESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSK- 461

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  886 klDLNRLVAQLEEEKSALQGRQRQAEQEATvareeqerleeLRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQ 965
Cdd:pfam01576  462 --DVSSLESQLQDTQELLQEETRQKLNLST-----------RLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSD 528

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  966 LQEQLAQEAAWRELEAERaqlQSQLQREQEELLARLEAEKEELSEEIAA---LQQERDEgLLLAESEKQQALSLKESEKT 1042
Cdd:pfam01576  529 MKKKLEEDAGTLEALEEG---KKRLQRELEALTQQLEEKAAAYDKLEKTknrLQQELDD-LLVDLDHQRQLVSNLEKKQK 604

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1043 ALSEKLMGTRHSLATISLEMERQKRDAQSRQEQDRSTVNALtSELRDLRAQREEAAAAHAQEVRRLQEQARDLGKQ---- 1118
Cdd:pfam01576  605 KFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARAL-EEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNvhel 683

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1119 ---RDSCLREAEELRTQLRLLED----ARDGLRRelLEAQRKLRESQEGREVQ-RQEAG-ELRRSLGEGAKEREALRrsn 1189
Cdd:pfam01576  684 ersKRALEQQVEEMKTQLEELEDelqaTEDAKLR--LEVNMQALKAQFERDLQaRDEQGeEKRRQLVKQVRELEAEL--- 758

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1190 EELRSAVKKAESERISLKLANEDKEQKLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRL 1269
Cdd:pfam01576  759 EDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLKNL 838

                          650       660
                   ....*....|....*....|....
gi 1370455403 1270 GRELAELQGRLALGERAEKESRRE 1293
Cdd:pfam01576  839 EAELLQLQEDLAASERARRQAQQE 862
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
 655-1080 1.80e-05

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 49.72  E-value: 1.80e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  655 LALIHSALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSES---ERRALE---EQLQRLRDKTDGAMQAHE----DAQRE 724
Cdd:pfam05483  379 LKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKlldEKKQFEkiaEELKGKEQELIFLLQAREkeihDLEIQ 458

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  725 VQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQ 804
Cdd:pfam05483  459 LTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIEN 538

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  805 LEGKRSVLAKELVEVREALSRatlQRDmlqaekaEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNEslaq 884
Cdd:pfam05483  539 LEEKEMNLRDELESVREEFIQ---KGD-------EVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIE---- 604

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  885 dklDLNRLVAQLEEEKSALQGRQRQAEQEATVareeqerleelrleQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERS 964
Cdd:pfam05483  605 ---NKNKNIEELHQENKALKKKGSAENKQLNA--------------YEIKVNKLELELASAKQKFEEIIDNYQKEIEDKK 667

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  965 QLQEQLAQEAAWRELEAERA-QLQSQLQREQEELLARLEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKTA 1043
Cdd:pfam05483  668 ISEEKLLEEVEKAKAIADEAvKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIE 747

                          410       420       430
                   ....*....|....*....|....*....|....*....
gi 1370455403 1044 LSEklmgTRHSLATI--SLEMERQKRDAQSRQEQDRSTV 1080
Cdd:pfam05483  748 LSN----IKAELLSLkkQLEIEKEEKEKLKMEAKENTAI 782
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1211-1830 1.99e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 49.91  E-value: 1.99e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1211 EDKEQKLALLEEARTAvGKEAGELRTGLQEVERsrLEARRELQELRRQMKMLDSENTRLGRELAELQGRLALGERAEKES 1290
Cdd:COG4913    245 EDAREQIELLEPIREL-AERYAAARERLAELEY--LRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDAL 321

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1291 RRETLGLRQRLLK-GEASLEVMRQELQVAQRKLQEQEGEfRTRERRLLGSLEEARGTEKQQL--------DHARGLELKL 1361
Cdd:COG4913    322 REELDELEAQIRGnGGDRLEQLEREIERLERELEERERR-RARLEALLAALGLPLPASAEEFaalraeaaALLEALEEEL 400

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1362 EAARAEAAELGLRLSAAEGRAQGLEAELARVEVQRRAAEAQLGGLRSALRRGLGLgrapSPAPRPVPGS----PARDAPA 1437
Cdd:COG4913    401 EALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGL----DEAELPFVGElievRPEEERW 476

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1438 EGSGEG-LNSpstlecspgsqppspgPATSPASPDLDPEAVRGALReflqelrsaqRERDELRTQTSALNRQLAEMEAER 1516
Cdd:COG4913    477 RGAIERvLGG----------------FALTLLVPPEHYAAALRWVN----------RLHLRGRLVYERVRTGLPDPERPR 530

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1517 DSATSRARQLQkaVAESEeARRSVDGRLSGvqaelalqeesvrRSERERRATLDQVATLERSLQATeselrasqekiSKM 1596
Cdd:COG4913    531 LDPDSLAGKLD--FKPHP-FRAWLEAELGR-------------RFDYVCVDSPEELRRHPRAITRA-----------GQV 583

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1597 KANETKLE-GDKRRLKE--VLDAS-ESRTVKLELQRRSLEGELQRSRLGLSDREAQAQALQDRVDSLQR--QVADSEVKA 1670
Cdd:COG4913    584 KGNGTRHEkDDRRRIRSryVLGFDnRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaEYSWDEIDV 663

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1671 GTLQLTVERLNGALAKVEESEGALRdkvrgltealaqssaslnstrdknlhlqkaltacehdrqVLQERLDAARQALSEA 1750
Cdd:COG4913    664 ASAEREIAELEAELERLDASSDDLA---------------------------------------ALEEQLEELEAELEEL 704

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1751 RKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQL----REVLRQRQEGEAAALNTVQKLQDERRLLQERLGSLQRALAQ 1826
Cdd:COG4913    705 EEELDELKGEIGRLEKELEQAEEELDELQDRLEAAedlaRLELRALLEERFAAALGDAVERELRENLEERIDALRARLNR 784


                   ....
gi 1370455403 1827 LEAE 1830
Cdd:COG4913    785 AEEE 788
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 661-913 2.94e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 49.30  E-value: 2.94e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  661 ALHKRQLQVQDMRGRYEASQdlLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKS 740
Cdd:TIGR02169  773 DLHKLEEALNDLEARLSHSR--IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  741 NLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEqedavqdgarvRRELErshRQLEQLEGKRSVLAKELVEVR 820
Cdd:TIGR02169  851 SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE-----------RDELE---AQLRELERKIEELEAQIEKKR 916

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  821 EALSRATLQRDMLQAEKAEVaEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALN-------ESLAQDKLDLNRLV 893
Cdd:TIGR02169  917 KRLSELKAKLEALEEELSEI-EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNmlaiqeyEEVLKRLDELKEKR 995

                          250       260
                   ....*....|....*....|
gi 1370455403  894 AQLEEEKSALQGRQRQAEQE 913
Cdd:TIGR02169  996 AKLEEERKAILERIEEYEKK 1015
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
888-1412 3.17e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 49.14  E-value: 3.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  888 DLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQ 967
Cdd:COG4913    226 AADALVEHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELA 305

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  968 EQLAQEAAWR----ELEAERAQLQSQLQREQEELLARLEAEKEELSEEIAALQQERDEgllLAESEKQQALSLKESEK-- 1041
Cdd:COG4913    306 RLEAELERLEarldALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRAR---LEALLAALGLPLPASAEef 382

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1042 TALSEKLMGTRHSLATISLEMERQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQEVRRLqeqARDLGKQRDS 1121
Cdd:COG4913    383 AALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL---AEALGLDEAE 459

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1122 C--------LREAEE---------LRTQ-LRLLEDARDglRRELLEA--QRKLRESQEGREVQRQEAGELRRSLGEGA-- 1179
Cdd:COG4913    460 LpfvgelieVRPEEErwrgaiervLGGFaLTLLVPPEH--YAAALRWvnRLHLRGRLVYERVRTGLPDPERPRLDPDSla 537

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1180 -----KEREALRRSNEEL--RSAVKKAESERislKLANEDKeqklALLEEARTAVGKEAGELRTGLQEVE--------RS 1244
Cdd:COG4913    538 gkldfKPHPFRAWLEAELgrRFDYVCVDSPE---ELRRHPR----AITRAGQVKGNGTRHEKDDRRRIRSryvlgfdnRA 610

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1245 RLEA-RRELQELRRQMKMLDSENTRLGRELAELQGRLALGERAEK------------ESRRETLGLRQRLLKGEASLEVM 1311
Cdd:COG4913    611 KLAAlEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEyswdeidvasaeREIAELEAELERLDASSDDLAAL 690

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1312 RQELQVAQRKLQEQEGEFRTRERRlLGSLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRLSAAEGRAQGLEAELAR 1391
Cdd:COG4913    691 EEQLEELEAELEELEEELDELKGE-IGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRE 769

                          570       580
                   ....*....|....*....|..
gi 1370455403 1392 -VEVQRRAAEAQLGGLRSALRR 1412
Cdd:COG4913    770 nLEERIDALRARLNRAEEELER 791
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1614-1852 3.42e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 49.14  E-value: 3.42e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1614 LDASESRTVKLELQRRSLEG--ELQRSRLGLSDREAQAQAL---------QDRVDSLQRQVADsevkagtLQLTVERLNG 1682
Cdd:COG4913    237 LERAHEALEDAREQIELLEPirELAERYAAARERLAELEYLraalrlwfaQRRLELLEAELEE-------LRAELARLEA 309

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1683 ALAKVEESEGALRDKVRGLTEALAQSSAslnstrdknlhlqKALTACEHDRQVLQERLDAARQALSEARKQssslgeqvq 1762
Cdd:COG4913    310 ELERLEARLDALREELDELEAQIRGNGG-------------DRLEQLEREIERLERELEERERRRARLEAL--------- 367

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1763 tlrgeVADLELQRVEAEGQLQQLREVLRQRQEGEAAALntvQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLE 1842
Cdd:COG4913    368 -----LAALGLPLPASAEEFAALRAEAAALLEALEEEL---EALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIP 439

                          250
                   ....*....|
gi 1370455403 1843 KDRVALRRTL 1852
Cdd:COG4913    440 ARLLALRDAL 449
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 694-1309 3.49e-05

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 49.02  E-value: 3.49e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  694 ESERRALEEQLQRLRDKtdgamqaHEDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQ 773
Cdd:pfam01576    4 EEEMQAKEEELQKVKER-------QQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEI 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  774 RDRLEeeqedavqdgARVRRELERShrqlEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVE 853
Cdd:pfam01576   77 LHELE----------SRLEEEEERS----QQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILL 142

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  854 LELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQeatvareeqerleeLRLEQEV 933
Cdd:pfam01576  143 LEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEK--------------GRQELEK 208

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  934 ARQGLEGslrvaeqaqealeqqlptlrhERSQLQEQLAqeaawrELEAERAQLQSQLQREQEELLARLEAEKEELSEEIA 1013
Cdd:pfam01576  209 AKRKLEG---------------------ESTDLQEQIA------ELQAQIAELRAQLAKKEEELQAALARLEEETAQKNN 261

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1014 ALQQERDEGLLLAESE-----KQQALSLKESEKTALSEKLMGTRHSLATiSLEMERQKRDAQSRQEQDRSTVN-ALTSEL 1087
Cdd:pfam01576  262 ALKKIRELEAQISELQedlesERAARNKAEKQRRDLGEELEALKTELED-TLDTTAAQQELRSKREQEVTELKkALEEET 340

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1088 RDLRAQREEAAAAHAQEVRRLQEQAR-------DLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEG 1160
Cdd:pfam01576  341 RSHEAQLQEMRQKHTQALEELTEQLEqakrnkaNLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQAR 420

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1161 REVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEARTAVGKEAGEL---RTG 1237
Cdd:pfam01576  421 LSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLedeRNS 500

                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1370455403 1238 LQEVERSRLEARRELQelrRQMKMLDSENTRLGRELAELQGRLALGERAEKESRRETLGLRQRLLKGEASLE 1309
Cdd:pfam01576  501 LQEQLEEEEEAKRNVE---RQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYD 569
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1038-1400 4.73e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 48.50  E-value: 4.73e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1038 ESEKTALSEKLMGTRHSLATISLEMER---QKRDAQ----------SRQEQDRSTVNALTSELRDLR---AQREEAAAAH 1101
Cdd:PRK02224   198 EKEEKDLHERLNGLESELAELDEEIERyeeQREQARetrdeadevlEEHEERREELETLEAEIEDLRetiAETEREREEL 277

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1102 AQEVRRLQEQARDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLREsqegrevQRQEAGELRRSLGEGAKE 1181
Cdd:PRK02224   278 AEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEE-------CRVAAQAHNEEAESLRED 350

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1182 REALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELRRQMKM 1261
Cdd:PRK02224   351 ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE 430

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1262 LDSENTRLGRELAELQGRLA------LGERAEKESRRETLG-LRQRLLKGEASLEVMRQELQVAQRKLQEQEgEFRTRER 1334
Cdd:PRK02224   431 LEATLRTARERVEEAEALLEagkcpeCGQPVEGSPHVETIEeDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAED 509

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370455403 1335 RLLGSLEEARGTEKQQLDHARGLELKLEAARAEAAELG-LRLSAAEGRAQGLEAELARVEVQRRAAE 1400
Cdd:PRK02224   510 RIERLEERREDLEELIAERRETIEEKRERAEELRERAAeLEAEAEEKREAAAEAEEEAEEAREEVAE 576
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1063-1281 6.57e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 47.45  E-value: 6.57e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1063 ERQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQEVRRLQEQARDLGKQRDSCLREAEELRTQLRLLEDARDG 1142
Cdd:COG4942     26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1143 LRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEE 1222
Cdd:COG4942    106 LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1370455403 1223 ARTAVGKEAGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRLGRELAELQGRLA 1281
Cdd:COG4942    186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1616-1836 7.23e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 47.45  E-value: 7.23e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1616 ASESRTVKLELQRRSLEGELQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALR 1695
Cdd:COG4942     17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1696 DKVRGLTEALAQSSASL----NSTRDKNLHLQKALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADL 1771
Cdd:COG4942     97 AELEAQKEELAELLRALyrlgRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370455403 1772 ELQRVEAEGQ---LQQLREvlrQRQEGEAAALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVER 1836
Cdd:COG4942    177 EALLAELEEEraaLEALKA---ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 714-877 8.94e-05

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 46.07  E-value: 8.94e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  714 AMQAHEDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVR- 792
Cdd:COG1579      1 AMPEDLRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEe 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  793 --------RELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAgrvELELSMTKLRAE 864
Cdd:COG1579     81 qlgnvrnnKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKA---ELDEELAELEAE 157

                          170
                   ....*....|...
gi 1370455403  865 EASLQDSLSKLSA 877
Cdd:COG1579    158 LEELEAEREELAA 170
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
685-953 1.19e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 47.32  E-value: 1.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  685 TLRKQLSDSESERRALEEQLQRLRDKTdgamqahEDAQREVQRLRSANELLSreksnLAHSLQVAQQQAEELRQEREKLQ 764
Cdd:COG3206    165 NLELRREEARKALEFLEEQLPELRKEL-------EEAEAALEEFRQKNGLVD-----LSEEAKLLLQQLSELESQLAEAR 232

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  765 AAQEELRRQRDRLEEEQEDAVQDGARVRrelerSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEAL 844
Cdd:COG3206    233 AELAEAEARLAALRAQLGSGPDALPELL-----QSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQL 307

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  845 TK-AEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLvaqleeeksalqgrqrqaEQEATVAREEQER 923
Cdd:COG3206    308 QQeAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRL------------------EREVEVARELYES 369

                          250       260       270
                   ....*....|....*....|....*....|
gi 1370455403  924 LEELRLEQEVARQGLEGSLRVAEQAQEALE 953
Cdd:COG3206    370 LLQRLEEARLAEALTVGNVRVIDPAVVPLK 399
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1105-1321 1.71e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 46.30  E-value: 1.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1105 VRRLQEQARDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELrrslgegakerea 1184
Cdd:COG4942     43 LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL------------- 109

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1185 lrrsneeLRSAVKKAESERISLKLANEDKEQ---KLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELRRQMKM 1261
Cdd:COG4942    110 -------LRALYRLGRQPPLALLLSPEDFLDavrRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1262 LDSENTRLGRELAELQGRLALGERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRK 1321
Cdd:COG4942    183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
PTZ00121 PTZ00121
MAEBL; Provisional
 222-875 1.78e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.06  E-value: 1.78e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  222 QELSRVEDLLAQSRAERDELAIKYNAV-----------SERLEQALRLEPGELETQEPRGL--VRQSVELRRQLQEEQAS 288
Cdd:PTZ00121  1185 EEVRKAEELRKAEDARKAEAARKAEEErkaeearkaedAKKAEAVKKAEEAKKDAEEAKKAeeERNNEEIRKFEEARMAH 1264

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  289 YRRKLQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLLERSGELEQQRLRD-----TEHSQDLESALIRLEEEQQRS 363
Cdd:PTZ00121  1265 FARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADeakkkAEEAKKKADAAKKKAEEAKKA 1344

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  364 ASLAQVnamlreqldQAGSANQALSEDIRKVTNDWTRCRKELEHREAAWRREEEsfnayfsnehsrllllwrqvvgfRRL 443
Cdd:PTZ00121  1345 AEAAKA---------EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE-----------------------KKK 1392

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  444 VSEVKMFTERDLLQlGGELARTSRAVQEAglglstglrlAESRAEAALEKQA-LLQAQLEEQLRDKVLREKDLAQQQMQS 522
Cdd:PTZ00121  1393 ADEAKKKAEEDKKK-ADELKKAAAAKKKA----------DEAKKKAEEKKKAdEAKKKAEEAKKADEAKKKAEEAKKAEE 1461

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  523 DLDKADLSARVTELglavKRLEKQNLEKDQVNKDLTEKLEALESLRLQEQAALETEDGEGLQQTLRDLAQAVLSDSESGV 602
Cdd:PTZ00121  1462 AKKKAEEAKKADEA----KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD 1537

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  603 QLSGSERTADASngSLRGLSGQRTPSPPRRSSPGRGRSPRRgpspacsdsstlaliHSALHKRQLQVQDMRGRYEASQDL 682
Cdd:PTZ00121  1538 EAKKAEEKKKAD--ELKKAEELKKAEEKKKAEEAKKAEEDK---------------NMALRKAEEAKKAEEARIEEVMKL 1600

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  683 LGTLRKQlsDSESERRALEEQL--QRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEr 760
Cdd:PTZ00121  1601 YEEEKKM--KAEEAKKAEEAKIkaEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA- 1677

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  761 EKLQAAQEELRRQRDRLEEEQEDAvQDGARVRRELERSHRQLEQL---EGKRSVLAKELVEVREALSRATLQRDMLQAEK 837
Cdd:PTZ00121  1678 EEAKKAEEDEKKAAEALKKEAEEA-KKAEELKKKEAEEKKKAEELkkaEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756

                          650       660       670
                   ....*....|....*....|....*....|....*...
gi 1370455403  838 AEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKL 875
Cdd:PTZ00121  1757 KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM 1794
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
1742-1915 1.96e-04

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 46.39  E-value: 1.96e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1742 AARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLREVL---RQRQEGEAAALNTVQKLQDERRLLQERLG 1818
Cdd:COG2433    403 HEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELseaRSEERREIRKDREISRLDREIERLERELE 482

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1819 SLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRSHEDTVRLSAEKGRLDRTLTGAELELAEaqrQIQQLE 1898
Cdd:COG2433    483 EERERIEELKRKLERLKELWKLEHSGELVPVKVVEKFTKEAIRRLEEEYGLKEGDVVYLRDASGAGRSTAE---LLAEAG 559

                          170
                   ....*....|....*..
gi 1370455403 1899 AQVVVLEQSHSPAQLEV 1915
Cdd:COG2433    560 PRAVIVPGELSEAADEV 576
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1179-1413 2.54e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.53  E-value: 2.54e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1179 AKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELRRQ 1258
Cdd:COG4942     26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1259 MKMLDSENTRLGR-----------ELAELQGRLALGERAEKESRRETLGLRQRLlkgeASLEVMRQELQVAQRKLQEQEG 1327
Cdd:COG4942    106 LAELLRALYRLGRqpplalllspeDFLDAVRRLQYLKYLAPARREQAEELRADL----AELAALRAELEAERAELEALLA 181

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1328 EFRTRERRLlgsleEARGTEKQQLdharglelkLEAARAEAAELGLRLSAAEGRAQGLEAELARVEVQRRAAEAQLGGLR 1407
Cdd:COG4942    182 ELEEERAAL-----EALKAERQKL---------LARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247


                   ....*.
gi 1370455403 1408 SALRRG 1413
Cdd:COG4942    248 FAALKG 253
mukB PRK04863
chromosome partition protein MukB;
697-997 2.58e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 46.49  E-value: 2.58e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  697 RRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSReksNLAHSLQVAQQQAEElrqereklqAAQEELRRQRDR 776
Cdd:PRK04863   781 RAAREKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSR---FIGSHLAVAFEADPE---------AELRQLNRRRVE 848

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  777 LEEEQEDAVQDGARVRRELERSHRQLEQLEG--------KRSVLAKELVEVREalsratlqrdmlQAEKAEVAEALTKAE 848
Cdd:PRK04863   849 LERALADHESQEQQQRSQLEQAKEGLSALNRllprlnllADETLADRVEEIRE------------QLDEAEEAKRFVQQH 916

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  849 AGRVE-LELSMTKLRAEE---ASLQDSLSKLSALNESLAQDKLDLNRLVAQ------------LEEEK---SALQGRQRQ 909
Cdd:PRK04863   917 GNALAqLEPIVSVLQSDPeqfEQLKQDYQQAQQTQRDAKQQAFALTEVVQRrahfsyedaaemLAKNSdlnEKLRQRLEQ 996

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  910 AEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTL------------RHERSQLQEQLaqeaawR 977
Cdd:PRK04863   997 AEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLgvpadsgaeeraRARRDELHARL------S 1070

                          330       340
                   ....*....|....*....|
gi 1370455403  978 ELEAERAQLQSQLQREQEEL 997
Cdd:PRK04863  1071 ANRSRRNQLEKQLTFCEAEM 1090
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 277-1047 2.62e-04

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 46.12  E-value: 2.62e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  277 ELRRQLQEEQASYRRKLQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLL---ERSGELEQQRLRDTEHSQDLESAL 353
Cdd:pfam02463  194 ELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLrdeQEEIESSKQEIEKEEEKLAQVLKE 273

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  354 IRLEEEQQRSAS--LAQVNAMLREQLDQAGSANQALSEDIRKVTNDWTRCRK-------------ELEHREAAWRREEES 418
Cdd:pfam02463  274 NKEEEKEKKLQEeeLKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKaekelkkekeeieELEKELKELEIKREA 353

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  419 FNAYFSNEHSRLLLLWRQVVGFRRLVSEVKMFTERDLLQLGGELARTSRAVQEAglglSTGLRLAESRAEAALEKQALLQ 498
Cdd:pfam02463  354 EEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEA----QLLLELARQLEDLLKEEKKEEL 429

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  499 AQLEEQLRDKVLREKDLAQQQMQSDLDKADLSARVTELGLAVKRLEKQNLEKDQVNKDLTEKLEALESLRLQEQAALETE 578
Cdd:pfam02463  430 EILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGL 509

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  579 DGEGL-------------QQTLRDLAQAVLSDSESGVQLSGSERTADASNGSLRGLSGQRTPSPPRRSSPGRGRSP---- 641
Cdd:pfam02463  510 KVLLAlikdgvggriisaHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPklkl 589

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  642 --RRGPSPACSDSSTLALIHSALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHE 719
Cdd:pfam02463  590 plKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLS 669

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  720 DAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSH 799
Cdd:pfam02463  670 ELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEE 749

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  800 RQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALN 879
Cdd:pfam02463  750 EEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEK 829

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  880 ESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTL 959
Cdd:pfam02463  830 IKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKL 909

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  960 RHERSQ--------------LQEQLAQEAAWRELEAERAQLQSQLQREQEELLARLEAEKEELSeeiaalqqERDEGLLL 1025
Cdd:pfam02463  910 NLLEEKeneieerikeeaeiLLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELG--------KVNLMAIE 981

                          810       820
                   ....*....|....*....|..
gi 1370455403 1026 AESEKQQALSLKESEKTALSEK 1047
Cdd:pfam02463  982 EFEEKEERYNKDELEKERLEEE 1003
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 686-1209 2.73e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 46.26  E-value: 2.73e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  686 LRKQLSDSESERRALEEQLQRLRDktdgamQAHEDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQA 765
Cdd:pfam15921  283 LTEKASSARSQANSIQSQLEIIQE------QARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANS 356

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  766 AQEELRRQRDRLEEEQ---EDAVQ----DGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAeka 838
Cdd:pfam15921  357 ELTEARTERDQFSQESgnlDDQLQkllaDLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEA--- 433

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  839 eVAEALTKAEAGRVELELSMTKLRAEeaslqdSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQ------ 912
Cdd:pfam15921  434 -LLKAMKSECQGQMERQMAAIQGKNE------SLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDltaslq 506

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  913 ------EATVAREEQERLEELRLEQEVARQGLEGS-LRVAEQAQEALEQQLP-------TLRHERSQLQEQLAQEA-AWR 977
Cdd:pfam15921  507 ekeraiEATNAEITKLRSRVDLKLQELQHLKNEGDhLRNVQTECEALKLQMAekdkvieILRQQIENMTQLVGQHGrTAG 586

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  978 ELEAERAQLQSQLQREQEELLA------RLEAEKEELSEEIAALQQERDEgLLLAESEKQQALSLKESEKTALSEKLMGT 1051
Cdd:pfam15921  587 AMQVEKAQLEKEINDRRLELQEfkilkdKKDAKIRELEARVSDLELEKVK-LVNAGSERLRAVKDIKQERDQLLNEVKTS 665

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1052 RHSLATISLEMERQKRDAQSRQEQDRSTVNALTSELRDLRAQReeaaaahaqevrrlqEQARDLGKQRDS----CLREAE 1127
Cdd:pfam15921  666 RNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSEL---------------EQTRNTLKSMEGsdghAMKVAM 730

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1128 ELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLK 1207
Cdd:pfam15921  731 GMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810


                   ..
gi 1370455403 1208 LA 1209
Cdd:pfam15921  811 VA 812
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
 694-999 2.79e-04

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 45.66  E-value: 2.79e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  694 ESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQ 773
Cdd:pfam07888   72 ERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETE 151

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  774 RDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVE 853
Cdd:pfam07888  152 LERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAE 231

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  854 LELSMTKLRAEEASLQDSLSKLSALNEslaqdklDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEV 933
Cdd:pfam07888  232 NEALLEELRSLQERLNASERKVEGLGE-------ELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQ 304

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  934 ARQGLEGSL-----RVAEQAQE--ALEQQLPTLRHERSQLQEQLAQE---------AAWRELEAERAQLQSqLQREQEEL 997
Cdd:pfam07888  305 ERETLQQSAeadkdRIEKLSAElqRLEERLQEERMEREKLEVELGREkdcnrvqlsESRRELQELKASLRV-AQKEKEQL 383


                   ..
gi 1370455403  998 LA 999
Cdd:pfam07888  384 QA 385
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 685-1260 3.93e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 45.40  E-value: 3.93e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  685 TLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANE---LLSREKSNLAHSLQVAQQQAEELRQERE 761
Cdd:TIGR04523  163 DLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQknkSLESQISELKKQNNQLKDNIEKKQQEIN 242

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  762 KLQAAQEELRRQRDRLEEEQEdavqdgaRVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRatlqrdmLQAEKAEVA 841
Cdd:TIGR04523  243 EKTTEISNTQTQLNQLKDEQN-------KIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISD-------LNNQKEQDW 308

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  842 EALTKAEagrvelelsmtkLRAEEASLQDSLSKLSALNESLAQdkldLNRLVAQLEEEKSAL----QGRQRQAEQEatva 917
Cdd:TIGR04523  309 NKELKSE------------LKNQEKKLEEIQNQISQNNKIISQ----LNEQISQLKKELTNSesenSEKQRELEEK---- 368

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  918 reeqerleelrleqevarqglegslrvaeqaqealEQQLPTLRHERSQLQEQLAQeaawreLEAERAQLQSQLQrEQEEL 997
Cdd:TIGR04523  369 -----------------------------------QNEIEKLKKENQSYKQEIKN------LESQINDLESKIQ-NQEKL 406

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  998 LARLEAEKEELSEEIAALQQERDEglLLAESEKQQA----LSLKESEKTALSEKLMGTRHSLATISLEMERQKRDAQSRQ 1073
Cdd:TIGR04523  407 NQQKDEQIKKLQQEKELLEKEIER--LKETIIKNNSeikdLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL 484

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1074 EQDRSTVNALTSELRDLRAQreeaaaahaqeVRRLQEQARDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRK 1153
Cdd:TIGR04523  485 EQKQKELKSKEKELKKLNEE-----------KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFE 553

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1154 LRESQEGREVQrqeagELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEARTAVGKEAGE 1233
Cdd:TIGR04523  554 LKKENLEKEID-----EKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEK 628

                          570       580
                   ....*....|....*....|....*..
gi 1370455403 1234 LRTGLQEVERSRLEARRELQELRRQMK 1260
Cdd:TIGR04523  629 LSSIIKNIKSKKNKLKQEVKQIKETIK 655
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
661-1037 4.21e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 45.14  E-value: 4.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  661 ALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANEllsREKS 740
Cdd:COG4717    119 EKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATE---EELQ 195

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  741 NLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAvQDGARVRRELE--RSHRQLEQLEGKRSVLAKELVE 818
Cdd:COG4717    196 DLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA-ALEERLKEARLllLIAAALLALLGLGGSLLSLILT 274

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  819 VREAL----SRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVA 894
Cdd:COG4717    275 IAGVLflvlGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLR 354

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  895 QLEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVaEQAQEALEQQLPTLRHERSQLQEQlAQEA 974
Cdd:COG4717    355 EAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEEL-EELEEQLEELLGELEELLEALDEE-ELEE 432

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1370455403  975 AWRELEAERAQLQSQLQREQEELLA-RLEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLK 1037
Cdd:COG4717    433 ELEELEEELEELEEELEELREELAElEAELEQLEEDGELAELLQELEELKAELRELAEEWAALK 496
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 1722-1936 4.37e-04

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 44.82  E-value: 4.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1722 LQKALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLRQR--------- 1792
Cdd:COG3883     21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERaralyrsgg 100

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1793 ----------QEGEAAALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRS 1862
Cdd:COG3883    101 svsyldvllgSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQ 180

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1370455403 1863 HEDTVRLSAEKGRLDRTLTGAELELAEAQRQIQQLEAQVVVLEQSHSPAQLEVDAQQQQLELQQEVERLRSAQA 1936
Cdd:COG3883    181 EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGA 254
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 1486-1901 4.78e-04

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 45.17  E-value: 4.78e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1486 QELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQEESVRRSERER 1565
Cdd:pfam01576   12 EELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERS 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1566 RATLDQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLGLSDR 1645
Cdd:pfam01576   92 QQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEE 171

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1646 EAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTEALAQSSASLNSTRDK------- 1718
Cdd:pfam01576  172 EEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEElqaalar 251

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1719 -------NLHLQKALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVAD-LELQRVEAEGQLQQLREVLR 1790
Cdd:pfam01576  252 leeetaqKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDtLDTTAAQQELRSKREQEVTE 331

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1791 QRQEGEAAALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRSHEDTVRLS 1870
Cdd:pfam01576  332 LKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLE 411

                          410       420       430
                   ....*....|....*....|....*....|.
gi 1370455403 1871 AEKGRLDRTLTGAELELAEAQRQIQQLEAQV 1901
Cdd:pfam01576  412 GQLQELQARLSESERQRAELAEKLSKLQSEL 442
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 1487-1844 4.98e-04

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 45.17  E-value: 4.98e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1487 ELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQEESVRRSERERR 1566
Cdd:pfam01576  216 ESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRR 295

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1567 ATLDQVATLERSLQATESELRASQEKISKMKANETKL-----EGDKRRLKEVLDASESRTVKLELQRRSLEgELQRSRLG 1641
Cdd:pfam01576  296 DLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELkkaleEETRSHEAQLQEMRQKHTQALEELTEQLE-QAKRNKAN 374

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1642 LSDR----EAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTEALAQSSASLNSTRD 1717
Cdd:pfam01576  375 LEKAkqalESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEG 454

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1718 KNLHLQKALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQEGEA 1797
Cdd:pfam01576  455 KNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLE 534

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*..
gi 1370455403 1798 AALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKD 1844
Cdd:pfam01576  535 EDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQE 581
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 719-917 5.52e-04

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 44.44  E-value: 5.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  719 EDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERS 798
Cdd:COG3883     19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRS 98

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  799 HRQ---LEQLEGKRSVlaKELVEVREALSRATLQRDML----QAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDS 871
Cdd:COG3883     99 GGSvsyLDVLLGSESF--SDFLDRLSALSKIADADADLleelKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1370455403  872 LSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQEATVA 917
Cdd:COG3883    177 QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAA 222
PRK11281 PRK11281
mechanosensitive channel MscK;
176-391 6.22e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 44.90  E-value: 6.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  176 AQITSLPALIREIVTR--NLSQPESPVL---LPATEMASLLSLQEE--NQL--LQQELSRVEDLL--AQSRAERDELAIK 244
Cdd:PRK11281    87 QQLAQAPAKLRQAQAEleALKDDNDEETretLSTLSLRQLESRLAQtlDQLqnAQNDLAEYNSQLvsLQTQPERAQAALY 166

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  245 YNavSERLEQALRLEPGELETQEPrglvrQSVELRRQLQEEQA------SYRRKLQA--------YQ-------EGQQRQ 303
Cdd:PRK11281   167 AN--SQRLQQIRNLLKGGKVGGKA-----LRPSQRVLLQAEQAllnaqnDLQRKSLEgntqlqdlLQkqrdyltARIQRL 239

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  304 AQLVQRLQGKILQykKRCSELEQQLLE-RSGELEQQRLRDTEHSQDLESALI---RLEEEQQRSASLAQVNAMLREQLDQ 379
Cdd:PRK11281   240 EHQLQLLQEAINS--KRLTLSEKTVQEaQSQDEAARIQANPLVAQELEINLQlsqRLLKATEKLNTLTQQNLRVKNWLDR 317

                          250
                   ....*....|..
gi 1370455403  380 AGSANQALSEDI 391
Cdd:PRK11281   318 LTQSERNIKEQI 329
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
662-1203 7.59e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 44.67  E-value: 7.59e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  662 LHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRdKTDGAMQAHEDAQREVQRLRSANELLSREKSN 741
Cdd:PRK03918   240 IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSR 318

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  742 LAHSLQVAQQQ---AEELRQEREKLQAAQEELRRQRDRLEE---EQEDAVQDGARVRR-ELERSHRQLEQLEGKRSVLAK 814
Cdd:PRK03918   319 LEEEINGIEERikeLEEKEERLEELKKKLKELEKRLEELEErheLYEEAKAKKEELERlKKRLTGLTPEKLEKELEELEK 398

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  815 ELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEaslqdslsKLSALNESLAQDKlDLNRLVA 894
Cdd:PRK03918   399 AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEH--------RKELLEEYTAELK-RIEKELK 469

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  895 QLEEEKSALQGRQRQAE----QEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAqEALEQQLPTLRHERSQLQEQL 970
Cdd:PRK03918   470 EIEEKERKLRKELRELEkvlkKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEY-EKLKEKLIKLKGEIKSLKKEL 548

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  971 AQEAawrELEAERAQLQSQLQ---REQEELLARLEAE----KEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKta 1043
Cdd:PRK03918   549 EKLE---ELKKKLAELEKKLDeleEELAELLKELEELgfesVEELEERLKELEPFYNEYLELKDAEKELEREEKELKK-- 623

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1044 LSEKLMGTRHSLATISLEMER-QKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQEVRRLQEQARDLGKQRDSc 1122
Cdd:PRK03918   624 LEEELDKAFEELAETEKRLEElRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE- 702

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1123 LREAEELRTQLRLLEDARDGLrRELLEAQRKLRESQEGREVQRQE--AGELRRSLGEGAKEREALRRSNEELRSAVKKAE 1200
Cdd:PRK03918   703 LEEREKAKKELEKLEKALERV-EELREKVKKYKALLKERALSKVGeiASEIFEELTEGKYSGVRVKAEENKVKLFVVYQG 781


                   ...
gi 1370455403 1201 SER 1203
Cdd:PRK03918   782 KER 784
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1145-1347 7.79e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 44.67  E-value: 7.79e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1145 RELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEAR 1224
Cdd:PRK03918   210 NEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK 289

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1225 ------TAVGKEAGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRLG----------RELAELQGR-------LA 1281
Cdd:PRK03918   290 ekaeeyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEelkkklkeleKRLEELEERhelyeeaKA 369

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370455403 1282 LGERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEQEGEFRTRERRLLGSLEEARGTE 1347
Cdd:PRK03918   370 KKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK 435
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 657-990 8.42e-04

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 44.56  E-value: 8.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  657 LIHSALHKRQlQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRD---KTDGAMQAHEDAQREVQRLRSANE 733
Cdd:COG3096    283 LSERALELRR-ELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDhlnLVQTALRQQEKIERYQEDLEELTE 361

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  734 llsreksNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQE-------------DAVQDGARVRRELERSHR 800
Cdd:COG3096    362 -------RLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQaldvqqtraiqyqQAVQALEKARALCGLPDL 434

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  801 QLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEA--LTKAEAGRVELELSMTKLRA---EEASLQDSLSKL 875
Cdd:COG3096    435 TPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAyeLVCKIAGEVERSQAWQTAREllrRYRSQQALAQRL 514

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  876 SALNESLAqdklDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQERLEELRLEqevaRQGLEGSLRVAEQAQEALEQQ 955
Cdd:COG3096    515 QQLRAQLA----ELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQ----LEELEEQAAEAVEQRSELRQQ 586

                          330       340       350
                   ....*....|....*....|....*....|....*
gi 1370455403  956 LPTLRHERSQLQeqlAQEAAWRELEAERAQLQSQL 990
Cdd:COG3096    587 LEQLRARIKELA---ARAPAWLAAQDALERLREQS 618
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 801-1325 8.96e-04

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 44.57  E-value: 8.96e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  801 QLEQLEGKRSVLAKELVEVREALSRATLQRDMLQaEKAEVAEALTKAEAGRVELELSMTKLRAEEASLqdslsklsalne 880
Cdd:TIGR00618  213 MPDTYHERKQVLEKELKHLREALQQTQQSHAYLT-QKREAQEEQLKKQQLLKQLRARIEELRAQEAVL------------ 279

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  881 SLAQDKLDLNRLVAQLEEEKSAL-QGRQRQAEQEATVAREEQERLEELRLEQEVARQglEGSLRVAEQAQEALEQQLPTL 959
Cdd:TIGR00618  280 EETQERINRARKAAPLAAHIKAVtQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ--QSSIEEQRRLLQTLHSQEIHI 357

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  960 RHERSQLQEQLAQEAAWRELEAERAQLQSQLQ--REQEELLARLEAEKEELSEEIAAL-QQERDEGLLLAESEKQQALSL 1036
Cdd:TIGR00618  358 RDAHEVATSIREISCQQHTLTQHIHTLQQQKTtlTQKLQSLCKELDILQREQATIDTRtSAFRDLQGQLAHAKKQQELQQ 437

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1037 KESEKTALSEKLMGTRHSLATISLEMERQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHA-------------- 1102
Cdd:TIGR00618  438 RYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPcplcgscihpnpar 517

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1103 ----------QEVRRLQEQARDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELR 1172
Cdd:TIGR00618  518 qdidnpgpltRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ 597

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1173 RSLGEGAKEREALRRSN-EELRSAVKKAESERISLKLANEDKEQKLALLEEARTAVGKEAGELRTGLQEVERSRLEARRE 1251
Cdd:TIGR00618  598 DLTEKLSEAEDMLACEQhALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLAS 677

                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1370455403 1252 LQELRRQMKMLDSENTRLGRELAELQGRLALGERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEQ 1325
Cdd:TIGR00618  678 RQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQ 751
Crescentin pfam19220
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ...
 661-904 9.57e-04

Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.


Pssm-ID: 437057 [Multi-domain]  Cd Length: 401  Bit Score: 43.90  E-value: 9.57e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  661 ALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKS 740
Cdd:pfam19220    7 LLRVRLGEMADRLEDLRSLKADFSQLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELE 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  741 NLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVR 820
Cdd:pfam19220   87 ELVARLAKLEAALREAEAAKEELRIELRDKTAQAEALERQLAAETEQNRALEEENKALREEAQAAEKALQRAEGELATAR 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  821 EALSRATLQRDMLQAEKAEVAEALTKAEAgrvelelsmtKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEK 900
Cdd:pfam19220  167 ERLALLEQENRRLQALSEEQAAELAELTR----------RLAELETQLDATRARLRALEGQLAAEQAERERAEAQLEEAV 236


                   ....
gi 1370455403  901 SALQ 904
Cdd:pfam19220  237 EAHR 240
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
894-1414 1.06e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 44.14  E-value: 1.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  894 AQLEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQ- 972
Cdd:COG4913    235 DDLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERl 314

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  973 EAAWRELEAERAQLQSQLQREQEELLARLEAEKEELSEEIAALQQERDEgllLAESEKQQALSLKESEK--TALSEKLMG 1050
Cdd:COG4913    315 EARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRAR---LEALLAALGLPLPASAEefAALRAEAAA 391

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1051 TRHSLATISLEMERQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQEVRRLqeqARDLGKQRDSC-------- 1122
Cdd:COG4913    392 LLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL---AEALGLDEAELpfvgelie 468

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1123 LREAEE---------LRTQ-LRLLEDARDglRRELLEA--QRKLRESQEGREVQRQEAGELRRSLGEGA-------KERE 1183
Cdd:COG4913    469 VRPEEErwrgaiervLGGFaLTLLVPPEH--YAAALRWvnRLHLRGRLVYERVRTGLPDPERPRLDPDSlagkldfKPHP 546

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1184 ALRRSNEEL--RSAVKKAESERislKLANEDKeqklALLEEARTAVGKEAGELRTGLQEVERSRL--EARRELQELRRQM 1259
Cdd:COG4913    547 FRAWLEAELgrRFDYVCVDSPE---ELRRHPR----AITRAGQVKGNGTRHEKDDRRRIRSRYVLgfDNRAKLAALEAEL 619

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1260 KMLDSENTRLGRELAELQGRL-ALGERAEKESRRETLGLRQRLLkgeASLEVMRQELQVAQRKLQEQEGEFRTRERRLlG 1338
Cdd:COG4913    620 AELEEELAEAEERLEALEAELdALQERREALQRLAEYSWDEIDV---ASAEREIAELEAELERLDASSDDLAALEEQL-E 695

                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370455403 1339 SLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRLSAAEGRAQGLEAELARVEVQRRAAEAQLGGLRSALRRGL 1414
Cdd:COG4913    696 ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENL 771
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 719-997 1.12e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 44.17  E-value: 1.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  719 EDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQA--------AQEELRRQRDRLEEEQEDAVQDgar 790
Cdd:COG3096    832 PDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKllpqanllADETLADRLEELREELDAAQEA--- 908

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  791 vRRELERSHRQLEQLEGKRSVLAkelvevREALSRATLQRDMLQAeKAEVAEALTKAEAgrveleLSMTKLRAEEASLQD 870
Cdd:COG3096    909 -QAFIQQHGKALAQLEPLVAVLQ------SDPEQFEQLQADYLQA-KEQQRRLKQQIFA------LSEVVQRRPHFSYED 974

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  871 S---LSKLSALNESLAQdklDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEG-SLRVAE 946
Cdd:COG3096    975 AvglLGENSDLNEKLRA---RLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEElGVQADA 1051

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1370455403  947 QAQEA-------LEQQLPTLRHERSQLQEQLAQeaawreLEAERAQLQSQLQREQEEL 997
Cdd:COG3096   1052 EAEERarirrdeLHEELSQNRSRRSQLEKQLTR------CEAEMDSLQKRLRKAERDY 1103
mukB PRK04863
chromosome partition protein MukB;
757-1226 1.16e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 44.18  E-value: 1.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  757 RQEREKLQaaqEELRRQRDRLEEEQEDAvqdgARVRRELERSHRQLEQLEGKRSVLAKElvevrealsratlqrdmlqae 836
Cdd:PRK04863   781 RAAREKRI---EQLRAEREELAERYATL----SFDVQKLQRLHQAFSRFIGSHLAVAFE--------------------- 832

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  837 kAEVAEALTKAEAGRVELELSMTKLRAEEaslQDSLSKLSALNESLAQdkldLNRLVAQ---LEEEksALQGRQRQAEQE 913
Cdd:PRK04863   833 -ADPEAELRQLNRRRVELERALADHESQE---QQQRSQLEQAKEGLSA----LNRLLPRlnlLADE--TLADRVEEIREQ 902

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  914 ATVAREEQERleelrleqeVARQGlegslrvaeQAQEALEQQLPTLRHErsqlQEQLAQeaawreLEAERAQLQSQLQRE 993
Cdd:PRK04863   903 LDEAEEAKRF---------VQQHG---------NALAQLEPIVSVLQSD----PEQFEQ------LKQDYQQAQQTQRDA 954

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  994 QEELLArleaeKEELSEEIAALQQERDEGLLLAESEKQQALSLK----ESEKTALSEKLMGTRHSLAtislEMERQKRDA 1069
Cdd:PRK04863   955 KQQAFA-----LTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRleqaEQERTRAREQLRQAQAQLA----QYNQVLASL 1025

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1070 QSRQEQDRSTVNALTSELRDLRAQREEAAAAhaqevrRLQEQARDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLE 1149
Cdd:PRK04863  1026 KSSYDAKRQMLQELKQELQDLGVPADSGAEE------RARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRK 1099

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1150 AQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRR-----SNEELRSAVKKAESeriSLKLA---NEDKEQKLALLE 1221
Cdd:PRK04863  1100 LERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHRRelaylSADELRSMSDKALG---ALRLAvadNEHLRDVLRLSE 1176


                   ....*
gi 1370455403 1222 EARTA 1226
Cdd:PRK04863  1177 DPKRP 1181
KpsE COG3524
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
1730-1845 1.20e-03

Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442746 [Multi-domain]  Cd Length: 370  Bit Score: 43.30  E-value: 1.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1730 EHDRQVLQERLDAARQALSEARKQSS--SLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQEgeaaalnTVQKLQ 1807
Cdd:COG3524    183 EEEVERAEERLRDAREALLAFRNRNGilDPEATAEALLQLIATLEGQLAELEAELAALRSYLSPNSP-------QVRQLR 255

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1370455403 1808 DERRLLQERLGSLQRALAQLEAEKREVERSA--LRLEKDR 1845
Cdd:COG3524    256 RRIAALEKQIAAERARLTGASGGDSLASLLAeyERLELER 295
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
1685-1970 1.45e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 43.35  E-value: 1.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1685 AKVEESEGALRDKVRGLTEALAQSSASLNSTRDKNLHLQKALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTL 1764
Cdd:COG4372      6 EKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEEL 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1765 RGEVADLELQRVEAEGQLQQLREVLRQRQEGEAAALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKD 1844
Cdd:COG4372     86 NEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEE 165

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1845 RVALRRTLDKVEREKLRSHEDTVRLSAEKGRLDRTLTGAELELAEAQRQIQQLEAQVVVLEQSHSPAQLEVDAQQQQLEL 1924
Cdd:COG4372    166 LAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELE 245

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*.
gi 1370455403 1925 QQEVERLRSAQAQTERTLEARERAHRQRVRGLEEQVSTLKGQLQQE 1970
Cdd:COG4372    246 EDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEA 291
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
1475-1816 1.70e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 43.22  E-value: 1.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1475 EAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQ 1554
Cdd:COG4717    181 ELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLA 260

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1555 EESVRRSERERRATLDQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLkevldasESRTVKLELQRRSLEGE 1634
Cdd:COG4717    261 LLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEEL-------EEEELEELLAALGLPPD 333

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1635 LQRSRLG-LSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRgLTEALAQSSASLN 1713
Cdd:COG4717    334 LSPEELLeLLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQE-LKEELEELEEQLE 412

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1714 STRDKNLHLQKAltaceHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQR--VEAEGQLQQLREVLRQ 1791
Cdd:COG4717    413 ELLGELEELLEA-----LDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGelAELLQELEELKAELRE 487

                          330       340
                   ....*....|....*....|....*
gi 1370455403 1792 RQEGEAAALNTVQKLQDERRLLQER 1816
Cdd:COG4717    488 LAEEWAALKLALELLEEAREEYREE 512
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
656-976 1.79e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 42.97  E-value: 1.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  656 ALIHSALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELL 735
Cdd:COG4372     27 AALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESL 106

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  736 SREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEgkrsvlAKE 815
Cdd:COG4372    107 QEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALS------EAE 180

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  816 LVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQ 895
Cdd:COG4372    181 AEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEI 260

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  896 LEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQEAA 975
Cdd:COG4372    261 EELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELA 340


                   .
gi 1370455403  976 W 976
Cdd:COG4372    341 D 341
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
1123-1468 1.93e-03

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 43.27  E-value: 1.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1123 LREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESE 1202
Cdd:COG1754    137 LLRRRLVLRRLVRRLLVRLLLLRLVLLLLRLLVARRAARRRRRRRRRRARRRELERRRERARAAEAEEAAAAAAAAADAG 216

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1203 RISLKLANEDKEQKLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELRRQMKMldSENTRLGRELAELQGRLAL 1282
Cdd:COG1754    217 RAAAARDGKGGGKLAAGGAAAAAAAAAAAAAAAAALAEAAAAAAVREPPTPTTTTTAQA--ATTTTTRAAAARTTRSAQQ 294

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1283 GERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEQEGEFRTRERRLLGSLEEARGTEKQQLDHARGLELKLE 1362
Cdd:COG1754    295 AARRTRLGGEGTYTTTTTTTTTTSAAAAAAAAAAAALAAAAAAAYAPPPPYYYKKKAAAAAAAAAAAAAAAARRPPAARA 374

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1363 AARAEAAELGLRLSAAEGRAQGLEAELARVEVQRRAAEAQLGGLR----SALRRGLGLGRAPSPAPRPVPGSPARDAPAE 1438
Cdd:COG1754    375 ALLSDDRLLLELLLLRRTAAAAAAAAAATATTTAAAAAAGAGAVGtaaaGAVFFFGGFLLFAEEEDDDEEDDDDDDLPAL 454

                          330       340       350
                   ....*....|....*....|....*....|
gi 1370455403 1439 GSGEGLNSPSTLECSPGSQPPSPGPATSPA 1468
Cdd:COG1754    455 EEGLPLLKEGVLADQHFTQPPPRYTEAPLV 484
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 1464-1693 1.93e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 42.89  E-value: 1.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1464 ATSPASPDLDPEAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGR 1543
Cdd:COG3883      8 APTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREE 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1544 LSGVQAelALQEESVRRSERERRATLDQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVK 1623
Cdd:COG3883     88 LGERAR--ALYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAE 165

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1624 LELQRRSLEGELQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGA 1693
Cdd:COG3883    166 LEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
732-1048 1.97e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 42.58  E-value: 1.97e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  732 NELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSV 811
Cdd:COG4372      5 GEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEE 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  812 LAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNR 891
Cdd:COG4372     85 LNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQE 164

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  892 LVAQLEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLA 971
Cdd:COG4372    165 ELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALEL 244

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370455403  972 QEAAWRELEAERAQLQSQLQREQEELLARLEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKTALSEKL 1048
Cdd:COG4372    245 EEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAAL 321
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 1736-1901 2.02e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 41.83  E-value: 2.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1736 LQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQEgeaaALNTVQKlQDERRLLQE 1815
Cdd:COG1579     22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE----QLGNVRN-NKEYEALQK 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1816 RLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREklrshedtvrLSAEKGRLDRTLTGAELELAEAQRQIQ 1895
Cdd:COG1579     97 EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAE----------LEEKKAELDEELAELEAELEELEAERE 166


                   ....*.
gi 1370455403 1896 QLEAQV 1901
Cdd:COG1579    167 ELAAKI 172
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 204-566 2.14e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 43.12  E-value: 2.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  204 ATEMASLLSLQEENQLLQQELSRVEDLLAQSRAERDELAIKYNAVSERLEQAL-RLEPGELETQEPRGLVRQSVElrrQL 282
Cdd:TIGR02168  634 ALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIeELEEKIAELEKALAELRKELE---EL 710

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  283 QEEQASYRRKLQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLLERSGELEQQRLRDTEHSQDLESALIRLEEEQQR 362
Cdd:TIGR02168  711 EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  363 SASLAQVNAMLREQLDQAGSANQALSEDIRKVT-------NDWTRCRKELEHREAAWRREEE---SFNAYFSNEHSRLLL 432
Cdd:TIGR02168  791 IEQLKEELKALREALDELRAELTLLNEEAANLRerlesleRRIAATERRLEDLEEQIEELSEdieSLAAEIEELEELIEE 870

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  433 LWRQVVGF---RRLVSEVKMFTERDLLQLGGELARTSRAVQEAgLGLSTGLRLAESRAEAALEKQALLQAQLEEQLRDKV 509
Cdd:TIGR02168  871 LESELEALlneRASLEEALALLRSELEELSEELRELESKRSEL-RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY 949

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1370455403  510 LREKDLAQQQMQS-DLDKADLSARVTELGLAVKRLEKQNLEKDQVNKDLTEKLEALES 566
Cdd:TIGR02168  950 SLTLEEAEALENKiEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTA 1007
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1826-1976 2.23e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 43.08  E-value: 2.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1826 QLEAEKREVERSALRLEKDRVALRRTLDKVER--EKLRSHEDTVRLSAEKGRLDRTLTGAELELAEAQRQIQQLEAQVVV 1903
Cdd:COG3206    165 NLELRREEARKALEFLEEQLPELRKELEEAEAalEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAA 244

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370455403 1904 LEQSHSPAQLEVDAQQQQLELQQEVERLRSAQAQtERTLEARERAHRQRVRGLEEQVSTLKGQLQQELRRSSA 1976
Cdd:COG3206    245 LRAQLGSGPDALPELLQSPVIQQLRAQLAELEAE-LAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILA 316
COG3899 COG3899
Predicted ATPase [General function prediction only];
661-1154 2.34e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 43.31  E-value: 2.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  661 ALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSR--- 737
Cdd:COG3899    746 ALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLLLGDYEEAYEFGELALALAERlgd 825

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  738 --EKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKE 815
Cdd:COG3899    826 rrLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALA 905

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  816 LVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQ 895
Cdd:COG3899    906 AAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAA 985

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  896 LEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQEAA 975
Cdd:COG3899    986 AAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAA 1065

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  976 WRELEAERAQLQSQLQREQEELLARLEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKTALSEKLMGTRHSL 1055
Cdd:COG3899   1066 AALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAAAALLLLAAALALA 1145

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1056 ATISLEMERQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQEVRRLQEQARDLGKQRDSCLREAEELRTQLRL 1135
Cdd:COG3899   1146 LAALLLLAALLLALALLLLALAALALAAALAALAAALLAAAAAAAAAAALLAALLALAARLAALLALALLALEAAALLLL 1225

                          490
                   ....*....|....*....
gi 1370455403 1136 LEDARDGLRRELLEAQRKL 1154
Cdd:COG3899   1226 LLLAALALAAALLALRLLA 1244
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 1628-1820 2.92e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 42.73  E-value: 2.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1628 RRSLEGELQRSRLGLSDREAQAQAlqdRVDSLQRQVADSEVKagtLQLTVERLNGAlaKVEESEGALRDkvrglTEALAQ 1707
Cdd:PRK10929   185 LKALVDELELAQLSANNRQELARL---RSELAKKRSQQLDAY---LQALRNQLNSQ--RQREAERALES-----TELLAE 251

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1708 SSASLNSTRDKNLHLQKALT------ACEHDRQVLQERLDAA-----RQALSEARKQ------SSSLGE----QV----- 1761
Cdd:PRK10929   252 QSGDLPKSIVAQFKINRELSqalnqqAQRMDLIASQQRQAASqtlqvRQALNTLREQsqwlgvSNALGEalraQVarlpe 331

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1370455403 1762 ----QTLRGEVADLELQRVEAEGQLQQLREVLRQRQEGeAAALNTVQK--LQDERRLLQERLGSL 1820
Cdd:PRK10929   332 mpkpQQLDTEMAQLRVQRLRYEDLLNKQPQLRQIRQAD-GQPLTAEQNriLDAQLRTQRELLNSL 395
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 1570-1908 3.08e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 42.70  E-value: 3.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1570 DQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLGLSDREAQA 1649
Cdd:TIGR04523   96 DKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENEL 175

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1650 QALQDRVDSLQRQVADS-------EVKAGTLQLTVERLNGALAKVEEsegaLRDKVRGLTEALAQSSASLNSTRDKNLHL 1722
Cdd:TIGR04523  176 NLLEKEKLNIQKNIDKIknkllklELLLSNLKKKIQKNKSLESQISE----LKKQNNQLKDNIEKKQQEINEKTTEISNT 251

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1723 QKALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRveAEGQLQQLREVLRQRQegeaaalNT 1802
Cdd:TIGR04523  252 QTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQK--EQDWNKELKSELKNQE-------KK 322

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1803 VQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRSHEDTVRLSAEKGRLDRTLTG 1882
Cdd:TIGR04523  323 LEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQN 402

                          330       340
                   ....*....|....*....|....*.
gi 1370455403 1883 AELELAEAQRQIQQLEAQVVVLEQSH 1908
Cdd:TIGR04523  403 QEKLNQQKDEQIKKLQQEKELLEKEI 428
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
 700-1021 3.37e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 42.19  E-value: 3.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  700 LEEQLQRLRDKTDGAMQAHEDAQR----EVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRD 775
Cdd:pfam07888   32 LQNRLEECLQERAELLQAQEAANRqrekEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  776 RLEEEQE---DAVQDGARVRRELERSHRQLEQLEGKRSVlakELVEVREALSRATLQRDMLQAEKaevaealtkaEAGRV 852
Cdd:pfam07888  112 ELSEEKDallAQRAAHEARIRELEEDIKTLTQRVLERET---ELERMKERAKKAGAQRKEEEAER----------KQLQA 178

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  853 ELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEeeksalQGRQRQAEQEATVAREEQERLEELRLEQE 932
Cdd:pfam07888  179 KLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLT------TAHRKEAENEALLEELRSLQERLNASERK 252

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  933 VArqGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQEA-AWRELEAERAQLQSQLQREQEELLARLEAEKEELSEE 1011
Cdd:pfam07888  253 VE--GLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASlALREGRARWAQERETLQQSAEADKDRIEKLSAELQRL 330

                          330
                   ....*....|
gi 1370455403 1012 IAALQQERDE 1021
Cdd:pfam07888  331 EERLQEERME 340
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 653-816 3.51e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 41.06  E-value: 3.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  653 STLALIHSALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTdgamqahEDAQREVQRLRSAN 732
Cdd:COG1579     17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARI-------KKYEEQLGNVRNNK 89

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  733 EL--LSREKSNLAHSLQVAQQQAEELRQEREklqAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRS 810
Cdd:COG1579     90 EYeaLQKEIESLKRRISDLEDEILELMERIE---ELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166


                   ....*.
gi 1370455403  811 VLAKEL 816
Cdd:COG1579    167 ELAAKI 172
HEC1 COG5185
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ...
 1737-1975 3.53e-03

Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444066 [Multi-domain]  Cd Length: 594  Bit Score: 42.25  E-value: 3.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1737 QERLDAARQALSEARKQSSSLGEQVQTlRGEVADLELQRVEAEGQLQQLR---EVLRQRQEGEAAALNTVQKLQDERRLL 1813
Cdd:COG5185    274 AESSKRLNENANNLIKQFENTKEKIAE-YTKSIDIKKATESLEEQLAAAEaeqELEESKRETETGIQNLTAEIEQGQESL 352

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1814 QERLGSLQRALAQLEAEkREVERSALRLEKDRVALRRTLDKVErEKLRSHEDTVRLSAEKgrLDRTLTGAELELAEAQRQ 1893
Cdd:COG5185    353 TENLEAIKEEIENIVGE-VELSKSSEELDSFKDTIESTKESLD-EIPQNQRGYAQEILAT--LEDTLKAADRQIEELQRQ 428

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1894 IQQLEAQVVVLEQSHSPAQLEVDAQQQQLELQQEvERLRSAQAQTERTLEARERAHRQRVRGLEEQVSTLKGQLQQELRR 1973
Cdd:COG5185    429 IEQATSSNEEVSKLLNELISELNKVMREADEESQ-SRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAK 507


                   ..
gi 1370455403 1974 SS 1975
Cdd:COG5185    508 LE 509
EmrA COG1566
Multidrug resistance efflux pump EmrA [Defense mechanisms];
870-997 3.59e-03

Multidrug resistance efflux pump EmrA [Defense mechanisms];


Pssm-ID: 441174 [Multi-domain]  Cd Length: 331  Bit Score: 41.96  E-value: 3.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  870 DSLSKLSALNESLAQDKLDLNRLVAQL--EEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQ 947
Cdd:COG1566     80 DLQAALAQAEAQLAAAEAQLARLEAELgaEAEIAAAEAQLAAAQAQLDLAQRELERYQALYKKGAVSQQELDEARAALDA 159

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1370455403  948 AQEALEQqlptLRHERSQLQEQLAQEAAWRELEAERAQLQSQLQREQEEL 997
Cdd:COG1566    160 AQAQLEA----AQAQLAQAQAGLREEEELAAAQAQVAQAEAALAQAELNL 205
PRK10246 PRK10246
exonuclease subunit SbcC; Provisional
 1489-1971 3.76e-03

exonuclease subunit SbcC; Provisional


Pssm-ID: 182330 [Multi-domain]  Cd Length: 1047  Bit Score: 42.48  E-value: 3.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1489 RSAQRERDELRTQTSALNRQLAEMEAER-------------DSATSRARQLQKAVAESEEARRSVDG------RLSGVQA 1549
Cdd:PRK10246   332 HHAAKQSAELQAQQQSLNTWLAEHDRFRqwnnelagwraqfSQQTSDREQLRQWQQQLTHAEQKLNAlpaitlTLTADEV 411

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1550 ELALQEESVRRSERERRATL-DQVATLERSL-QATESELRASQEKISKMKANETKLEGDKRRLKEVLDA-----SESRTV 1622
Cdd:PRK10246   412 AAALAQHAEQRPLRQRLVALhGQIVPQQKRLaQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVkticeQEARIK 491

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1623 KLELQRRSLEGELQRSRLGLSDREA--QAQAL-----QDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALR 1695
Cdd:PRK10246   492 DLEAQRAQLQAGQPCPLCGSTSHPAveAYQALepgvnQSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLR 571

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1696 DKVRGLTEALAQSSASLNSTRDKNLHLQKALTACE-HDRQVLQerldaarqaLSEARKQSSSLGEQVQTLRGEVADLELQ 1774
Cdd:PRK10246   572 QEEQALTQQWQAVCASLNITLQPQDDIQPWLDAQEeHERQLRL---------LSQRHELQGQIAAHNQQIIQYQQQIEQR 642

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1775 RVEAEGQLQQLREVLRQrQEGEAAALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDK 1854
Cdd:PRK10246   643 QQQLLTALAGYALTLPQ-EDEEASWLATRQQEAQSWQQRQNELTALQNRIQQLTPLLETLPQSDDLPHSEETVALDNWRQ 721

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1855 VereklrsHEDTVRLSAEKGRLDRTLTGAELELAEAQRQIQQ-LEAQVVVLEQSHSPAQLEVDAQQQQLELQQEVER-LR 1932
Cdd:PRK10246   722 V-------HEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTaLQASVFDDQQAFLAALLDEETLTQLEQLKQNLENqRQ 794

                          490       500       510
                   ....*....|....*....|....*....|....*....
gi 1370455403 1933 SAQAQTERTLEARERAHRQRVRGLEEQVSTlkGQLQQEL 1971
Cdd:PRK10246   795 QAQTLVTQTAQALAQHQQHRPDGLDLTVTV--EQIQQEL 831
COG5283 COG5283
Phage-related tail protein [Mobilome: prophages, transposons];
682-782 3.78e-03

Phage-related tail protein [Mobilome: prophages, transposons];


Pssm-ID: 444094 [Multi-domain]  Cd Length: 747  Bit Score: 42.15  E-value: 3.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  682 LLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSLQVA----QQQAEELR 757
Cdd:COG5283      8 VDKPFKSALESAKQRVAALAQALKALEAPTRALARALERAKQAAARLQTKYNKLRQSLQRLRQALDQAgidtRQLSAAQR 87

                           90       100
                   ....*....|....*....|....*
gi 1370455403  758 QEREKLQAAQEELRRQRDRLEEEQE 782
Cdd:COG5283     88 RLRSSLEQTNRQLERQQQRLARLGA 112
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1475-1901 3.92e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 42.36  E-value: 3.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1475 EAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEaerdSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQ 1554
Cdd:PRK03918   296 IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE----EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKK 371

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1555 EESVRRSERERRATLDQvatLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGE 1634
Cdd:PRK03918   372 EELERLKKRLTGLTPEK---LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEE 448

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1635 -----LQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKagtlqLTVERLNGALAKVEESEGALRDKVRGLT-EALAQS 1708
Cdd:PRK03918   449 hrkelLEEYTAELKRIEKELKEIEEKERKLRKELRELEKV-----LKKESELIKLKELAEQLKELEEKLKKYNlEELEKK 523

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1709 SASLNSTRDKNLHLQKALTACEHDrqvlQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRV-EAEGQLQQLRE 1787
Cdd:PRK03918   524 AEEYEKLKEKLIKLKGEIKSLKKE----LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVeELEERLKELEP 599

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1788 VLRQrqegeaaaLNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRshEDTV 1867
Cdd:PRK03918   600 FYNE--------YLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR--EEYL 669

                          410       420       430
                   ....*....|....*....|....*....|....
gi 1370455403 1868 RLSAEKGRLDRTLTGAELELAEAQRQIQQLEAQV 1901
Cdd:PRK03918   670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEEL 703
PRK09039 PRK09039
peptidoglycan -binding protein;
1678-1786 4.13e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 41.49  E-value: 4.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1678 ERLNGALAKVEESEGALRDKVRGLTEALAQSSASLNST-----RDKNLH--LQKALTACEHDRQVLQERLDAARQALSEA 1750
Cdd:PRK09039    56 DRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAeaersRLQALLaeLAGAGAAAEGRAGELAQELDSEKQVSARA 135

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1370455403 1751 RKQSSSLGEQVQTLRGEVADLE--LQRVEAEGQLQQLR 1786
Cdd:PRK09039   136 LAQVELLNQQIAALRRQLAALEaaLDASEKRDRESQAK 173
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 946-1326 4.15e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 42.31  E-value: 4.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  946 EQAQEALEQQLPTLRHERSQLQEQLaqeaawRELEAERAQLQSQLQREQEELLARLEAEKEELSEEIAALQQERDEGLLL 1025
Cdd:TIGR04523  210 IQKNKSLESQISELKKQNNQLKDNI------EKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKI 283

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1026 AESEKQqaLSLKESEKTAL-SEKLMGTRHSLATISLEMERQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQE 1104
Cdd:TIGR04523  284 KELEKQ--LNQLKSEISDLnNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEK 361

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1105 VRRLQE---QARDLGKQRDSCLREAEELRTQLRLLEdardglrRELLEAQRKLRESQEGREVQRQEAGELRrslgegaKE 1181
Cdd:TIGR04523  362 QRELEEkqnEIEKLKKENQSYKQEIKNLESQINDLE-------SKIQNQEKLNQQKDEQIKKLQQEKELLE-------KE 427

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1182 REALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEARTAVGKEAGELRTGLQEVERsrlearrELQELRRQMKM 1261
Cdd:TIGR04523  428 IERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQK-------ELKSKEKELKK 500

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1370455403 1262 LDSENTRLGRELAELQGRLALGERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEQE 1326
Cdd:TIGR04523  501 LNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDE 565
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 206-997 4.73e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 42.26  E-value: 4.73e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  206 EMASLLSLQEENQLLQQELSRVEDLLAQSRAERDELAIKYNAVSERLEQALRLEPGELETQEprGLVRQSVELRRQLQEE 285
Cdd:TIGR00618  164 EKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLE--KELKHLREALQQTQQS 241

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  286 QASYRRKLQAYQEGQQRQaQLVQRLQGKILQYKKRCSELEQQLLERsgELEQQRLRDTEHSQdlesALIRLEEEQQRSAS 365
Cdd:TIGR00618  242 HAYLTQKREAQEEQLKKQ-QLLKQLRARIEELRAQEAVLEETQERI--NRARKAAPLAAHIK----AVTQIEQQAQRIHT 314

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  366 LAQVNAMLREQLDQAGSANQALSEDIRKVTNDWTRCRKElEHREAAWRREEESFNAYFSNEHSRL--LLLWRQVVGfrrl 443
Cdd:TIGR00618  315 ELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQ-EIHIRDAHEVATSIREISCQQHTLTqhIHTLQQQKT---- 389

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  444 vsevkmfTERDLLQLGGELARTSRAVQeaglglstGLRLAESRAEAALeKQALLQAQLEEQLRDKVLREKDLAQQQMQSD 523
Cdd:TIGR00618  390 -------TLTQKLQSLCKELDILQREQ--------ATIDTRTSAFRDL-QGQLAHAKKQQELQQRYAELCAAAITCTAQC 453

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  524 LDKADLSARvtELGLAVKRLEKQNLEKDQVNKDLTEKlEALESLRLQEQAALETEdgegLQQTLRDLAQAVLSDSESGVQ 603
Cdd:TIGR00618  454 EKLEKIHLQ--ESAQSLKEREQQLQTKEQIHLQETRK-KAVVLARLLELQEEPCP----LCGSCIHPNPARQDIDNPGPL 526

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  604 LsgsertadasngslrglsgqrtpspprrsspgrgrsprrgpSPACSDSSTLALIHSALHKRQLQVQDMRGRYEASQDLL 683
Cdd:TIGR00618  527 T-----------------------------------------RRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQM 565

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  684 GTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSLQVA---QQQAEELRQER 760
Cdd:TIGR00618  566 QEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRlhlQQCSQELALKL 645

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  761 EKLQAAQEEL--RRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKA 838
Cdd:TIGR00618  646 TALHALQLTLtqERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIEN 725

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  839 EVAEALTKAEAGRVELELSMTKLRAEEAslqdslSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQEATVAR 918
Cdd:TIGR00618  726 ASSSLGSDLAAREDALNQSLKELMHQAR------TVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTH 799

                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1370455403  919 EEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQEAAWRELEAERAQLQSQLQREQEEL 997
Cdd:TIGR00618  800 LLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1023-1260 4.87e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.67  E-value: 4.87e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1023 LLLAESEKQQALSLKESEKTALSEKLMGTRHSLAtislEMERQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHA 1102
Cdd:COG4942     11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELA----ALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELA 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1103 QEVRRLQEQARDLGKQRdsclreaEELRTQLRLLEDARDGLRRELL-------EAQRKLRESQEGREVQRQEAGELRRSL 1175
Cdd:COG4942     87 ELEKEIAELRAELEAQK-------EELAELLRALYRLGRQPPLALLlspedflDAVRRLQYLKYLAPARREQAEELRADL 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1176 GEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQEL 1255
Cdd:COG4942    160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239


                   ....*
gi 1370455403 1256 RRQMK 1260
Cdd:COG4942    240 AERTP 244
PRK12704 PRK12704
phosphodiesterase; Provisional
 719-868 5.12e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 41.69  E-value: 5.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  719 EDAQREVQRLRSANELLSREKsnlAHSLQvaQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERS 798
Cdd:PRK12704    45 EEAKKEAEAIKKEALLEAKEE---IHKLR--NEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKEL 119

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  799 HRQLEQLEGKRSVLAKELVEVREALSRATlqrdmlqaekaevaeALTKAEAGRVELELSMTKLRAEEASL 868
Cdd:PRK12704   120 EQKQQELEKKEEELEELIEEQLQELERIS---------------GLTAEEAKEILLEKVEEEARHEAAVL 174
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
892-1354 5.34e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 41.68  E-value: 5.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  892 LVAQLEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLA 971
Cdd:COG4717     47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  972 QEAAWRELEAERAQLQSQLQR-----EQEELLARLEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKTALSE 1046
Cdd:COG4717    127 LLPLYQELEALEAELAELPERleeleERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQ 206

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1047 KLMgtrhslatislEMERQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQEVR-RLQEQARDLGKQRDSCLRE 1125
Cdd:COG4717    207 RLA-----------ELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaALLALLGLGGSLLSLILTI 275

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1126 AEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERis 1205
Cdd:COG4717    276 AGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELL-- 353

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1206 LKLANEDKEQKLALLEEARTAVGKEAGelrTGLQEVERSRLEARRELQELRRQmkmldsentrlgRELAELQGRLALGER 1285
Cdd:COG4717    354 REAEELEEELQLEELEQEIAALLAEAG---VEDEEELRAALEQAEEYQELKEE------------LEELEEQLEELLGEL 418

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1286 AEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEQEGEFRTRER-RLLGSLEEARGTEKQQLDHA 1354
Cdd:COG4717    419 EELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEdGELAELLQELEELKAELREL 488
mukB PRK04863
chromosome partition protein MukB;
695-1278 5.59e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 41.87  E-value: 5.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  695 SERRALEEQLQRLRdktdgamQAHEDAQREVQRLRSANELLSReksnlahslqvAQQQAEELRQEREKLQAAQEELRRQR 774
Cdd:PRK04863   506 REQRHLAEQLQQLR-------MRLSELEQRLRQQQRAERLLAE-----------FCKRLGKNLDDEDELEQLQEELEARL 567

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  775 DRLEEEQEDAVQDGARVRRELErshrQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVEL 854
Cdd:PRK04863   568 ESLSESVSEARERRMALRQQLE----QLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLEREREL 643

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  855 ELSMTKLRAEEASLQDSLSKLSALN----ESLAQDKLDLN-RLVAQLEE--------EKSALQGRQRQA----------E 911
Cdd:PRK04863   644 TVERDELAARKQALDEEIERLSQPGgsedPRLNALAERFGgVLLSEIYDdvsledapYFSALYGPARHAivvpdlsdaaE 723

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  912 Q--------------EATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEAL------EQQLPTLRHERSQLQEQLA 971
Cdd:PRK04863   724 QlagledcpedlyliEGDPDSFDDSVFSVEELEKAVVVKIADRQWRYSRFPEVPLfgraarEKRIEQLRAEREELAERYA 803

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  972 Q-------------------------------EAAWRELEAERAQLQSQLQREQEELLaRLEAEKEELSEEIAALQQERD 1020
Cdd:PRK04863   804 TlsfdvqklqrlhqafsrfigshlavafeadpEAELRQLNRRRVELERALADHESQEQ-QQRSQLEQAKEGLSALNRLLP 882

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1021 E-GLLLAESEKQQALSLKESEKTALSEKLMGTRHSLATISLE---------------MERQKRDAQSRQEQDRSTVNALT 1084
Cdd:PRK04863   883 RlNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEpivsvlqsdpeqfeqLKQDYQQAQQTQRDAKQQAFALT 962

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1085 sELRDlraqreeaaaahaqevRRL----QEQARDLGKQRDSclreAEELRTQLRLLEDARDGLRRELLEAQRKLRES--- 1157
Cdd:PRK04863   963 -EVVQ----------------RRAhfsyEDAAEMLAKNSDL----NEKLRQRLEQAEQERTRAREQLRQAQAQLAQYnqv 1021

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1158 ----QEGREVQRQEAGELRRSLG-------EGAKEREALRRsnEELRSAVKKAESERISLklanedkEQKLALLEEARTA 1226
Cdd:PRK04863  1022 laslKSSYDAKRQMLQELKQELQdlgvpadSGAEERARARR--DELHARLSANRSRRNQL-------EKQLTFCEAEMDN 1092

                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1370455403 1227 VGKEAGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRLGRELAELQG 1278
Cdd:PRK04863  1093 LTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHRRELAYLSA 1144
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
664-849 5.68e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.54  E-value: 5.68e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  664 KRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQR--EVQRLRSANELLSREKSN 741
Cdd:COG3206    202 RQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAE 281

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  742 LahsLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELErshRQLEQLEGKRSVLAKELVEVRE 821
Cdd:COG3206    282 L---SARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQ---AQLAQLEARLAELPELEAELRR 355

                          170       180       190
                   ....*....|....*....|....*....|...
gi 1370455403  822 ALSRATLQRDMLQA-----EKAEVAEALTKAEA 849
Cdd:COG3206    356 LEREVEVARELYESllqrlEEARLAEALTVGNV 388
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 300-1041 5.74e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 41.88  E-value: 5.74e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  300 QQRQAQLVQRLQGKILQYKKRCSELEQQLLERsgELEQQRLRDTEHSQDLESALIRLEEEQQRSASLAQVNAMLREQLDQ 379
Cdd:TIGR00618  177 QYTQLALMEFAKKKSLHGKAELLTLRSQLLTL--CTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEE 254

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  380 AGSANQALSEDIRKVtndwtrcrKELEHREAAWRREEESFNayFSNEHSRLLLLWRQVVGFRRLVSEV------KMFTER 453
Cdd:TIGR00618  255 QLKKQQLLKQLRARI--------EELRAQEAVLEETQERIN--RARKAAPLAAHIKAVTQIEQQAQRIhtelqsKMRSRA 324

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  454 DLLQLGGELARTSRAVQEAGLGLSTGLRlAESRAEAALEKQALLQAQLEEQLRDkvLREKDLAQQQMQSDLDKADLSARV 533
Cdd:TIGR00618  325 KLLMKRAAHVKQQSSIEEQRRLLQTLHS-QEIHIRDAHEVATSIREISCQQHTL--TQHIHTLQQQKTTLTQKLQSLCKE 401

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  534 T-----ELGLAVKRLEKQNLEKDQVNKDLTEKLEALESLRLQEQAALETEDGEGLQQTLRDLAQAVLSDSESGVQLSGSE 608
Cdd:TIGR00618  402 LdilqrEQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQI 481

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  609 RTADASNGSLRGLSGQRTPSPPRrsspgrgrsPRRGPSPACSDSSTLALIHSALHKRQLQVQDmrgRYEASQDLLGTLRK 688
Cdd:TIGR00618  482 HLQETRKKAVVLARLLELQEEPC---------PLCGSCIHPNPARQDIDNPGPLTRRMQRGEQ---TYAQLETSEEDVYH 549

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  689 QLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREksnlahslqvAQQQAEELRQEREKLQAAQE 768
Cdd:TIGR00618  550 QLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDL----------TEKLSEAEDMLACEQHALLR 619

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  769 ELRRQRDRLEEEQEDavqdgarvRRELERSHRQLEQLEGKRSVLAKELVEVREALSRatlqrdMLQAEKAEVAEALTKAE 848
Cdd:TIGR00618  620 KLQPEQDLQDVRLHL--------QQCSQELALKLTALHALQLTLTQERVREHALSIR------VLPKELLASRQLALQKM 685

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  849 AGRVE-LELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQERLEEL 927
Cdd:TIGR00618  686 QSEKEqLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFN 765

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  928 RLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQEAawRELEAERAQLQSQLQREQEELLARLEAEKEE 1007
Cdd:TIGR00618  766 NNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEI--PSDEDILNLQCETLVQEEEQFLSRLEEKSAT 843

                          730       740       750
                   ....*....|....*....|....*....|....
gi 1370455403 1008 LSEEIAALQQERDEGLLLAESEKQQALSLKESEK 1041
Cdd:TIGR00618  844 LGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDK 877
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
 242-1089 6.45e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 41.57  E-value: 6.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  242 AIKYNAVSERLEQALRLEPGELETQEprglvrQSVELRRQLQEEQASYRRKLQAYQEGQQRQAQLVQRLQGKILQYKKRC 321
Cdd:TIGR00606  181 ATRYIKALETLRQVRQTQGQKVQEHQ------MELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRL 254

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  322 SELEQQlleRSGELEQQRLRDTEHSQDLESALIRLEEEQQRSASLAQVNAMLREQLDQAGSanqalseDIRKVTNDWTRC 401
Cdd:TIGR00606  255 KEIEHN---LSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQR-------TVREKERELVDC 324

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  402 RKELEHREAAwRREEESFNAYFSNEHSRLLL----LWRQVVGFRRLVSEVKMFTERDLLQLGGELAR-TSRAVQEAGLGL 476
Cdd:TIGR00606  325 QRELEKLNKE-RRLLNQEKTELLVEQGRLQLqadrHQEHIRARDSLIQSLATRLELDGFERGPFSERqIKNFHTLVIERQ 403

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  477 STGLRLAESRAEAALEKQALLQAQLEEqLRDKVLREKDLAQqqmqsdLDKADLSARVTELGLAVKRLEKQNLEKDQVNKD 556
Cdd:TIGR00606  404 EDEAKTAAQLCADLQSKERLKQEQADE-IRDEKKGLGRTIE------LKKEILEKKQEELKFVIKELQQLEGSSDRILEL 476

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  557 LTEKLEALESL-RLQEQAALETEDGE--GLQQTLRDLAQAVLSDSESGVQLsgsERTADASNGSLRGLSGQRTPSPPRRS 633
Cdd:TIGR00606  477 DQELRKAERELsKAEKNSLTETLKKEvkSLQNEKADLDRKLRKLDQEMEQL---NHHTTTRTQMEMLTKDKMDKDEQIRK 553

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  634 SPGRGRSPRRGPSPACSDSSTLAlihSALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDG 713
Cdd:TIGR00606  554 IKSRHSDELTSLLGYFPNKKQLE---DWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFD 630

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  714 AMQAhEDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQER-------EKLQAAQEELRRQRDRLEEEQEDAVQ 786
Cdd:TIGR00606  631 VCGS-QDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENqsccpvcQRVFQTEAELQEFISDLQSKLRLAPD 709

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  787 DGARVRRELERSHRQLEQLEGKRSVLA-------KELVEVREALSRatLQRDMlQAEKAEVAEALTKAEAGRVELELS-- 857
Cdd:TIGR00606  710 KLKSTESELKKKEKRRDEMLGLAPGRQsiidlkeKEIPELRNKLQK--VNRDI-QRLKNDIEEQETLLGTIMPEEESAkv 786

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  858 ----MTKLRAEEASLQDSLSKLSALNESLaqDKLDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEV 933
Cdd:TIGR00606  787 cltdVTIMERFQMELKDVERKIAQQAAKL--QGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKS 864

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  934 ARQGLEG---SLRVAEQAQEALEQQLPTLRHERSQLQEQLAQEaawRELEAERAQLQSQLQREQEELLARLEAEKEELSE 1010
Cdd:TIGR00606  865 KTNELKSeklQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDA---KEQDSPLETFLEKDQQEKEELISSKETSNKKAQD 941

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1011 EIAALQQERDEGLLLAES-------EKQQALSLKESEKTALSEKLMGTRHSLATISLEMERQKRDAQSRQEQDRSTVNAL 1083
Cdd:TIGR00606  942 KVNDIKEKVKNIHGYMKDienkiqdGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNL 1021


                   ....*.
gi 1370455403 1084 TSELRD 1089
Cdd:TIGR00606 1022 TLRKRE 1027
Filament pfam00038
Intermediate filament protein;
1569-1830 6.68e-03

Intermediate filament protein;


Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 40.67  E-value: 6.68e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1569 LDQVATLERSLQATESELRASQEKIS-KMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLGLSDREA 1647
Cdd:pfam00038   17 IDKVRFLEQQNKLLETKISELRQKKGaEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNLRLAAEDFRQKYEDELN 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1648 QAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALA---KVEESEgalrdkVRGLTEALAQSSASLNSTRDKNLHLQK 1724
Cdd:pfam00038   97 LRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAflkKNHEEE------VRELQAQVSDTQVNVEMDAARKLDLTS 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1725 AL--TACEHDRQVLQERLDAA---RQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLRevlRQRQEGEAAA 1799
Cdd:pfam00038  171 ALaeIRAQYEEIAAKNREEAEewyQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLK---KQKASLERQL 247

                          250       260       270
                   ....*....|....*....|....*....|.
gi 1370455403 1800 LNTVQKLQDERRLLQERLGSLQRALAQLEAE 1830
Cdd:pfam00038  248 AETEERYELQLADYQELISELEAELQETRQE 278
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1736-1933 6.96e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.54  E-value: 6.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1736 LQERLDAARQALSEARKQSS--SLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQEGEAAALNTVQKLQDerrll 1813
Cdd:COG3206    187 LRKELEEAEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQ----- 261

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1814 QERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRshedtvrlsaekgRLDRTLTGAELELAEAQRQ 1893
Cdd:COG3206    262 SPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQ-------------EAQRILASLEAELEALQAR 328

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 1370455403 1894 IQQLEAQVVVLEQShspAQLEVDAQQQQLELQQEVERLRS 1933
Cdd:COG3206    329 EASLQAQLAQLEAR---LAELPELEAELRRLEREVEVARE 365
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1145-1809 7.51e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 41.20  E-value: 7.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1145 RELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEAR 1224
Cdd:PRK03918   165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE 244

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1225 TAVGKEAGELRT---GLQEVERSRLEARRELQELRRQMKmldsentrlgrELAELQGRLALGERAEKESRRetlgLRQRL 1301
Cdd:PRK03918   245 KELESLEGSKRKleeKIRELEERIEELKKEIEELEEKVK-----------ELKELKEKAEEYIKLSEFYEE----YLDEL 309

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1302 LKGEASLEVMRQELQVAQRKLQEQE------GEFRTRERRLLGSLEEARGTE------KQQLDHARGLELKLEAARAEAa 1369
Cdd:PRK03918   310 REIEKRLSRLEEEINGIEERIKELEekeerlEELKKKLKELEKRLEELEERHelyeeaKAKKEELERLKKRLTGLTPEK- 388

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1370 eLGLRLSAAEGRAQGLEAELARVEVQRRAAEAQLGGLRSALRRglgLGRAPSPAPrpVPGSPardapaegsgeglnspst 1449
Cdd:PRK03918   389 -LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE---LKKAKGKCP--VCGRE------------------ 444

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1450 lecspgsqppspgpatspaspdLDPEAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAE--RDSATSRARQLQ 1527
Cdd:PRK03918   445 ----------------------LTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVlkKESELIKLKELA 502

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1528 KAVAESEEarrsvdgRLSGVQAElalqeeSVRRSERERRATLDQVATLERSLQATESELRASQEKISKMKANETKLEGDK 1607
Cdd:PRK03918   503 EQLKELEE-------KLKKYNLE------ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELE 569

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1608 RRLKEVLDASESRTVK----LELQRRSLEgELQRSRLGLSDREAQAQALQDRVDSLQRQVADSEvkagtlqltvERLNGA 1683
Cdd:PRK03918   570 EELAELLKELEELGFEsveeLEERLKELE-PFYNEYLELKDAEKELEREEKELKKLEEELDKAF----------EELAET 638

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1684 LAKVEESEGALRDKVRGLTEalaqssASLNSTRDKNLHLQKALTAcehdrqvLQERLDAARQALSEARKQSSSLGEQVQT 1763
Cdd:PRK03918   639 EKRLEELRKELEELEKKYSE------EEYEELREEYLELSRELAG-------LRAELEELEKRREEIKKTLEKLKEELEE 705

                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....*...
gi 1370455403 1764 LrgEVADLELQRVE-AEGQLQQLRE-VLRQRQEGEAAALNTVQKLQDE 1809
Cdd:PRK03918   706 R--EKAKKELEKLEkALERVEELREkVKKYKALLKERALSKVGEIASE 751
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
218-393 7.52e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.44  E-value: 7.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  218 QLLQQELSRVEDLLAQSRAERDELAIKYNAVSERLEQALRLEPGELETQEPRGLVRQSVELRRQLQEEQASYRRKLQAYQ 297
Cdd:COG4913    613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEE 692

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  298 EGQQRQAQLvQRLQGKILQYKKRCSELEQQLLERSGELEQQRLRDTEHSQDLESALIRLEEEQQRSASLAQVNAMLREQL 377
Cdd:COG4913    693 QLEELEAEL-EELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENL 771

                          170
                   ....*....|....*.
gi 1370455403  378 DQAGSANQALSEDIRK 393
Cdd:COG4913    772 EERIDALRARLNRAEE 787
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
 678-917 8.81e-03

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 467957 [Multi-domain]  Cd Length: 1848  Bit Score: 41.36  E-value: 8.81e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  678 ASQDLLGTLRKQLSDSESERRALEEQlqrlrdktdgaMQAHEDAQRevqrlrsanelLSREKSNLAHSLQVAQQQAEELR 757
Cdd:NF012221  1539 ESSQQADAVSKHAKQDDAAQNALADK-----------ERAEADRQR-----------LEQEKQQQLAAISGSQSQLESTD 1596

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  758 QereklQAAQEELRRQRDRLEEEQEDavqdgarVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRdmlqaek 837
Cdd:NF012221  1597 Q-----NALETNGQAQRDAILEESRA-------VTKELTTLAQGLDALDSQATYAGESGDQWRNPFAGGLLDR------- 1657

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403  838 aeVAEAL--TKAEAGrVELELSMTKLRAEEASLQDSLSKLSAlneslAQDKLDLNRLVAQLEEEKSALQGRQRQAE---- 911
Cdd:NF012221  1658 --VQEQLddAKKISG-KQLADAKQRHVDNQQKVKDAVAKSEA-----GVAQGEQNQANAEQDIDDAKADAEKRKDDalak 1729


                   ....*..
gi 1370455403  912 -QEATVA 917
Cdd:NF012221  1730 qNEAQQA 1736
PLN03086 PLN03086
PRLI-interacting factor K; Provisional
 755-801 8.86e-03

PRLI-interacting factor K; Provisional


Pssm-ID: 178635 [Multi-domain]  Cd Length: 567  Bit Score: 41.01  E-value: 8.86e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1370455403  755 ELRQEREKLQAAQEElRRQRDRLEEEQEDAVQDGARVRRE-LERSHRQ 801
Cdd:PLN03086     4 ELRRAREKLEREQRE-RKQRAKLKLERERKAKEEAAKQREaIEAAQRS 50
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1627-1835 9.05e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.16  E-value: 9.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1627 QRRSLEGELQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTvERLNGALAKVEESEGALRDkvrgLTEALA 1706
Cdd:COG3206    162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLS-EEAKLLLQQLSELESQLAE----ARAELA 236

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370455403 1707 QSSASLNSTRDKNLHLQKALTACEHDRQV--LQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRveaegqLQQ 1784
Cdd:COG3206    237 EAEARLAALRAQLGSGPDALPELLQSPVIqqLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQL------QQE 310

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1370455403 1785 LREVLRQRQEGEAAALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVE 1835
Cdd:COG3206    311 AQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVE 361
PLN02316 PLN02316
synthase/transferase
 753-816 9.68e-03

synthase/transferase


Pssm-ID: 215180 [Multi-domain]  Cd Length: 1036  Bit Score: 41.01  E-value: 9.68e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370455403  753 AEELRQEREKLQAAQEELRRQRD---RLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKEL 816
Cdd:PLN02316   251 LEEKRRELEKLAKEEAERERQAEeqrRREEEKAAMEADRAQAKAEVEKRREKLQNLLKKASRSADNV 317
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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