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Conserved domains on  [gi|767977527|ref|XP_011533324|]
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microtubule-associated tumor suppressor candidate 2 isoform X5 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SbcC super family cl33865
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
272-535 1.05e-11

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


The actual alignment was detected with superfamily member COG0419:

Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 67.86  E-value: 1.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 272 AKCEKLQKEKEELERRFEDEVKRLgwqqQAELQELEERLQLQFEAEMARLQEEHgdQLLSIRCQHQEQVEDLTASHDAAL 351
Cdd:COG0419  185 AKIEELEGQLSELLEDIEDLLEAL----EEELKELKKLEEIQEEQEEEELEQEI--EALEERLAELEEEKERLEELKARL 258
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 352 LEMENNHTVAITILQDDHDHKVQELMSTHELEK--KELEENFEKLRLSLQDQVDTLTFQsQSLRDRARRFEEALRKNTE- 428
Cdd:COG0419  259 LEIESLELEALKIREEELRELERLLEELEEKIErlEELEREIEELEEELEGLRALLEEL-EELLEKLKSLEERLEKLEEk 337
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 429 -EQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKilELEKLAEKNIILEEKIQVLQQQNEDLKARIDQNTVVTRQL 507
Cdd:COG0419  338 lEKLESELEELAEEKNELAKLLEERLKELEERLEELEK--ELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEEL 415
                        250       260
                 ....*....|....*....|....*...
gi 767977527 508 SEENANLQEYVEKETQEKKRLSRTNEEL 535
Cdd:COG0419  416 EKELEELERELEELEEEIKKLEEQINQL 443
PHA03381 super family cl31824
tegument protein VP22; Provisional
37-182 1.64e-04

tegument protein VP22; Provisional


The actual alignment was detected with superfamily member PHA03381:

Pssm-ID: 177618 [Multi-domain]  Cd Length: 290  Bit Score: 43.85  E-value: 1.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  37 PQSPAPSPGTVHSQSRAG--QPPEFHLNGTMQYVVSFVWHLSLMLLrlICLVAGSTFGNEEQPVLKASLPSKDTP----K 110
Cdd:PHA03381  25 FISPDASPARVSFEEPADraRRGAGQARGRSQAERRFHHYDEARAD--YPYYTGSSSEDERPADPRPSRRPHAQPeasgP 102
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 111 GAGRVAPPASSSVTAPRRSLLPAPKSTSTPAG-----TKKDAQKDQDT--NKPAVSSPKRV---AASTTKLHSPGYPKQR 180
Cdd:PHA03381 103 GPARGARGPAGSRGRGRRAESPSPRDPPNPKGasaprGRKSACADSAAllDAPAPAAPKRQktpAGLARKLHFSTAPTSP 182

                 ..
gi 767977527 181 TA 182
Cdd:PHA03381 183 TA 184
 
Name Accession Description Interval E-value
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
272-535 1.05e-11

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 67.86  E-value: 1.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 272 AKCEKLQKEKEELERRFEDEVKRLgwqqQAELQELEERLQLQFEAEMARLQEEHgdQLLSIRCQHQEQVEDLTASHDAAL 351
Cdd:COG0419  185 AKIEELEGQLSELLEDIEDLLEAL----EEELKELKKLEEIQEEQEEEELEQEI--EALEERLAELEEEKERLEELKARL 258
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 352 LEMENNHTVAITILQDDHDHKVQELMSTHELEK--KELEENFEKLRLSLQDQVDTLTFQsQSLRDRARRFEEALRKNTE- 428
Cdd:COG0419  259 LEIESLELEALKIREEELRELERLLEELEEKIErlEELEREIEELEEELEGLRALLEEL-EELLEKLKSLEERLEKLEEk 337
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 429 -EQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKilELEKLAEKNIILEEKIQVLQQQNEDLKARIDQNTVVTRQL 507
Cdd:COG0419  338 lEKLESELEELAEEKNELAKLLEERLKELEERLEELEK--ELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEEL 415
                        250       260
                 ....*....|....*....|....*...
gi 767977527 508 SEENANLQEYVEKETQEKKRLSRTNEEL 535
Cdd:COG0419  416 EKELEELERELEELEEEIKKLEEQINQL 443
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
196-529 8.22e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 65.08  E-value: 8.22e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   196 AREAERQLV-LRLKERCEQQTRQLGVAQGELKRAicgfdaLAVATQHFFRKN-ESALVKEKELSIELANIRDEVAFHTAK 273
Cdd:TIGR02168  195 LNELERQLKsLERQAEKAERYKELKAELRELELA------LLVLRLEELREElEELQEELKEAEEELEELTAELQELEEK 268
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   274 CEKLQKEKEELERRFEDEVKRLGwQQQAELQELEERLQLQfEAEMARLQ---EEHGDQLLSIRCQHQEQVEDLTAShDAA 350
Cdd:TIGR02168  269 LEELRLEVSELEEEIEELQKELY-ALANEISRLEQQKQIL-RERLANLErqlEELEAQLEELESKLDELAEELAEL-EEK 345
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   351 LLEMENNHTVaitiLQDDHD--HKVQELMSTHELEKKELEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTE 428
Cdd:TIGR02168  346 LEELKEELES----LEAELEelEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   429 EQLEIALAPYQH-LEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDLKARIDqntvVTRQL 507
Cdd:TIGR02168  422 EIEELLKKLEEAeLKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD----SLERL 497
                          330       340
                   ....*....|....*....|..
gi 767977527   508 SEENANLQEYVEKETQEKKRLS 529
Cdd:TIGR02168  498 QENLEGFSEGVKALLKNQSGLS 519
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
269-534 1.31e-08

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 57.83  E-value: 1.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  269 FHTAKCEKLQKEKEELERRFE--------DEVKRLGWQQQAELQELEERLQLQFEAEMARLQEEHGDQLLSiRCQHQEQV 340
Cdd:pfam17380 293 FEKMEQERLRQEKEEKAREVErrrkleeaEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELE-RIRQEEIA 371
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  341 EDLTASHDAALLEMENNHTVAITILQDDHDHKVQELMSTHELEKKELEENFEKLRlslQDQVDTLTFQSQSLRD-RARRF 419
Cdd:pfam17380 372 MEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIR---AEQEEARQREVRRLEEeRAREM 448
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  420 EEALRKNTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQ-IHEQEKKILELEKLAEKNIILEE--KIQVLQQQNEDLKA- 495
Cdd:pfam17380 449 ERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKrAEEQRRKILEKELEERKQAMIEEerKRKLLEKEMEERQKa 528
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 767977527  496 -------RIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNEE 534
Cdd:pfam17380 529 iyeeerrREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERE 574
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
254-533 1.17e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 45.05  E-value: 1.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 254 KELSIELANIRDEVAFHTAKCEKLQKEKEELERRFEDEVKRLGWQQQAE-LQELEERLqlqfeaemarlqEEHGDQLLSI 332
Cdd:PRK03918 455 EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEqLKELEEKL------------KKYNLEELEK 522
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 333 RCQHQEQVEDLtashdaaLLEMENNhtvaITILQDDHDhKVQELMStHELEKKELEENFEKLRLSLQDQVDTLTFQS-QS 411
Cdd:PRK03918 523 KAEEYEKLKEK-------LIKLKGE----IKSLKKELE-KLEELKK-KLAELEKKLDELEEELAELLKELEELGFESvEE 589
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 412 LRDRARRFEEALR-----KNTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILEL---------EKLAEKNI 477
Cdd:PRK03918 590 LEERLKELEPFYNeylelKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELekkyseeeyEELREEYL 669
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 767977527 478 ILEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNE 533
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725
PHA03381 PHA03381
tegument protein VP22; Provisional
37-182 1.64e-04

tegument protein VP22; Provisional


Pssm-ID: 177618 [Multi-domain]  Cd Length: 290  Bit Score: 43.85  E-value: 1.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  37 PQSPAPSPGTVHSQSRAG--QPPEFHLNGTMQYVVSFVWHLSLMLLrlICLVAGSTFGNEEQPVLKASLPSKDTP----K 110
Cdd:PHA03381  25 FISPDASPARVSFEEPADraRRGAGQARGRSQAERRFHHYDEARAD--YPYYTGSSSEDERPADPRPSRRPHAQPeasgP 102
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 111 GAGRVAPPASSSVTAPRRSLLPAPKSTSTPAG-----TKKDAQKDQDT--NKPAVSSPKRV---AASTTKLHSPGYPKQR 180
Cdd:PHA03381 103 GPARGARGPAGSRGRGRRAESPSPRDPPNPKGasaprGRKSACADSAAllDAPAPAAPKRQktpAGLARKLHFSTAPTSP 182

                 ..
gi 767977527 181 TA 182
Cdd:PHA03381 183 TA 184
 
Name Accession Description Interval E-value
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
272-535 1.05e-11

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 67.86  E-value: 1.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 272 AKCEKLQKEKEELERRFEDEVKRLgwqqQAELQELEERLQLQFEAEMARLQEEHgdQLLSIRCQHQEQVEDLTASHDAAL 351
Cdd:COG0419  185 AKIEELEGQLSELLEDIEDLLEAL----EEELKELKKLEEIQEEQEEEELEQEI--EALEERLAELEEEKERLEELKARL 258
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 352 LEMENNHTVAITILQDDHDHKVQELMSTHELEK--KELEENFEKLRLSLQDQVDTLTFQsQSLRDRARRFEEALRKNTE- 428
Cdd:COG0419  259 LEIESLELEALKIREEELRELERLLEELEEKIErlEELEREIEELEEELEGLRALLEEL-EELLEKLKSLEERLEKLEEk 337
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 429 -EQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKilELEKLAEKNIILEEKIQVLQQQNEDLKARIDQNTVVTRQL 507
Cdd:COG0419  338 lEKLESELEELAEEKNELAKLLEERLKELEERLEELEK--ELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEEL 415
                        250       260
                 ....*....|....*....|....*...
gi 767977527 508 SEENANLQEYVEKETQEKKRLSRTNEEL 535
Cdd:COG0419  416 EKELEELERELEELEEEIKKLEEQINQL 443
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
196-529 8.22e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 65.08  E-value: 8.22e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   196 AREAERQLV-LRLKERCEQQTRQLGVAQGELKRAicgfdaLAVATQHFFRKN-ESALVKEKELSIELANIRDEVAFHTAK 273
Cdd:TIGR02168  195 LNELERQLKsLERQAEKAERYKELKAELRELELA------LLVLRLEELREElEELQEELKEAEEELEELTAELQELEEK 268
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   274 CEKLQKEKEELERRFEDEVKRLGwQQQAELQELEERLQLQfEAEMARLQ---EEHGDQLLSIRCQHQEQVEDLTAShDAA 350
Cdd:TIGR02168  269 LEELRLEVSELEEEIEELQKELY-ALANEISRLEQQKQIL-RERLANLErqlEELEAQLEELESKLDELAEELAEL-EEK 345
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   351 LLEMENNHTVaitiLQDDHD--HKVQELMSTHELEKKELEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTE 428
Cdd:TIGR02168  346 LEELKEELES----LEAELEelEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   429 EQLEIALAPYQH-LEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDLKARIDqntvVTRQL 507
Cdd:TIGR02168  422 EIEELLKKLEEAeLKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD----SLERL 497
                          330       340
                   ....*....|....*....|..
gi 767977527   508 SEENANLQEYVEKETQEKKRLS 529
Cdd:TIGR02168  498 QENLEGFSEGVKALLKNQSGLS 519
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
244-544 6.58e-10

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 62.04  E-value: 6.58e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  244 RKNESALVKEKELSIELANIRDEVAFHTAKCEKLQKEKEELERRfEDEVKRLGWQQQAELQELEERLQlQFEAEMARLQE 323
Cdd:COG1196   660 RSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDL-LEELRRQLEELERQLEELKRELA-ALEEELEQLQS 737
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  324 EHGDQLLSIRcQHQEQVEDLtashDAALLEMENNHTVAITILQDDHDhKVQELmSTHELEKKELEENFEKLRLSLQDQVD 403
Cdd:COG1196   738 RLEELEEELE-ELEEELEEL----QERLEELEEELESLEEALAKLKE-EIEEL-EEKRQALQEELEELEEELEEAERRLD 810
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  404 TLTFQSQSLRDRARRFEEALRKNTEEQLEIALApYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKniiLEEKI 483
Cdd:COG1196   811 ALERELESLEQRRERLEQEIEELEEEIEELEEK-LDELEEELEELEKELEELKEELEELEAEKEELEDELKE---LEEEK 886
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767977527  484 QVLQQQNEDLKARIDqntvvtrQLSEENANLQEYVEKETQEKKRLSRTNEELLWKLQTGDP 544
Cdd:COG1196   887 EELEEELRELESELA-------ELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYE 940
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
252-535 6.69e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 62.00  E-value: 6.69e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   252 KEKELSIELANIRDEVAFHTAKCEKLQKEKEELERRFEDEVKRLGWQQQAELQELEERLQLQFEAEMARLQEEHGDQLLS 331
Cdd:TIGR02168  692 KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   332 IRCQHQEQVEDLTASHDAALLEMENNHTV---AITILQDDHD------HKVQELMSTHELEKKELEENFEKLRLSLQDQV 402
Cdd:TIGR02168  772 EAEEELAEAEAEIEELEAQIEQLKEELKAlreALDELRAELTllneeaANLRERLESLERRIAATERRLEDLEEQIEELS 851
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   403 DTLTFQSQSLRDrarrfEEALRKNTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELE----KLAEKNII 478
Cdd:TIGR02168  852 EDIESLAAEIEE-----LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRreleELREKLAQ 926
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 767977527   479 LEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEK-KRLSRTNEEL 535
Cdd:TIGR02168  927 LELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRlKRLENKIKEL 984
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
254-527 2.96e-09

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 60.11  E-value: 2.96e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  254 KELSIELANIRDEVAFHTAKCEKLQKEKEELERRfEDEVKRLGWQQQAELQELEERLQLQfEAEMARLQEEHgDQLLSIR 333
Cdd:COG1196   684 EKLEEELKSLKNELRSLEDLLEELRRQLEELERQ-LEELKRELAALEEELEQLQSRLEEL-EEELEELEEEL-EELQERL 760
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  334 CQHQEQVEDLtaSHDAALLEMENNHTVAITILQDDHDHKVQELMSTHELEKKELEENFEKLRL----------SLQDQVD 403
Cdd:COG1196   761 EELEEELESL--EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQrrerleqeieELEEEIE 838
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  404 TLTFQSQSLRDRARRFEEALRkNTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELE-KLAEKNIILEEK 482
Cdd:COG1196   839 ELEEKLDELEEELEELEKELE-ELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKeEIEKLRERLEEL 917
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 767977527  483 IQVLQQQNEDLKARIDQNTvvtrqlSEENANLQEYVEKETQEKKR 527
Cdd:COG1196   918 EAKLERLEVELPELEEELE------EEYEDTLETELEREIERLEE 956
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
195-499 4.34e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 59.69  E-value: 4.34e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   195 QAREAERQLVLRLKERCEQQTRQLGVAQGELKRAICGFDALAVATQHFFRKNESALVKEKELSIELANIRDEVAFHTAKC 274
Cdd:TIGR02168  705 KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   275 EKLQKEKEELERRFEDEVKRLGwQQQAELQELEERLQlQFEAEMARLQEEHGDQLLSIRcQHQEQVEDLTASHDAALLEM 354
Cdd:TIGR02168  785 EELEAQIEQLKEELKALREALD-ELRAELTLLNEEAA-NLRERLESLERRIAATERRLE-DLEEQIEELSEDIESLAAEI 861
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   355 ENnHTVAITILQDDHDHKVQELMSThelekkeleenfEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQLEIA 434
Cdd:TIGR02168  862 EE-LEELIEELESELEALLNERASL------------EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLE 928
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767977527   435 LApyqhleedmkslKQVLEMKNQQIHEQ--EKKILELEKLAEKNIILEEKIQVLQQQNEDLKARIDQ 499
Cdd:TIGR02168  929 LR------------LEGLEVRIDNLQERlsEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
269-534 1.31e-08

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 57.83  E-value: 1.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  269 FHTAKCEKLQKEKEELERRFE--------DEVKRLGWQQQAELQELEERLQLQFEAEMARLQEEHGDQLLSiRCQHQEQV 340
Cdd:pfam17380 293 FEKMEQERLRQEKEEKAREVErrrkleeaEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELE-RIRQEEIA 371
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  341 EDLTASHDAALLEMENNHTVAITILQDDHDHKVQELMSTHELEKKELEENFEKLRlslQDQVDTLTFQSQSLRD-RARRF 419
Cdd:pfam17380 372 MEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIR---AEQEEARQREVRRLEEeRAREM 448
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  420 EEALRKNTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQ-IHEQEKKILELEKLAEKNIILEE--KIQVLQQQNEDLKA- 495
Cdd:pfam17380 449 ERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKrAEEQRRKILEKELEERKQAMIEEerKRKLLEKEMEERQKa 528
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 767977527  496 -------RIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNEE 534
Cdd:pfam17380 529 iyeeerrREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERE 574
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
244-539 1.35e-07

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 54.72  E-value: 1.35e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  244 RKNESALVKEKELSIELANIRDEVAFHTAKCEKLQKEKEELER--RFEDEVKRL-GWQQQAELQELEERLQlQFEAEMAR 320
Cdd:COG1196   172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERyqELKAELRELeLALLLAKLKELRKELE-ELEEELSR 250
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  321 LQEEHGDqllsircqHQEQVEDLTASHDAALLEMENnhtvaitilqddhdhkvqelMSTHELEKKELEENFEKLRLSLQD 400
Cdd:COG1196   251 LEEELEE--------LQEELEEAEKEIEELKSELEE--------------------LREELEELQEELLELKEEIEELEG 302
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  401 QVDTLTFQSQSLRDRARRFEEALRK------NTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILEL-EKLA 473
Cdd:COG1196   303 EISLLRERLEELENELEELEERLEElkekieALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELfEALR 382
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767977527  474 EKNIILEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNEELLWKL 539
Cdd:COG1196   383 EELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEEL 448
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
255-535 3.75e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 53.14  E-value: 3.75e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   255 ELSIELANIRDEVAFHTAKCEKLQKEKEELERrfedevkrlgwqqqaELQELEERL-QLQFEAEMARLQEEHGDQLLSIR 333
Cdd:TIGR02168  674 ERRREIEELEEKIEELEEKIAELEKALAELRK---------------ELEELEEELeQLRKELEELSRQISALRKDLARL 738
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   334 CQHQEQVEDLTASHDAALLEMENNHTVAITILQDDHDHKVQElmsthelekkeleenfEKLRLSLQDQVDTLTFQSQSLR 413
Cdd:TIGR02168  739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA----------------EAEIEELEAQIEQLKEELKALR 802
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   414 DRARRFEEALRkNTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDL 493
Cdd:TIGR02168  803 EALDELRAELT-LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE 881
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 767977527   494 KARIDQNTVVTRQLSEENANLQEYVEKETQEKKR-LSRTNEEL 535
Cdd:TIGR02168  882 RASLEEALALLRSELEELSEELRELESKRSELRReLEELREKL 924
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
197-499 9.93e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 51.99  E-value: 9.93e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   197 REAERQLVLRLKERCEQQTRQLGVAQGELKRAICGFDALAVATQHFFRKNESALVKEKElsiELANIRDEVAFHTAKCEK 276
Cdd:TIGR02169  700 IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS---ELKELEARIEELEEDLHK 776
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   277 LQKEKEELERRFEDEvkrlGWQQ-QAELQELEE---RLQLQFEAEMARLQEEHGD-QLLSIRCQH-QEQVEDLTASHDAA 350
Cdd:TIGR02169  777 LEEALNDLEARLSHS----RIPEiQAELSKLEEevsRIEARLREIEQKLNRLTLEkEYLEKEIQElQEQRIDLKEQIKSI 852
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   351 LLEMENNHTVAITILQ--DDHDHKVQELMSTHELEKKELEENFEKLRlSLQDQVDTLTFQSQSLRDRARRFEEALRKNTE 428
Cdd:TIGR02169  853 EKEIENLNGKKEELEEelEELEAALRDLESRLGDLKKERDELEAQLR-ELERKIEELEAQIEKKRKRLSELKAKLEALEE 931
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   429 EQLEIALAPYQHLEE-----DMKSLKQVLEMKNQQIHEQE----KKILELEKLAEKNIILEEKIQVLQQQNEDLKARIDQ 499
Cdd:TIGR02169  932 ELSEIEDPKGEDEEIpeeelSLEDVQAELQRVEEEIRALEpvnmLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEE 1011
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
197-497 1.54e-06

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 51.25  E-value: 1.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  197 REAERQLVLRlkeRCEQQTRQLGVAQGELKRAICGFDALAVATQHFFRKNESALVKEKELSIELANIRDEVAFHTAKCEK 276
Cdd:COG1196   223 RELELALLLA---KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEE 299
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  277 LQKEKEELERRFEDEVKRLGWQQQAELQELEERLQLQFEAEMARLQEEHGDQLL----SIRCQHQEQVEDLTASHDAALL 352
Cdd:COG1196   300 LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLaeleEAKEELEEKLSALLEELEELFE 379
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  353 EMENNhTVAITILQDDHDHKVQELMSTHELEKKELEENFEKLRLsLQDQVDTLTFQSQSLRDRARRFEEALrKNTEEQLE 432
Cdd:COG1196   380 ALREE-LAELEAELAEIRNELEELKREIESLEERLERLSERLED-LKEELKELEAELEELQTELEELNEEL-EELEEQLE 456
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767977527  433 IALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDLKARI 497
Cdd:COG1196   457 ELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPV 521
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
293-541 2.69e-06

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 50.48  E-value: 2.69e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  293 KRLGWQQQAELQELEERLQ------LQFEAEMARLQEEHgDQLLSIRCQHQEQVEDLTASHDAALLEmENNHTVAITILQ 366
Cdd:COG1196   659 KRSSLAQKRELKELEEELAeleaqlEKLEEELKSLKNEL-RSLEDLLEELRRQLEELERQLEELKRE-LAALEEELEQLQ 736
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  367 DDHDHKVQEL--MSTHELEKKELEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEEAlRKNTEEQLEIALAPYQHLEED 444
Cdd:COG1196   737 SRLEELEEELeeLEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEE-LEELEEELEEAERRLDALERE 815
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  445 MKSLKQVLEMKNQQIHEQEKKI-----------LELEKLAEKNIILEEKIQVLQQQNEDLKARIDQNTvvtRQLSEENAN 513
Cdd:COG1196   816 LESLEQRRERLEQEIEELEEEIeeleekldeleEELEELEKELEELKEELEELEAEKEELEDELKELE---EEKEELEEE 892
                         250       260
                  ....*....|....*....|....*...
gi 767977527  514 LQEYvekeTQEKKRLSRTNEELLWKLQT 541
Cdd:COG1196   893 LREL----ESELAELKEEIEKLRERLEE 916
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
275-552 1.43e-05

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 48.17  E-value: 1.43e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   275 EKLQKEKEELERRFE-DEVKRLGWQQQAELQELEERLQlQFEAEMARLQEEHGDQLLSIRcqhqeqveDLTASHDAALLE 353
Cdd:pfam15921  591 EKAQLEKEINDRRLElQEFKILKDKKDAKIRELEARVS-DLELEKVKLVNAGSERLRAVK--------DIKQERDQLLNE 661
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   354 ME------NNHTVAITILQDDHDHKVQELMSTHelekkeleenfEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNT 427
Cdd:pfam15921  662 VKtsrnelNSLSEDYEVLKRNFRNKSEEMETTT-----------NKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAM 730
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   428 EEQLEIALAPYQ--HLEEDMKSLKQVLEMKNQQIH----EQEKKILELEKLAEKNIILEEKIQVLQQQNEDLKARIDQNT 501
Cdd:pfam15921  731 GMQKQITAKRGQidALQSKIQFLEEAMTNANKEKHflkeEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|.
gi 767977527   502 VVTRQLSEENANLQEYVEKETQEKKRLSRTNEELLWKLQTGDPTSPIKLSP 552
Cdd:pfam15921  811 VALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNSSVKP 861
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
298-541 4.36e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 46.60  E-value: 4.36e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   298 QQQAELQELEERLQlQFEAEMARLQEE--HGDQLLSircQHQEQVEDLTASHDAALLEMEnnhtvaitILQDDHDHKVQE 375
Cdd:TIGR02169  671 SEPAELQRLRERLE-GLKRELSSLQSElrRIENRLD---ELSQELSDASRKIGEIEKEIE--------QLEQEEEKLKER 738
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   376 LmsthelekkeleenfEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQLEIAlAPYQHL-EEDMKSLKQVLEM 454
Cdd:TIGR02169  739 L---------------EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN-DLEARLsHSRIPEIQAELSK 802
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   455 KNQQIHEQEKKILELE----KLAEKNIILEEKIQVLQQQNEDLKARIDQN---------------------TVVTRQLSE 509
Cdd:TIGR02169  803 LEEEVSRIEARLREIEqklnRLTLEKEYLEKEIQELQEQRIDLKEQIKSIekeienlngkkeeleeeleelEAALRDLES 882
                          250       260       270
                   ....*....|....*....|....*....|..
gi 767977527   510 ENANLQEYVEKETQEKKRLSRTNEELLWKLQT 541
Cdd:TIGR02169  883 RLGDLKKERDELEAQLRELERKIEELEAQIEK 914
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
253-538 5.08e-05

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 46.29  E-value: 5.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 253 EKELSIELANIRDEVAFHTAKCEKLQKEKEELERRFEdevKRLGWQQQAELQELEERLQ-LQFEAEMARLQEEHGDQLLS 331
Cdd:COG0419  514 EEELIELLELEEALKEELEEKLEKLENLLEELEELKE---KLQLQQLKEELRQLEDRLQeLKELLEELRLLRTRKEELEE 590
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 332 IRcQHQEQVEDLTASHDAALLEMENNHTvAITILQDDHDHKVQELMSTHELEKKELEENFEKLRLSLQDQVDT--LTFQS 409
Cdd:COG0419  591 LR-ERLKELKKKLKELEERLSQLEELLQ-SLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEkvEELEA 668
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 410 QSLRDRARRFEEALRKNTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQ 489
Cdd:COG0419  669 EIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEEL 748
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 767977527 490 NEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNEELLWK 538
Cdd:COG0419  749 REKLGKAGLRADILRNLLAQIEAEANEILSKLSLNRYDLRRLTIRKDGN 797
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
195-499 1.11e-04

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 45.09  E-value: 1.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  195 QAREAERQLvLRLKERCEQQTRQLGVAQG---ELKRAICGFDALAVATQHFFRKNESALVKEKElsiELANIRDEVAFHT 271
Cdd:COG1196   710 QLEELERQL-EELKRELAALEEELEQLQSrleELEEELEELEEELEELQERLEELEEELESLEE---ALAKLKEEIEELE 785
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  272 AKCEKLQKEKEELERRFEdEVKRLGWQQQAELQELEERLQlQFEAEMARLQEEHgDQLLSIRCQHQEQVEDLTASHDAAL 351
Cdd:COG1196   786 EKRQALQEELEELEEELE-EAERRLDALERELESLEQRRE-RLEQEIEELEEEI-EELEEKLDELEEELEELEKELEELK 862
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  352 LEMENnHTVAITILQDDHDHKVQELMStheleKKELEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQL 431
Cdd:COG1196   863 EELEE-LEAEKEELEDELKELEEEKEE-----LEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELE 936
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767977527  432 EIALAPY--------QHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKniiLEEKIQVLQQQNEDLKARIDQ 499
Cdd:COG1196   937 EEYEDTLetelereiERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQRED---LEEAKEKLLEVIEELDKEKRE 1009
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
252-535 1.12e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 45.01  E-value: 1.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  252 KEKElsIELANIRDEVAFHTAKCEKLQKEKEELERRFEdevkrlgwQQQAELQELEERLQlQFEAEMARLQEEHgDQLLS 331
Cdd:TIGR04523 366 EEKQ--NEIEKLKKENQSYKQEIKNLESQINDLESKIQ--------NQEKLNQQKDEQIK-KLQQEKELLEKEI-ERLKE 433
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  332 IRCQHQEQVEDLTaSHDAALLEMENNH--------------TVAITILQDDHDHKVQELMSTHELEKKELEENFEklrls 397
Cdd:TIGR04523 434 TIIKNNSEIKDLT-NQDSVKELIIKNLdntresletqlkvlSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKE----- 507
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  398 LQDQVDTLTFQSQSLRDRARRFE-EALRKNTEeqleialapYQHLEEDMKSLKQVLEMKN--QQIHEQEKKILEL----E 470
Cdd:TIGR04523 508 LEEKVKDLTKKISSLKEKIEKLEsEKKEKESK---------ISDLEDELNKDDFELKKENleKEIDEKNKEIEELkqtqK 578
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767977527  471 KLAEKNIILEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNEEL 535
Cdd:TIGR04523 579 SLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKL 643
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
254-533 1.17e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 45.05  E-value: 1.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 254 KELSIELANIRDEVAFHTAKCEKLQKEKEELERRFEDEVKRLGWQQQAE-LQELEERLqlqfeaemarlqEEHGDQLLSI 332
Cdd:PRK03918 455 EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEqLKELEEKL------------KKYNLEELEK 522
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 333 RCQHQEQVEDLtashdaaLLEMENNhtvaITILQDDHDhKVQELMStHELEKKELEENFEKLRLSLQDQVDTLTFQS-QS 411
Cdd:PRK03918 523 KAEEYEKLKEK-------LIKLKGE----IKSLKKELE-KLEELKK-KLAELEKKLDELEEELAELLKELEELGFESvEE 589
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 412 LRDRARRFEEALR-----KNTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILEL---------EKLAEKNI 477
Cdd:PRK03918 590 LEERLKELEPFYNeylelKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELekkyseeeyEELREEYL 669
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 767977527 478 ILEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNE 533
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
196-534 1.63e-04

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 44.75  E-value: 1.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 196 AREAERQLVLR---LKERCEQQTRQLGVAQGELKRAICGFDALAVATQHFFRKNESALVKEKELSIELANIRDEVAFhta 272
Cdd:COG0419  151 SKPKERKEILDelfGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEE--- 227
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 273 kcEKLQKEKEELERRFEDEVKRLGWQQQAELQELEERlqlQFEAEMARLQEEHGDQLLSIRCQHQEQVEDLTASHD--AA 350
Cdd:COG0419  228 --EELEQEIEALEERLAELEEEKERLEELKARLLEIE---SLELEALKIREEELRELERLLEELEEKIERLEELEReiEE 302
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 351 LLEMENNHTVAITILQDDHDH---------KVQELMSTHELEKKELEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEE 421
Cdd:COG0419  303 LEEELEGLRALLEELEELLEKlksleerleKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALE 382
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 422 aLRKNTEEQLEIALapyQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQ---QQNEDLKARID 498
Cdd:COG0419  383 -RLKQLEEAIQELK---EELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLEskeLMIAELAGAGE 458
                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 767977527 499 QNTVVTRQLSEENA-NLQEYVEKETQE-KKRLSRTNEE 534
Cdd:COG0419  459 KCPVCGQELPEEHEkELLELYELELEElEEELSREKEE 496
PHA03381 PHA03381
tegument protein VP22; Provisional
37-182 1.64e-04

tegument protein VP22; Provisional


Pssm-ID: 177618 [Multi-domain]  Cd Length: 290  Bit Score: 43.85  E-value: 1.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  37 PQSPAPSPGTVHSQSRAG--QPPEFHLNGTMQYVVSFVWHLSLMLLrlICLVAGSTFGNEEQPVLKASLPSKDTP----K 110
Cdd:PHA03381  25 FISPDASPARVSFEEPADraRRGAGQARGRSQAERRFHHYDEARAD--YPYYTGSSSEDERPADPRPSRRPHAQPeasgP 102
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 111 GAGRVAPPASSSVTAPRRSLLPAPKSTSTPAG-----TKKDAQKDQDT--NKPAVSSPKRV---AASTTKLHSPGYPKQR 180
Cdd:PHA03381 103 GPARGARGPAGSRGRGRRAESPSPRDPPNPKGasaprGRKSACADSAAllDAPAPAAPKRQktpAGLARKLHFSTAPTSP 182

                 ..
gi 767977527 181 TA 182
Cdd:PHA03381 183 TA 184
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
242-541 2.07e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 44.29  E-value: 2.07e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   242 FFRKNESAL-------VKEKELSIELANIRDEVafhtakcEKLQKEKEELERrFEDEVKRL----GWQQQAELQELEERL 310
Cdd:TIGR02169  168 FDRKKEKALeeleeveENIERLDLIIDEKRQQL-------ERLRREREKAER-YQALLKEKreyeGYELLKEKEALERQK 239
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   311 QlQFEAEMARLQEEhgdqllsircqhqeqVEDLTASHDAALLEMEnnhtvAITILQDDHDHKVQELMSTHELEKKELEEN 390
Cdd:TIGR02169  240 E-AIERQLASLEEE---------------LEKLTEEISELEKRLE-----EIEQLLEELNKKIKDLGEEEQLRVKEKIGE 298
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   391 FEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTE--EQLEIALAPYQ----HLEEDMKSLKQVLEMKNQqiheqek 464
Cdd:TIGR02169  299 LEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAeiEELEREIEEERkrrdKLTEEYAELKEELEDLRA------- 371
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   465 kilELEKLAEKNIILEEKIQVLQQQNEDLKARI-------DQNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNEELLW 537
Cdd:TIGR02169  372 ---ELEEVDKEFAETRDELKDYREKLEKLKREInelkrelDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAL 448

                   ....
gi 767977527   538 KLQT 541
Cdd:TIGR02169  449 EIKK 452
46 PHA02562
endonuclease subunit; Provisional
420-549 3.35e-04

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 43.46  E-value: 3.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 420 EEALRKNTEEQLEialapyQHLEEDMKSLKQV-----------LEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQ 488
Cdd:PHA02562 108 ESASSKDFQKYFE------QMLGMNYKSFKQIvvlgtagyvpfMQLSAPARRKLVEDLLDISVLSEMDKLNKDKIRELNQ 181
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767977527 489 QNEDLKARID--------QNTVVTRQLSEENANLQEY-------VEKETQEKKRLSRTNEELL-WKLQTGDPTSPIK 549
Cdd:PHA02562 182 QIQTLDMKIDhiqqqiktYNKNIEEQRKKNGENIARKqnkydelVEEAKTIKAEIEELTDELLnLVMDIEDPSAALN 258
Lipoprotein_7 pfam01540
Adhesin lipoprotein; This family consists of the p50 and variable adherence-associated antigen ...
425-540 3.47e-04

Adhesin lipoprotein; This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50-kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host. p50 is also a 50-kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191-kDa in its native environment.


Pssm-ID: 110537 [Multi-domain]  Cd Length: 353  Bit Score: 43.15  E-value: 3.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  425 KNTEEQLEIALAPYQHLEEDMKS---LKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDLKARIDQNT 501
Cdd:pfam01540  35 KNGKEKADAALKQANALAEELKKnpdYSKILETLNKEIAEATKSFKEAGSYGDYPAIISKLSAAVENAKNEKKAIDDKNA 114
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 767977527  502 VVTRQLSEENANLQEYVE---KETQEKKRLSRTNEELLWKLQ 540
Cdd:pfam01540 115 QIAKELAERNAKIQSNIEelkKINNEAFELSKTVNKTIAEVE 156
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
207-535 3.64e-04

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 43.56  E-value: 3.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  207 LKERCEQQ---TRQLGVAQGELKRAICGFDALAVATQhFFRKNESALVKEKELSIELANIRDE------VAFHTAKC--- 274
Cdd:pfam05483 284 LKELIEKKdhlTKELEDIKMSLQRSMSTQKALEEDLQ-IATKTICQLTEEKEAQMEELNKAKAahsfvvTEFEATTCsle 362
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  275 EKLQKEKEELERRfEDEVKRLGWQQQAELQELEERLQLQF--EAEMARLQEEHGDQ--LLSIRCQHQEQVEDLTASHDAA 350
Cdd:pfam05483 363 ELLRTEQQRLEKN-EDQLKIITMELQKKSSELEEMTKFKNnkEVELEELKKILAEDekLLDEKKQFEKIAEELKGKEQEL 441
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  351 LLEME------NNHTVAITILQDDHDHKVQELMSTHELEKKELEENFEklrlsLQDQVDTLTFQSQSLRDRARRFEEALR 424
Cdd:pfam05483 442 IFLLQarekeiHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIE-----LTAHCDKLLLENKELTQEASDMTLELK 516
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  425 K------NTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKI-LELEKLAEKNIILEEKIQVLQQQNEDLKARI 497
Cdd:pfam05483 517 KhqediiNCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVkCKLDKSEENARSIEYEVLKKEKQMKILENKC 596
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 767977527  498 DQntvVTRQLSEENANLQEYVEKETQEKKRLSRTNEEL 535
Cdd:pfam05483 597 NN---LKKQIENKNKNIEELHQENKALKKKGSAENKQL 631
PRK12704 PRK12704
phosphodiesterase; Provisional
410-534 6.03e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.46  E-value: 6.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 410 QSLRDRARRFEEALRKNTEEQLEIALapyQHLEEDMKSLKQVLEmknQQIHEQEKKILELEK-LAEKNIILEEKIQVLQQ 488
Cdd:PRK12704  34 KEAEEEAKRILEEAKKEAEAIKKEAL---LEAKEEIHKLRNEFE---KELRERRNELQKLEKrLLQKEENLDRKLELLEK 107
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 767977527 489 QNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSR-TNEE 534
Cdd:PRK12704 108 REEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGlTAEE 154
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
443-535 6.34e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 42.70  E-value: 6.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  443 EDMKSLKQVLEMKNQQIHEQ-EKKILELEKLAEKNIILEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKE 521
Cdd:TIGR04523 345 SQLKKELTNSESENSEKQRElEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELL 424
                          90
                  ....*....|....
gi 767977527  522 TQEKKRLSRTNEEL 535
Cdd:TIGR04523 425 EKEIERLKETIIKN 438
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
243-524 7.59e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 42.36  E-value: 7.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 243 FRKNESALVKEKELSIELANIRDEV-AFHTAKCEKLQKEKEELERRF---EDEVKRLGwQQQAELQELEERLQLqFEAEM 318
Cdd:PRK03918 488 VLKKESELIKLKELAEQLKELEEKLkKYNLEELEKKAEEYEKLKEKLiklKGEIKSLK-KELEKLEELKKKLAE-LEKKL 565
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 319 ARLQEEHGDQLLSIRCQHQEQVEDLtashDAALLEMENNHTVAITILQDDHDHKVQElmsthelekkeleENFEKLRLSL 398
Cdd:PRK03918 566 DELEEELAELLKELEELGFESVEEL----EERLKELEPFYNEYLELKDAEKELEREE-------------KELKKLEEEL 628
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 399 QDQVDTLTFQSQSLRDRARRFEEALRKNTEEQleialapYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNII 478
Cdd:PRK03918 629 DKAFEELAETEKRLEELRKELEELEKKYSEEE-------YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 767977527 479 LEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQE 524
Cdd:PRK03918 702 ELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGE 747
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
192-534 8.55e-04

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 42.33  E-value: 8.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 192 PDPQAREAERQLVLRLKERCEQQTRQLGVAQGELKRAIcgfDALAVATQHFFRKNESALVKEKELSIELANIRDEVAFHT 271
Cdd:PRK02224 307 ADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEA---ESLREDADDLEERAEELREEAAELESELEEAREAVEDRR 383
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 272 AKCEKLQKEKEELERRFEDEVKRLGWQQ--------------------QAELQELEERLqlqfeAEMARLQEE------- 324
Cdd:PRK02224 384 EEIEELEEEIEELRERFGDAPVDLGNAEdfleelreerdelrereaelEATLRTARERV-----EEAEALLEAgkcpecg 458
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 325 -------HGDQLLSIRcqhqEQVEDLTASHDAALLEMENnhtvaitiLQDDHDhKVQELMSTHEL--EKKELEENFEKLR 395
Cdd:PRK02224 459 qpvegspHVETIEEDR----ERVEELEAELEDLEEEVEE--------VEERLE-RAEDLVEAEDRieRLEERREDLEELI 525
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 396 LSLQDQVDTLTFQSQSLRDRArrfeEALRKNTEEQLEIAlapyQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEK 475
Cdd:PRK02224 526 AERRETIEEKRERAEELRERA----AELEAEAEEKREAA----AEAEEEAEEAREEVAELNSKLAELKERIESLERIRTL 597
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767977527 476 NIILEEKIQVLQQQNEDLKARIDQNTVVTRQLSEEN---ANLQEYVEKETQEKKRLSRTNEE 534
Cdd:PRK02224 598 LAAIADAEDEIERLREKREALAELNDERRERLAEKRerkRELEAEFDEARIEEAREDKERAE 659
PRK11281 PRK11281
mechanosensitive channel MscK;
426-532 8.97e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 42.21  E-value: 8.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  426 NTEEQLEIALAPYQHLEEDMKSLKQVL-----EMKNQQIHEQEKKILEL-EKLAEKNIILEEKiQVLQQQNEDLKARIDQ 499
Cdd:PRK11281  198 QAEQALLNAQNDLQRKSLEGNTQLQDLlqkqrDYLTARIQRLEHQLQLLqEAINSKRLTLSEK-TVQEAQSQDEAARIQA 276
                          90       100       110
                  ....*....|....*....|....*....|...
gi 767977527  500 NTVVTRQLsEENANLQEYVEKETQEKKRLSRTN 532
Cdd:PRK11281  277 NPLVAQEL-EINLQLSQRLLKATEKLNTLTQQN 308
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
408-540 1.74e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.20  E-value: 1.74e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   408 QSQSLRDRARRFEEALRKNTEE---QLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELE-KLAEKNII---LE 480
Cdd:TIGR02168  201 QLKSLERQAEKAERYKELKAELrelELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEeKLEELRLEvseLE 280
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   481 EKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNEELLWKLQ 540
Cdd:TIGR02168  281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA 340
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
254-535 1.77e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 41.20  E-value: 1.77e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 254 KELSIELANIRDEVafhtakcEKLQKEKEELERRFE--DEVKRLGWQQQAELQELEERLQlQFEAEMARLQEEHGDQlls 331
Cdd:PRK03918 210 NEISSELPELREEL-------EKLEKEVKELEELKEeiEELEKELESLEGSKRKLEEKIR-ELEERIEELKKEIEEL--- 278
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 332 ircqhQEQVEDLTAshdaalLEMENNHTVAITILQDDHDHKVQELmsthelekKELEENFEKLRLSLQDQVDTLTFQSQS 411
Cdd:PRK03918 279 -----EEKVKELKE------LKEKAEEYIKLSEFYEEYLDELREI--------EKRLSRLEEEINGIEERIKELEEKEER 339
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 412 LRDRARRFEEALRKNTEeqleiaLAPYQHLEEDMKSLKQVLE-----MKNQQIHEQEKKILELEK----LAEKNIILEEK 482
Cdd:PRK03918 340 LEELKKKLKELEKRLEE------LEERHELYEEAKAKKEELErlkkrLTGLTPEKLEKELEELEKakeeIEEEISKITAR 413
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 483 IQVLQQQNEDLKARIDQ-------NTVVTRQLSEENAnlQEYVEKETQEKKRLSRTNEEL 535
Cdd:PRK03918 414 IGELKKEIKELKKAIEElkkakgkCPVCGRELTEEHR--KELLEEYTAELKRIEKELKEI 471
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
63-200 2.07e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 41.08  E-value: 2.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  63 GTMQYVVSFVWHLSLMLLRLICLVAGSTfgnEEQPVLKASLPSKDT-----PKGAGRVAPPASSSVTAPRRSLLPAPKST 137
Cdd:PRK14954 351 GELKFQFEYQFRFELALLRLIELVRNDG---GVAPSPAGSPDVKKKapepdLPQPDRHPGPAKPEAPGARPAELPSPASA 427
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767977527 138 STPAGTKKDAQKDQDTNKPAVSSPKRVAASTTKLHSPGYPKQRTAAARNGFPPKPdPQAREAE 200
Cdd:PRK14954 428 PTPEQQPPVARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQP-VQASSSD 489
PHA03247 PHA03247
large tegument protein UL36; Provisional
97-199 2.81e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 2.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   97 PVLKASLPSKDTPKGAGRVAPPASSSVTAPRRslLPAPKSTSTPAGTKKDAQKDQDTNKPAVSSPKRVAASTTKLHSPGY 176
Cdd:PHA03247 2751 PGGPARPARPPTTAGPPAPAPPAAPAAGPPRR--LTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL 2828
                          90       100
                  ....*....|....*....|...
gi 767977527  177 PKQRTAAARNGFPPKPDPQAREA 199
Cdd:PHA03247 2829 PPPTSAQPTAPPPPPGPPPPSLP 2851
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
362-541 2.84e-03

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 40.51  E-value: 2.84e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 362 ITILQDDHDHKVQELMSTHELEKKELEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEEaLRKNTEEQLEIALAPYQHL 441
Cdd:COG0419  194 LSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEE-LKARLLEIESLELEALKIR 272
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 442 EEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKE 521
Cdd:COG0419  273 EEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEK 352
                        170       180
                 ....*....|....*....|
gi 767977527 522 TQEKKRLSRTNEELLWKLQT 541
Cdd:COG0419  353 NELAKLLEERLKELEERLEE 372
Jnk-SapK_ap_N pfam09744
JNK_SAPK-associated protein-1; This is the N-terminal 200 residues of a set of proteins ...
426-533 3.07e-03

JNK_SAPK-associated protein-1; This is the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have an RhoGEF pfam00621 domain at their C-terminal end.


Pssm-ID: 430795 [Multi-domain]  Cd Length: 156  Bit Score: 38.39  E-value: 3.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  426 NTEEQLEIALAPYQHLEEDMKSLKQVLEmknQQIHEQEKKIlELEKLAEKNiiLEEKIQVLQQQNEDLKARIDQNTVVTR 505
Cdd:pfam09744  33 NVLELLESLASRNQEHNVELEELREDNE---QLETQYEREK-QLRKRAEEE--LEEIEDQWEQETKDLQSQVEQLEEENR 106
                          90       100       110
                  ....*....|....*....|....*....|..
gi 767977527  506 QLSEENANLQEYV----EKETQEKKRLSRTNE 533
Cdd:pfam09744 107 RLELKAKNYADHVsrleEKEAELKKEYSKLHE 138
CCDC14 pfam15254
Coiled-coil domain-containing protein 14; This protein family, Coiled-coil domain-containing ...
426-543 3.09e-03

Coiled-coil domain-containing protein 14; This protein family, Coiled-coil domain-containing protein 14 (CCDC14) is a domain of unknown function. This family of proteins is found in eukaryotes. Proteins in this family are typically between 301 and 912 amino acids in length.


Pssm-ID: 434576  Cd Length: 867  Bit Score: 40.53  E-value: 3.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  426 NTEEQLEIALApYQHLEEDMKSLKQVLEMKNQQIHEQEKKI---------LELEKLAEKNIILEEKIQVLQQQNEDLKAR 496
Cdd:pfam15254 384 NTNIQVEIALA-LQPLRSENAQLRRRLRILNQQLREQEKTEktsgsldcnFELISLQSLNMSLQNQLQESLKSQELLQSK 462
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 767977527  497 idqntvvtrqlseeNANLQEYVEKETQEKKRLSRT----NEELLWKLQTGD 543
Cdd:pfam15254 463 --------------NEELLKVIENQKEENKKLTKIfkekDQTLLENKQQFD 499
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
451-541 3.97e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 40.00  E-value: 3.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  451 VLEMKNQQIHEQEKKILELEKlaeKNIILEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSR 530
Cdd:TIGR04523 205 NLKKKIQKNKSLESQISELKK---QNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNK 281
                          90
                  ....*....|.
gi 767977527  531 TNEELLWKLQT 541
Cdd:TIGR04523 282 KIKELEKQLNQ 292
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
252-471 4.35e-03

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 40.02  E-value: 4.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 252 KEKELSIELANIRDEVAFHTAKCEKLQKEKEELERRFEDEVKRLG--WQQQAELQELEERLQLQFE--AEMARLQEEHGD 327
Cdd:PRK02224 200 EEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEehEERREELETLEAEIEDLREtiAETEREREELAE 279
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 328 QLLSircqHQEQVEDLtashdaallEMENNHTVAITILQDDHDHKVQELMSTHELEKKELEENFEKLRLSLQDqvdtLTF 407
Cdd:PRK02224 280 EVRD----LRERLEEL---------EEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQA----HNE 342
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767977527 408 QSQSLRDRARRFEEALRKNTEEQLEialapyqhLEEDMKSLKQVLEMKNQQIHEQEKKILELEK 471
Cdd:PRK02224 343 EAESLREDADDLEERAEELREEAAE--------LESELEEAREAVEDRREEIEELEEEIEELRE 398
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
392-536 4.71e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.04  E-value: 4.71e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   392 EKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQLEIALA------PYQHLEEDMKSLKQVLEMKNQQIHEQEKK 465
Cdd:TIGR02168  252 EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEisrleqQKQILRERLANLERQLEELEAQLEELESK 331
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767977527   466 ILEL-EKLAEkniiLEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEyvEKETQEKKRLSRTNEELL 536
Cdd:TIGR02168  332 LDELaEELAE----LEEKLEELKEELESLEAELEELEAELEELESRLEELEE--QLETLRSKVAQLELQIAS 397
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
260-541 5.82e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 39.57  E-value: 5.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   260 LANIRDEVAFHTAKCEKLQKEKEELERRFEDEVKRLGWQQQA-ELQELEERLQLQfEAEMARLQEEhgdqlLSIRCQHQE 338
Cdd:TIGR00618  221 KQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLkQLRARIEELRAQ-EAVLEETQER-----INRARKAAP 294
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   339 QVEdltasHDAALLEMENNHTVAITILQDDHDHKVQELMsthelekkeLEENFEKLRLSLQDQVDTL-TFQSQSLRDRAR 417
Cdd:TIGR00618  295 LAA-----HIKAVTQIEQQAQRIHTELQSKMRSRAKLLM---------KRAAHVKQQSSIEEQRRLLqTLHSQEIHIRDA 360
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   418 RFEEALRKnteEQLEIALAPYQHLeedmKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDLKARI 497
Cdd:TIGR00618  361 HEVATSIR---EISCQQHTLTQHI----HTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQ 433
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 767977527   498 D---QNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNEELLWKLQT 541
Cdd:TIGR00618  434 ElqqRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQ 480
COG4487 COG4487
Uncharacterized protein, contains DUF2130 domain [Function unknown];
299-514 6.19e-03

Uncharacterized protein, contains DUF2130 domain [Function unknown];


Pssm-ID: 226889 [Multi-domain]  Cd Length: 438  Bit Score: 39.03  E-value: 6.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 299 QQAELQELEERLQLQFEAEMARLQEEHGDQLLSIRCQHQEQVEDLTASHDAALLEMENNHTVAITILqddhDHKVQELMS 378
Cdd:COG4487   25 EQARYKQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQF----ELALQDEIA 100
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 379 THELEKKELEENfEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQLEIALAPYQHLEEDMKSLKQVLEmknQQ 458
Cdd:COG4487  101 KLEALELLNLEK-DKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFE---EQ 176
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 767977527 459 IHEQEKKILELEKlaekniilEEKIQVLQQQNEDLKARIDQ--NTVVTRQLSEENANL 514
Cdd:COG4487  177 LHEANLDLEFKEN--------EEQRESKWAILKKLKRRAELgsQQVQGEALELPNESF 226
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
287-543 6.91e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 39.57  E-value: 6.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   287 RFEDEVKRLGWQQQ---AELQELEERLQlQFEAEMARLQEEHgDQLLSIRCQHQEQVEDLTASHDAALLEMENNHTVAIT 363
Cdd:TIGR00618  532 RGEQTYAQLETSEEdvyHQLTSERKQRA-SLKEQMQEIQQSF-SILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDM 609
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   364 ILQDDHDHKVQELMSTHELEKKELEENFEK----LRLSLQDQVDTLTFQSQSLRDRARRFEEALRKnteEQLEIALAPYQ 439
Cdd:TIGR00618  610 LACEQHALLRKLQPEQDLQDVRLHLQQCSQelalKLTALHALQLTLTQERVREHALSIRVLPKELL---ASRQLALQKMQ 686
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   440 HLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKniileekiqvLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVE 519
Cdd:TIGR00618  687 SEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNE----------IENASSSLGSDLAAREDALNQSLKELMHQARTVL 756
                          250       260
                   ....*....|....*....|....
gi 767977527   520 KETQEKKrlSRTNEELLWKLQTGD 543
Cdd:TIGR00618  757 KARTEAH--FNNNEEVTAALQTGA 778
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
178-534 8.18e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 39.05  E-value: 8.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   178 KQRTAAARNGFPPKPDPQAREAErqlvlrLKERCEQQTRQLGVAQGELKRAICGFDALAVATQHffrknESALVKEKELS 257
Cdd:pfam12128  401 KIREARDRQLAVAEDDLQALESE------LREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATA-----TPELLLQLENF 469
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   258 IELAN-IRDEVAFHTAKCEKLQKEKEELERRFEDEVKRLG------WQQQAELQELEERLQ------LQFEAEMARLQEE 324
Cdd:pfam12128  470 DERIErAREEQEAANAEVERLQSELRQARKRRDQASEALRqasrrlEERQSALDELELQLFpqagtlLHFLRKEAPDWEQ 549
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   325 HGDQLLSIRCQHQeqvEDLTASHDAALLEMENN-HTVAITILQDDHDHKVQelmsthelekkeleenfekLRLSLQDQVD 403
Cdd:pfam12128  550 SIGKVISPELLHR---TDLDPEVWDGSVGGELNlYGVKLDLKRIDVPEWAA-------------------SEEELRERLD 607
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527   404 TLTFQSQSLRDRARRFEEAL---RKNTEEQ---LEIALAPYQHLEEDMKSL---KQVLEMKNQQIHEQEKKIL--ELEKL 472
Cdd:pfam12128  608 KAEEALQSAREKQAAAEEQLvqaNGELEKAsreETFARTALKNARLDLRRLfdeKQSEKDKKNKALAERKDSAneRLNSL 687
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767977527   473 -AEKNIILEEKIQVLQQQNEDLK----ARIDQNTVVTRQLSEENANLQEYVEK-ETQEKKRLSRTNEE 534
Cdd:pfam12128  688 eAQLKQLDKKHQAWLEEQKEQKReartEKQAYWQVVEGALDAQLALLKAAIAArRSGAKAELKALETW 755
mukB PRK04863
chromosome partition protein MukB;
195-496 8.89e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 39.17  E-value: 8.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  195 QAREAErQLVLRLKERC--------EQQTR--QLGVAQGELKRA--ICGFDALAV----ATQHFFRKNESALVK-----E 253
Cdd:PRK04863  384 RAEAAE-EEVDELKSQLadyqqaldVQQTRaiQYQQAVQALERAkqLCGLPDLTAdnaeDWLEEFQAKEQEATEellslE 462
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  254 KELSI-ELANIRDEVAFHTAKC-------EKLQKEKEELERRFEDEVKRLGWQQQ--AELQELEERLQLQFEAEmaRLQE 323
Cdd:PRK04863  463 QKLSVaQAAHSQFEQAYQLVRKiagevsrSEAWDVARELLRRLREQRHLAEQLQQlrMRLSELEQRLRQQQRAE--RLLA 540
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  324 EHGdQLLSIRCQHQEQVEDLTASHDAALlemennhtvaitilqDDHDHKVQELmsthelekkeleenfEKLRLSLQDQVD 403
Cdd:PRK04863  541 EFC-KRLGKNLDDEDELEQLQEELEARL---------------ESLSESVSEA---------------RERRMALRQQLE 589
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  404 TLTFQSQSLRDRARRFEEAlrKNTEEQLeialapYQHLEEDMKSLKQVLE-MKNQQIHEQEkkilelekLAEKNIILEEK 482
Cdd:PRK04863  590 QLQARIQRLAARAPAWLAA--QDALARL------REQSGEEFEDSQDVTEyMQQLLERERE--------LTVERDELAAR 653
                         330
                  ....*....|....
gi 767977527  483 IQVLQQQNEDLKAR 496
Cdd:PRK04863  654 KQALDEEIERLSQP 667
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
276-535 9.93e-03

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 38.93  E-value: 9.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  276 KLQKEKEELERRFEDEVKRLGwQQQAELQELEERLQ-LQFEAEMARlqeehgdqllsircQHQEQVEDLTAsHDAALLEM 354
Cdd:COG1196   169 KYKERKEEAERKLERTEENLE-RLEDLLEELEKQLEkLERQAEKAE--------------RYQELKAELRE-LELALLLA 232
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  355 EnnhtvaitilQDDHDHKVQELMStHELEKKELEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQLEia 434
Cdd:COG1196   233 K----------LKELRKELEELEE-ELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEE-- 299
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527  435 lapyqhLEEDMKSLKQvlemknqqihEQEKKILELEKLAEKNIILEEKIQVLQQQNE-------DLKARIDQNTVVTRQL 507
Cdd:COG1196   300 ------LEGEISLLRE----------RLEELENELEELEERLEELKEKIEALKEELEeretlleELEQLLAELEEAKEEL 363
                         250       260
                  ....*....|....*....|....*....
gi 767977527  508 SEENANLQEYVEKETQE-KKRLSRTNEEL 535
Cdd:COG1196   364 EEKLSALLEELEELFEAlREELAELEAEL 392
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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