|
Name |
Accession |
Description |
Interval |
E-value |
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
272-535 |
1.05e-11 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 223496 [Multi-domain] Cd Length: 908 Bit Score: 67.86 E-value: 1.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 272 AKCEKLQKEKEELERRFEDEVKRLgwqqQAELQELEERLQLQFEAEMARLQEEHgdQLLSIRCQHQEQVEDLTASHDAAL 351
Cdd:COG0419 185 AKIEELEGQLSELLEDIEDLLEAL----EEELKELKKLEEIQEEQEEEELEQEI--EALEERLAELEEEKERLEELKARL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 352 LEMENNHTVAITILQDDHDHKVQELMSTHELEK--KELEENFEKLRLSLQDQVDTLTFQsQSLRDRARRFEEALRKNTE- 428
Cdd:COG0419 259 LEIESLELEALKIREEELRELERLLEELEEKIErlEELEREIEELEEELEGLRALLEEL-EELLEKLKSLEERLEKLEEk 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 429 -EQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKilELEKLAEKNIILEEKIQVLQQQNEDLKARIDQNTVVTRQL 507
Cdd:COG0419 338 lEKLESELEELAEEKNELAKLLEERLKELEERLEELEK--ELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEEL 415
|
250 260
....*....|....*....|....*...
gi 767977527 508 SEENANLQEYVEKETQEKKRLSRTNEEL 535
Cdd:COG0419 416 EKELEELERELEELEEEIKKLEEQINQL 443
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
196-529 |
8.22e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 8.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 196 AREAERQLV-LRLKERCEQQTRQLGVAQGELKRAicgfdaLAVATQHFFRKN-ESALVKEKELSIELANIRDEVAFHTAK 273
Cdd:TIGR02168 195 LNELERQLKsLERQAEKAERYKELKAELRELELA------LLVLRLEELREElEELQEELKEAEEELEELTAELQELEEK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 274 CEKLQKEKEELERRFEDEVKRLGwQQQAELQELEERLQLQfEAEMARLQ---EEHGDQLLSIRCQHQEQVEDLTAShDAA 350
Cdd:TIGR02168 269 LEELRLEVSELEEEIEELQKELY-ALANEISRLEQQKQIL-RERLANLErqlEELEAQLEELESKLDELAEELAEL-EEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 351 LLEMENNHTVaitiLQDDHD--HKVQELMSTHELEKKELEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTE 428
Cdd:TIGR02168 346 LEELKEELES----LEAELEelEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 429 EQLEIALAPYQH-LEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDLKARIDqntvVTRQL 507
Cdd:TIGR02168 422 EIEELLKKLEEAeLKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD----SLERL 497
|
330 340
....*....|....*....|..
gi 767977527 508 SEENANLQEYVEKETQEKKRLS 529
Cdd:TIGR02168 498 QENLEGFSEGVKALLKNQSGLS 519
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
244-544 |
6.58e-10 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 62.04 E-value: 6.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 244 RKNESALVKEKELSIELANIRDEVAFHTAKCEKLQKEKEELERRfEDEVKRLGWQQQAELQELEERLQlQFEAEMARLQE 323
Cdd:COG1196 660 RSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDL-LEELRRQLEELERQLEELKRELA-ALEEELEQLQS 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 324 EHGDQLLSIRcQHQEQVEDLtashDAALLEMENNHTVAITILQDDHDhKVQELmSTHELEKKELEENFEKLRLSLQDQVD 403
Cdd:COG1196 738 RLEELEEELE-ELEEELEEL----QERLEELEEELESLEEALAKLKE-EIEEL-EEKRQALQEELEELEEELEEAERRLD 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 404 TLTFQSQSLRDRARRFEEALRKNTEEQLEIALApYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKniiLEEKI 483
Cdd:COG1196 811 ALERELESLEQRRERLEQEIEELEEEIEELEEK-LDELEEELEELEKELEELKEELEELEAEKEELEDELKE---LEEEK 886
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767977527 484 QVLQQQNEDLKARIDqntvvtrQLSEENANLQEYVEKETQEKKRLSRTNEELLWKLQTGDP 544
Cdd:COG1196 887 EELEEELRELESELA-------ELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYE 940
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
252-535 |
6.69e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 6.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 252 KEKELSIELANIRDEVAFHTAKCEKLQKEKEELERRFEDEVKRLGWQQQAELQELEERLQLQFEAEMARLQEEHGDQLLS 331
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 332 IRCQHQEQVEDLTASHDAALLEMENNHTV---AITILQDDHD------HKVQELMSTHELEKKELEENFEKLRLSLQDQV 402
Cdd:TIGR02168 772 EAEEELAEAEAEIEELEAQIEQLKEELKAlreALDELRAELTllneeaANLRERLESLERRIAATERRLEDLEEQIEELS 851
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 403 DTLTFQSQSLRDrarrfEEALRKNTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELE----KLAEKNII 478
Cdd:TIGR02168 852 EDIESLAAEIEE-----LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRreleELREKLAQ 926
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 767977527 479 LEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEK-KRLSRTNEEL 535
Cdd:TIGR02168 927 LELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRlKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
254-527 |
2.96e-09 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 60.11 E-value: 2.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 254 KELSIELANIRDEVAFHTAKCEKLQKEKEELERRfEDEVKRLGWQQQAELQELEERLQLQfEAEMARLQEEHgDQLLSIR 333
Cdd:COG1196 684 EKLEEELKSLKNELRSLEDLLEELRRQLEELERQ-LEELKRELAALEEELEQLQSRLEEL-EEELEELEEEL-EELQERL 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 334 CQHQEQVEDLtaSHDAALLEMENNHTVAITILQDDHDHKVQELMSTHELEKKELEENFEKLRL----------SLQDQVD 403
Cdd:COG1196 761 EELEEELESL--EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQrrerleqeieELEEEIE 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 404 TLTFQSQSLRDRARRFEEALRkNTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELE-KLAEKNIILEEK 482
Cdd:COG1196 839 ELEEKLDELEEELEELEKELE-ELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKeEIEKLRERLEEL 917
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 767977527 483 IQVLQQQNEDLKARIDQNTvvtrqlSEENANLQEYVEKETQEKKR 527
Cdd:COG1196 918 EAKLERLEVELPELEEELE------EEYEDTLETELEREIERLEE 956
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
195-499 |
4.34e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 4.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 195 QAREAERQLVLRLKERCEQQTRQLGVAQGELKRAICGFDALAVATQHFFRKNESALVKEKELSIELANIRDEVAFHTAKC 274
Cdd:TIGR02168 705 KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 275 EKLQKEKEELERRFEDEVKRLGwQQQAELQELEERLQlQFEAEMARLQEEHGDQLLSIRcQHQEQVEDLTASHDAALLEM 354
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALD-ELRAELTLLNEEAA-NLRERLESLERRIAATERRLE-DLEEQIEELSEDIESLAAEI 861
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 355 ENnHTVAITILQDDHDHKVQELMSThelekkeleenfEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQLEIA 434
Cdd:TIGR02168 862 EE-LEELIEELESELEALLNERASL------------EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLE 928
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767977527 435 LApyqhleedmkslKQVLEMKNQQIHEQ--EKKILELEKLAEKNIILEEKIQVLQQQNEDLKARIDQ 499
Cdd:TIGR02168 929 LR------------LEGLEVRIDNLQERlsEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
269-534 |
1.31e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 57.83 E-value: 1.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 269 FHTAKCEKLQKEKEELERRFE--------DEVKRLGWQQQAELQELEERLQLQFEAEMARLQEEHGDQLLSiRCQHQEQV 340
Cdd:pfam17380 293 FEKMEQERLRQEKEEKAREVErrrkleeaEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELE-RIRQEEIA 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 341 EDLTASHDAALLEMENNHTVAITILQDDHDHKVQELMSTHELEKKELEENFEKLRlslQDQVDTLTFQSQSLRD-RARRF 419
Cdd:pfam17380 372 MEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIR---AEQEEARQREVRRLEEeRAREM 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 420 EEALRKNTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQ-IHEQEKKILELEKLAEKNIILEE--KIQVLQQQNEDLKA- 495
Cdd:pfam17380 449 ERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKrAEEQRRKILEKELEERKQAMIEEerKRKLLEKEMEERQKa 528
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 767977527 496 -------RIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNEE 534
Cdd:pfam17380 529 iyeeerrREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERE 574
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
244-539 |
1.35e-07 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 54.72 E-value: 1.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 244 RKNESALVKEKELSIELANIRDEVAFHTAKCEKLQKEKEELER--RFEDEVKRL-GWQQQAELQELEERLQlQFEAEMAR 320
Cdd:COG1196 172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERyqELKAELRELeLALLLAKLKELRKELE-ELEEELSR 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 321 LQEEHGDqllsircqHQEQVEDLTASHDAALLEMENnhtvaitilqddhdhkvqelMSTHELEKKELEENFEKLRLSLQD 400
Cdd:COG1196 251 LEEELEE--------LQEELEEAEKEIEELKSELEE--------------------LREELEELQEELLELKEEIEELEG 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 401 QVDTLTFQSQSLRDRARRFEEALRK------NTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILEL-EKLA 473
Cdd:COG1196 303 EISLLRERLEELENELEELEERLEElkekieALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELfEALR 382
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767977527 474 EKNIILEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNEELLWKL 539
Cdd:COG1196 383 EELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEEL 448
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
255-535 |
3.75e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 3.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 255 ELSIELANIRDEVAFHTAKCEKLQKEKEELERrfedevkrlgwqqqaELQELEERL-QLQFEAEMARLQEEHGDQLLSIR 333
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRK---------------ELEELEEELeQLRKELEELSRQISALRKDLARL 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 334 CQHQEQVEDLTASHDAALLEMENNHTVAITILQDDHDHKVQElmsthelekkeleenfEKLRLSLQDQVDTLTFQSQSLR 413
Cdd:TIGR02168 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA----------------EAEIEELEAQIEQLKEELKALR 802
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 414 DRARRFEEALRkNTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDL 493
Cdd:TIGR02168 803 EALDELRAELT-LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE 881
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 767977527 494 KARIDQNTVVTRQLSEENANLQEYVEKETQEKKR-LSRTNEEL 535
Cdd:TIGR02168 882 RASLEEALALLRSELEELSEELRELESKRSELRReLEELREKL 924
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
197-499 |
9.93e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 9.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 197 REAERQLVLRLKERCEQQTRQLGVAQGELKRAICGFDALAVATQHFFRKNESALVKEKElsiELANIRDEVAFHTAKCEK 276
Cdd:TIGR02169 700 IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS---ELKELEARIEELEEDLHK 776
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 277 LQKEKEELERRFEDEvkrlGWQQ-QAELQELEE---RLQLQFEAEMARLQEEHGD-QLLSIRCQH-QEQVEDLTASHDAA 350
Cdd:TIGR02169 777 LEEALNDLEARLSHS----RIPEiQAELSKLEEevsRIEARLREIEQKLNRLTLEkEYLEKEIQElQEQRIDLKEQIKSI 852
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 351 LLEMENNHTVAITILQ--DDHDHKVQELMSTHELEKKELEENFEKLRlSLQDQVDTLTFQSQSLRDRARRFEEALRKNTE 428
Cdd:TIGR02169 853 EKEIENLNGKKEELEEelEELEAALRDLESRLGDLKKERDELEAQLR-ELERKIEELEAQIEKKRKRLSELKAKLEALEE 931
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 429 EQLEIALAPYQHLEE-----DMKSLKQVLEMKNQQIHEQE----KKILELEKLAEKNIILEEKIQVLQQQNEDLKARIDQ 499
Cdd:TIGR02169 932 ELSEIEDPKGEDEEIpeeelSLEDVQAELQRVEEEIRALEpvnmLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEE 1011
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
197-497 |
1.54e-06 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 51.25 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 197 REAERQLVLRlkeRCEQQTRQLGVAQGELKRAICGFDALAVATQHFFRKNESALVKEKELSIELANIRDEVAFHTAKCEK 276
Cdd:COG1196 223 RELELALLLA---KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 277 LQKEKEELERRFEDEVKRLGWQQQAELQELEERLQLQFEAEMARLQEEHGDQLL----SIRCQHQEQVEDLTASHDAALL 352
Cdd:COG1196 300 LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLaeleEAKEELEEKLSALLEELEELFE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 353 EMENNhTVAITILQDDHDHKVQELMSTHELEKKELEENFEKLRLsLQDQVDTLTFQSQSLRDRARRFEEALrKNTEEQLE 432
Cdd:COG1196 380 ALREE-LAELEAELAEIRNELEELKREIESLEERLERLSERLED-LKEELKELEAELEELQTELEELNEEL-EELEEQLE 456
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767977527 433 IALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDLKARI 497
Cdd:COG1196 457 ELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPV 521
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
293-541 |
2.69e-06 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 50.48 E-value: 2.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 293 KRLGWQQQAELQELEERLQ------LQFEAEMARLQEEHgDQLLSIRCQHQEQVEDLTASHDAALLEmENNHTVAITILQ 366
Cdd:COG1196 659 KRSSLAQKRELKELEEELAeleaqlEKLEEELKSLKNEL-RSLEDLLEELRRQLEELERQLEELKRE-LAALEEELEQLQ 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 367 DDHDHKVQEL--MSTHELEKKELEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEEAlRKNTEEQLEIALAPYQHLEED 444
Cdd:COG1196 737 SRLEELEEELeeLEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEE-LEELEEELEEAERRLDALERE 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 445 MKSLKQVLEMKNQQIHEQEKKI-----------LELEKLAEKNIILEEKIQVLQQQNEDLKARIDQNTvvtRQLSEENAN 513
Cdd:COG1196 816 LESLEQRRERLEQEIEELEEEIeeleekldeleEELEELEKELEELKEELEELEAEKEELEDELKELE---EEKEELEEE 892
|
250 260
....*....|....*....|....*...
gi 767977527 514 LQEYvekeTQEKKRLSRTNEELLWKLQT 541
Cdd:COG1196 893 LREL----ESELAELKEEIEKLRERLEE 916
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
275-552 |
1.43e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 435022 [Multi-domain] Cd Length: 1112 Bit Score: 48.17 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 275 EKLQKEKEELERRFE-DEVKRLGWQQQAELQELEERLQlQFEAEMARLQEEHGDQLLSIRcqhqeqveDLTASHDAALLE 353
Cdd:pfam15921 591 EKAQLEKEINDRRLElQEFKILKDKKDAKIRELEARVS-DLELEKVKLVNAGSERLRAVK--------DIKQERDQLLNE 661
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 354 ME------NNHTVAITILQDDHDHKVQELMSTHelekkeleenfEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNT 427
Cdd:pfam15921 662 VKtsrnelNSLSEDYEVLKRNFRNKSEEMETTT-----------NKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAM 730
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 428 EEQLEIALAPYQ--HLEEDMKSLKQVLEMKNQQIH----EQEKKILELEKLAEKNIILEEKIQVLQQQNEDLKARIDQNT 501
Cdd:pfam15921 731 GMQKQITAKRGQidALQSKIQFLEEAMTNANKEKHflkeEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 767977527 502 VVTRQLSEENANLQEYVEKETQEKKRLSRTNEELLWKLQTGDPTSPIKLSP 552
Cdd:pfam15921 811 VALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNSSVKP 861
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
298-541 |
4.36e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 4.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 298 QQQAELQELEERLQlQFEAEMARLQEE--HGDQLLSircQHQEQVEDLTASHDAALLEMEnnhtvaitILQDDHDHKVQE 375
Cdd:TIGR02169 671 SEPAELQRLRERLE-GLKRELSSLQSElrRIENRLD---ELSQELSDASRKIGEIEKEIE--------QLEQEEEKLKER 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 376 LmsthelekkeleenfEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQLEIAlAPYQHL-EEDMKSLKQVLEM 454
Cdd:TIGR02169 739 L---------------EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN-DLEARLsHSRIPEIQAELSK 802
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 455 KNQQIHEQEKKILELE----KLAEKNIILEEKIQVLQQQNEDLKARIDQN---------------------TVVTRQLSE 509
Cdd:TIGR02169 803 LEEEVSRIEARLREIEqklnRLTLEKEYLEKEIQELQEQRIDLKEQIKSIekeienlngkkeeleeeleelEAALRDLES 882
|
250 260 270
....*....|....*....|....*....|..
gi 767977527 510 ENANLQEYVEKETQEKKRLSRTNEELLWKLQT 541
Cdd:TIGR02169 883 RLGDLKKERDELEAQLRELERKIEELEAQIEK 914
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
253-538 |
5.08e-05 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 223496 [Multi-domain] Cd Length: 908 Bit Score: 46.29 E-value: 5.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 253 EKELSIELANIRDEVAFHTAKCEKLQKEKEELERRFEdevKRLGWQQQAELQELEERLQ-LQFEAEMARLQEEHGDQLLS 331
Cdd:COG0419 514 EEELIELLELEEALKEELEEKLEKLENLLEELEELKE---KLQLQQLKEELRQLEDRLQeLKELLEELRLLRTRKEELEE 590
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 332 IRcQHQEQVEDLTASHDAALLEMENNHTvAITILQDDHDHKVQELMSTHELEKKELEENFEKLRLSLQDQVDT--LTFQS 409
Cdd:COG0419 591 LR-ERLKELKKKLKELEERLSQLEELLQ-SLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEkvEELEA 668
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 410 QSLRDRARRFEEALRKNTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQ 489
Cdd:COG0419 669 EIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEEL 748
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 767977527 490 NEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNEELLWK 538
Cdd:COG0419 749 REKLGKAGLRADILRNLLAQIEAEANEILSKLSLNRYDLRRLTIRKDGN 797
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
195-499 |
1.11e-04 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 45.09 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 195 QAREAERQLvLRLKERCEQQTRQLGVAQG---ELKRAICGFDALAVATQHFFRKNESALVKEKElsiELANIRDEVAFHT 271
Cdd:COG1196 710 QLEELERQL-EELKRELAALEEELEQLQSrleELEEELEELEEELEELQERLEELEEELESLEE---ALAKLKEEIEELE 785
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 272 AKCEKLQKEKEELERRFEdEVKRLGWQQQAELQELEERLQlQFEAEMARLQEEHgDQLLSIRCQHQEQVEDLTASHDAAL 351
Cdd:COG1196 786 EKRQALQEELEELEEELE-EAERRLDALERELESLEQRRE-RLEQEIEELEEEI-EELEEKLDELEEELEELEKELEELK 862
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 352 LEMENnHTVAITILQDDHDHKVQELMStheleKKELEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQL 431
Cdd:COG1196 863 EELEE-LEAEKEELEDELKELEEEKEE-----LEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELE 936
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767977527 432 EIALAPY--------QHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKniiLEEKIQVLQQQNEDLKARIDQ 499
Cdd:COG1196 937 EEYEDTLetelereiERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQRED---LEEAKEKLLEVIEELDKEKRE 1009
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
252-535 |
1.12e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 252 KEKElsIELANIRDEVAFHTAKCEKLQKEKEELERRFEdevkrlgwQQQAELQELEERLQlQFEAEMARLQEEHgDQLLS 331
Cdd:TIGR04523 366 EEKQ--NEIEKLKKENQSYKQEIKNLESQINDLESKIQ--------NQEKLNQQKDEQIK-KLQQEKELLEKEI-ERLKE 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 332 IRCQHQEQVEDLTaSHDAALLEMENNH--------------TVAITILQDDHDHKVQELMSTHELEKKELEENFEklrls 397
Cdd:TIGR04523 434 TIIKNNSEIKDLT-NQDSVKELIIKNLdntresletqlkvlSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKE----- 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 398 LQDQVDTLTFQSQSLRDRARRFE-EALRKNTEeqleialapYQHLEEDMKSLKQVLEMKN--QQIHEQEKKILEL----E 470
Cdd:TIGR04523 508 LEEKVKDLTKKISSLKEKIEKLEsEKKEKESK---------ISDLEDELNKDDFELKKENleKEIDEKNKEIEELkqtqK 578
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767977527 471 KLAEKNIILEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNEEL 535
Cdd:TIGR04523 579 SLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKL 643
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
254-533 |
1.17e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 254 KELSIELANIRDEVAFHTAKCEKLQKEKEELERRFEDEVKRLGWQQQAE-LQELEERLqlqfeaemarlqEEHGDQLLSI 332
Cdd:PRK03918 455 EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEqLKELEEKL------------KKYNLEELEK 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 333 RCQHQEQVEDLtashdaaLLEMENNhtvaITILQDDHDhKVQELMStHELEKKELEENFEKLRLSLQDQVDTLTFQS-QS 411
Cdd:PRK03918 523 KAEEYEKLKEK-------LIKLKGE----IKSLKKELE-KLEELKK-KLAELEKKLDELEEELAELLKELEELGFESvEE 589
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 412 LRDRARRFEEALR-----KNTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILEL---------EKLAEKNI 477
Cdd:PRK03918 590 LEERLKELEPFYNeylelKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELekkyseeeyEELREEYL 669
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 767977527 478 ILEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNE 533
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
196-534 |
1.63e-04 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 223496 [Multi-domain] Cd Length: 908 Bit Score: 44.75 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 196 AREAERQLVLR---LKERCEQQTRQLGVAQGELKRAICGFDALAVATQHFFRKNESALVKEKELSIELANIRDEVAFhta 272
Cdd:COG0419 151 SKPKERKEILDelfGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEE--- 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 273 kcEKLQKEKEELERRFEDEVKRLGWQQQAELQELEERlqlQFEAEMARLQEEHGDQLLSIRCQHQEQVEDLTASHD--AA 350
Cdd:COG0419 228 --EELEQEIEALEERLAELEEEKERLEELKARLLEIE---SLELEALKIREEELRELERLLEELEEKIERLEELEReiEE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 351 LLEMENNHTVAITILQDDHDH---------KVQELMSTHELEKKELEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEE 421
Cdd:COG0419 303 LEEELEGLRALLEELEELLEKlksleerleKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 422 aLRKNTEEQLEIALapyQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQ---QQNEDLKARID 498
Cdd:COG0419 383 -RLKQLEEAIQELK---EELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLEskeLMIAELAGAGE 458
|
330 340 350
....*....|....*....|....*....|....*...
gi 767977527 499 QNTVVTRQLSEENA-NLQEYVEKETQE-KKRLSRTNEE 534
Cdd:COG0419 459 KCPVCGQELPEEHEkELLELYELELEElEEELSREKEE 496
|
|
| PHA03381 |
PHA03381 |
tegument protein VP22; Provisional |
37-182 |
1.64e-04 |
|
tegument protein VP22; Provisional
Pssm-ID: 177618 [Multi-domain] Cd Length: 290 Bit Score: 43.85 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 37 PQSPAPSPGTVHSQSRAG--QPPEFHLNGTMQYVVSFVWHLSLMLLrlICLVAGSTFGNEEQPVLKASLPSKDTP----K 110
Cdd:PHA03381 25 FISPDASPARVSFEEPADraRRGAGQARGRSQAERRFHHYDEARAD--YPYYTGSSSEDERPADPRPSRRPHAQPeasgP 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 111 GAGRVAPPASSSVTAPRRSLLPAPKSTSTPAG-----TKKDAQKDQDT--NKPAVSSPKRV---AASTTKLHSPGYPKQR 180
Cdd:PHA03381 103 GPARGARGPAGSRGRGRRAESPSPRDPPNPKGasaprGRKSACADSAAllDAPAPAAPKRQktpAGLARKLHFSTAPTSP 182
|
..
gi 767977527 181 TA 182
Cdd:PHA03381 183 TA 184
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
242-541 |
2.07e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 242 FFRKNESAL-------VKEKELSIELANIRDEVafhtakcEKLQKEKEELERrFEDEVKRL----GWQQQAELQELEERL 310
Cdd:TIGR02169 168 FDRKKEKALeeleeveENIERLDLIIDEKRQQL-------ERLRREREKAER-YQALLKEKreyeGYELLKEKEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 311 QlQFEAEMARLQEEhgdqllsircqhqeqVEDLTASHDAALLEMEnnhtvAITILQDDHDHKVQELMSTHELEKKELEEN 390
Cdd:TIGR02169 240 E-AIERQLASLEEE---------------LEKLTEEISELEKRLE-----EIEQLLEELNKKIKDLGEEEQLRVKEKIGE 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 391 FEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTE--EQLEIALAPYQ----HLEEDMKSLKQVLEMKNQqiheqek 464
Cdd:TIGR02169 299 LEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAeiEELEREIEEERkrrdKLTEEYAELKEELEDLRA------- 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 465 kilELEKLAEKNIILEEKIQVLQQQNEDLKARI-------DQNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNEELLW 537
Cdd:TIGR02169 372 ---ELEEVDKEFAETRDELKDYREKLEKLKREInelkrelDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAL 448
|
....
gi 767977527 538 KLQT 541
Cdd:TIGR02169 449 EIKK 452
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
420-549 |
3.35e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.46 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 420 EEALRKNTEEQLEialapyQHLEEDMKSLKQV-----------LEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQ 488
Cdd:PHA02562 108 ESASSKDFQKYFE------QMLGMNYKSFKQIvvlgtagyvpfMQLSAPARRKLVEDLLDISVLSEMDKLNKDKIRELNQ 181
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767977527 489 QNEDLKARID--------QNTVVTRQLSEENANLQEY-------VEKETQEKKRLSRTNEELL-WKLQTGDPTSPIK 549
Cdd:PHA02562 182 QIQTLDMKIDhiqqqiktYNKNIEEQRKKNGENIARKqnkydelVEEAKTIKAEIEELTDELLnLVMDIEDPSAALN 258
|
|
| Lipoprotein_7 |
pfam01540 |
Adhesin lipoprotein; This family consists of the p50 and variable adherence-associated antigen ... |
425-540 |
3.47e-04 |
|
Adhesin lipoprotein; This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50-kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host. p50 is also a 50-kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191-kDa in its native environment.
Pssm-ID: 110537 [Multi-domain] Cd Length: 353 Bit Score: 43.15 E-value: 3.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 425 KNTEEQLEIALAPYQHLEEDMKS---LKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDLKARIDQNT 501
Cdd:pfam01540 35 KNGKEKADAALKQANALAEELKKnpdYSKILETLNKEIAEATKSFKEAGSYGDYPAIISKLSAAVENAKNEKKAIDDKNA 114
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 767977527 502 VVTRQLSEENANLQEYVE---KETQEKKRLSRTNEELLWKLQ 540
Cdd:pfam01540 115 QIAKELAERNAKIQSNIEelkKINNEAFELSKTVNKTIAEVE 156
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
207-535 |
3.64e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 3.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 207 LKERCEQQ---TRQLGVAQGELKRAICGFDALAVATQhFFRKNESALVKEKELSIELANIRDE------VAFHTAKC--- 274
Cdd:pfam05483 284 LKELIEKKdhlTKELEDIKMSLQRSMSTQKALEEDLQ-IATKTICQLTEEKEAQMEELNKAKAahsfvvTEFEATTCsle 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 275 EKLQKEKEELERRfEDEVKRLGWQQQAELQELEERLQLQF--EAEMARLQEEHGDQ--LLSIRCQHQEQVEDLTASHDAA 350
Cdd:pfam05483 363 ELLRTEQQRLEKN-EDQLKIITMELQKKSSELEEMTKFKNnkEVELEELKKILAEDekLLDEKKQFEKIAEELKGKEQEL 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 351 LLEME------NNHTVAITILQDDHDHKVQELMSTHELEKKELEENFEklrlsLQDQVDTLTFQSQSLRDRARRFEEALR 424
Cdd:pfam05483 442 IFLLQarekeiHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIE-----LTAHCDKLLLENKELTQEASDMTLELK 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 425 K------NTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKI-LELEKLAEKNIILEEKIQVLQQQNEDLKARI 497
Cdd:pfam05483 517 KhqediiNCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVkCKLDKSEENARSIEYEVLKKEKQMKILENKC 596
|
330 340 350
....*....|....*....|....*....|....*...
gi 767977527 498 DQntvVTRQLSEENANLQEYVEKETQEKKRLSRTNEEL 535
Cdd:pfam05483 597 NN---LKKQIENKNKNIEELHQENKALKKKGSAENKQL 631
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
410-534 |
6.03e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 6.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 410 QSLRDRARRFEEALRKNTEEQLEIALapyQHLEEDMKSLKQVLEmknQQIHEQEKKILELEK-LAEKNIILEEKIQVLQQ 488
Cdd:PRK12704 34 KEAEEEAKRILEEAKKEAEAIKKEAL---LEAKEEIHKLRNEFE---KELRERRNELQKLEKrLLQKEENLDRKLELLEK 107
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 767977527 489 QNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSR-TNEE 534
Cdd:PRK12704 108 REEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGlTAEE 154
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
443-535 |
6.34e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 6.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 443 EDMKSLKQVLEMKNQQIHEQ-EKKILELEKLAEKNIILEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKE 521
Cdd:TIGR04523 345 SQLKKELTNSESENSEKQRElEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELL 424
|
90
....*....|....
gi 767977527 522 TQEKKRLSRTNEEL 535
Cdd:TIGR04523 425 EKEIERLKETIIKN 438
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
243-524 |
7.59e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 7.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 243 FRKNESALVKEKELSIELANIRDEV-AFHTAKCEKLQKEKEELERRF---EDEVKRLGwQQQAELQELEERLQLqFEAEM 318
Cdd:PRK03918 488 VLKKESELIKLKELAEQLKELEEKLkKYNLEELEKKAEEYEKLKEKLiklKGEIKSLK-KELEKLEELKKKLAE-LEKKL 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 319 ARLQEEHGDQLLSIRCQHQEQVEDLtashDAALLEMENNHTVAITILQDDHDHKVQElmsthelekkeleENFEKLRLSL 398
Cdd:PRK03918 566 DELEEELAELLKELEELGFESVEEL----EERLKELEPFYNEYLELKDAEKELEREE-------------KELKKLEEEL 628
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 399 QDQVDTLTFQSQSLRDRARRFEEALRKNTEEQleialapYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNII 478
Cdd:PRK03918 629 DKAFEELAETEKRLEELRKELEELEKKYSEEE-------YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 767977527 479 LEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQE 524
Cdd:PRK03918 702 ELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGE 747
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
192-534 |
8.55e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 8.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 192 PDPQAREAERQLVLRLKERCEQQTRQLGVAQGELKRAIcgfDALAVATQHFFRKNESALVKEKELSIELANIRDEVAFHT 271
Cdd:PRK02224 307 ADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEA---ESLREDADDLEERAEELREEAAELESELEEAREAVEDRR 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 272 AKCEKLQKEKEELERRFEDEVKRLGWQQ--------------------QAELQELEERLqlqfeAEMARLQEE------- 324
Cdd:PRK02224 384 EEIEELEEEIEELRERFGDAPVDLGNAEdfleelreerdelrereaelEATLRTARERV-----EEAEALLEAgkcpecg 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 325 -------HGDQLLSIRcqhqEQVEDLTASHDAALLEMENnhtvaitiLQDDHDhKVQELMSTHEL--EKKELEENFEKLR 395
Cdd:PRK02224 459 qpvegspHVETIEEDR----ERVEELEAELEDLEEEVEE--------VEERLE-RAEDLVEAEDRieRLEERREDLEELI 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 396 LSLQDQVDTLTFQSQSLRDRArrfeEALRKNTEEQLEIAlapyQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEK 475
Cdd:PRK02224 526 AERRETIEEKRERAEELRERA----AELEAEAEEKREAA----AEAEEEAEEAREEVAELNSKLAELKERIESLERIRTL 597
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767977527 476 NIILEEKIQVLQQQNEDLKARIDQNTVVTRQLSEEN---ANLQEYVEKETQEKKRLSRTNEE 534
Cdd:PRK02224 598 LAAIADAEDEIERLREKREALAELNDERRERLAEKRerkRELEAEFDEARIEEAREDKERAE 659
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
426-532 |
8.97e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.21 E-value: 8.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 426 NTEEQLEIALAPYQHLEEDMKSLKQVL-----EMKNQQIHEQEKKILEL-EKLAEKNIILEEKiQVLQQQNEDLKARIDQ 499
Cdd:PRK11281 198 QAEQALLNAQNDLQRKSLEGNTQLQDLlqkqrDYLTARIQRLEHQLQLLqEAINSKRLTLSEK-TVQEAQSQDEAARIQA 276
|
90 100 110
....*....|....*....|....*....|...
gi 767977527 500 NTVVTRQLsEENANLQEYVEKETQEKKRLSRTN 532
Cdd:PRK11281 277 NPLVAQEL-EINLQLSQRLLKATEKLNTLTQQN 308
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
408-540 |
1.74e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 408 QSQSLRDRARRFEEALRKNTEE---QLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELE-KLAEKNII---LE 480
Cdd:TIGR02168 201 QLKSLERQAEKAERYKELKAELrelELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEeKLEELRLEvseLE 280
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 481 EKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNEELLWKLQ 540
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA 340
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
254-535 |
1.77e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 254 KELSIELANIRDEVafhtakcEKLQKEKEELERRFE--DEVKRLGWQQQAELQELEERLQlQFEAEMARLQEEHGDQlls 331
Cdd:PRK03918 210 NEISSELPELREEL-------EKLEKEVKELEELKEeiEELEKELESLEGSKRKLEEKIR-ELEERIEELKKEIEEL--- 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 332 ircqhQEQVEDLTAshdaalLEMENNHTVAITILQDDHDHKVQELmsthelekKELEENFEKLRLSLQDQVDTLTFQSQS 411
Cdd:PRK03918 279 -----EEKVKELKE------LKEKAEEYIKLSEFYEEYLDELREI--------EKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 412 LRDRARRFEEALRKNTEeqleiaLAPYQHLEEDMKSLKQVLE-----MKNQQIHEQEKKILELEK----LAEKNIILEEK 482
Cdd:PRK03918 340 LEELKKKLKELEKRLEE------LEERHELYEEAKAKKEELErlkkrLTGLTPEKLEKELEELEKakeeIEEEISKITAR 413
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 483 IQVLQQQNEDLKARIDQ-------NTVVTRQLSEENAnlQEYVEKETQEKKRLSRTNEEL 535
Cdd:PRK03918 414 IGELKKEIKELKKAIEElkkakgkCPVCGRELTEEHR--KELLEEYTAELKRIEKELKEI 471
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
63-200 |
2.07e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 41.08 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 63 GTMQYVVSFVWHLSLMLLRLICLVAGSTfgnEEQPVLKASLPSKDT-----PKGAGRVAPPASSSVTAPRRSLLPAPKST 137
Cdd:PRK14954 351 GELKFQFEYQFRFELALLRLIELVRNDG---GVAPSPAGSPDVKKKapepdLPQPDRHPGPAKPEAPGARPAELPSPASA 427
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767977527 138 STPAGTKKDAQKDQDTNKPAVSSPKRVAASTTKLHSPGYPKQRTAAARNGFPPKPdPQAREAE 200
Cdd:PRK14954 428 PTPEQQPPVARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQP-VQASSSD 489
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
97-199 |
2.81e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 40.69 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 97 PVLKASLPSKDTPKGAGRVAPPASSSVTAPRRslLPAPKSTSTPAGTKKDAQKDQDTNKPAVSSPKRVAASTTKLHSPGY 176
Cdd:PHA03247 2751 PGGPARPARPPTTAGPPAPAPPAAPAAGPPRR--LTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL 2828
|
90 100
....*....|....*....|...
gi 767977527 177 PKQRTAAARNGFPPKPDPQAREA 199
Cdd:PHA03247 2829 PPPTSAQPTAPPPPPGPPPPSLP 2851
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
362-541 |
2.84e-03 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 223496 [Multi-domain] Cd Length: 908 Bit Score: 40.51 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 362 ITILQDDHDHKVQELMSTHELEKKELEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEEaLRKNTEEQLEIALAPYQHL 441
Cdd:COG0419 194 LSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEE-LKARLLEIESLELEALKIR 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 442 EEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKE 521
Cdd:COG0419 273 EEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEK 352
|
170 180
....*....|....*....|
gi 767977527 522 TQEKKRLSRTNEELLWKLQT 541
Cdd:COG0419 353 NELAKLLEERLKELEERLEE 372
|
|
| Jnk-SapK_ap_N |
pfam09744 |
JNK_SAPK-associated protein-1; This is the N-terminal 200 residues of a set of proteins ... |
426-533 |
3.07e-03 |
|
JNK_SAPK-associated protein-1; This is the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have an RhoGEF pfam00621 domain at their C-terminal end.
Pssm-ID: 430795 [Multi-domain] Cd Length: 156 Bit Score: 38.39 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 426 NTEEQLEIALAPYQHLEEDMKSLKQVLEmknQQIHEQEKKIlELEKLAEKNiiLEEKIQVLQQQNEDLKARIDQNTVVTR 505
Cdd:pfam09744 33 NVLELLESLASRNQEHNVELEELREDNE---QLETQYEREK-QLRKRAEEE--LEEIEDQWEQETKDLQSQVEQLEEENR 106
|
90 100 110
....*....|....*....|....*....|..
gi 767977527 506 QLSEENANLQEYV----EKETQEKKRLSRTNE 533
Cdd:pfam09744 107 RLELKAKNYADHVsrleEKEAELKKEYSKLHE 138
|
|
| CCDC14 |
pfam15254 |
Coiled-coil domain-containing protein 14; This protein family, Coiled-coil domain-containing ... |
426-543 |
3.09e-03 |
|
Coiled-coil domain-containing protein 14; This protein family, Coiled-coil domain-containing protein 14 (CCDC14) is a domain of unknown function. This family of proteins is found in eukaryotes. Proteins in this family are typically between 301 and 912 amino acids in length.
Pssm-ID: 434576 Cd Length: 867 Bit Score: 40.53 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 426 NTEEQLEIALApYQHLEEDMKSLKQVLEMKNQQIHEQEKKI---------LELEKLAEKNIILEEKIQVLQQQNEDLKAR 496
Cdd:pfam15254 384 NTNIQVEIALA-LQPLRSENAQLRRRLRILNQQLREQEKTEktsgsldcnFELISLQSLNMSLQNQLQESLKSQELLQSK 462
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 767977527 497 idqntvvtrqlseeNANLQEYVEKETQEKKRLSRT----NEELLWKLQTGD 543
Cdd:pfam15254 463 --------------NEELLKVIENQKEENKKLTKIfkekDQTLLENKQQFD 499
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
451-541 |
3.97e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.00 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 451 VLEMKNQQIHEQEKKILELEKlaeKNIILEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSR 530
Cdd:TIGR04523 205 NLKKKIQKNKSLESQISELKK---QNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNK 281
|
90
....*....|.
gi 767977527 531 TNEELLWKLQT 541
Cdd:TIGR04523 282 KIKELEKQLNQ 292
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
252-471 |
4.35e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.02 E-value: 4.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 252 KEKELSIELANIRDEVAFHTAKCEKLQKEKEELERRFEDEVKRLG--WQQQAELQELEERLQLQFE--AEMARLQEEHGD 327
Cdd:PRK02224 200 EEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEehEERREELETLEAEIEDLREtiAETEREREELAE 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 328 QLLSircqHQEQVEDLtashdaallEMENNHTVAITILQDDHDHKVQELMSTHELEKKELEENFEKLRLSLQDqvdtLTF 407
Cdd:PRK02224 280 EVRD----LRERLEEL---------EEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQA----HNE 342
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767977527 408 QSQSLRDRARRFEEALRKNTEEQLEialapyqhLEEDMKSLKQVLEMKNQQIHEQEKKILELEK 471
Cdd:PRK02224 343 EAESLREDADDLEERAEELREEAAE--------LESELEEAREAVEDRREEIEELEEEIEELRE 398
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
392-536 |
4.71e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 4.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 392 EKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQLEIALA------PYQHLEEDMKSLKQVLEMKNQQIHEQEKK 465
Cdd:TIGR02168 252 EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEisrleqQKQILRERLANLERQLEELEAQLEELESK 331
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767977527 466 ILEL-EKLAEkniiLEEKIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEyvEKETQEKKRLSRTNEELL 536
Cdd:TIGR02168 332 LDELaEELAE----LEEKLEELKEELESLEAELEELEAELEELESRLEELEE--QLETLRSKVAQLELQIAS 397
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
260-541 |
5.82e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 39.57 E-value: 5.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 260 LANIRDEVAFHTAKCEKLQKEKEELERRFEDEVKRLGWQQQA-ELQELEERLQLQfEAEMARLQEEhgdqlLSIRCQHQE 338
Cdd:TIGR00618 221 KQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLkQLRARIEELRAQ-EAVLEETQER-----INRARKAAP 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 339 QVEdltasHDAALLEMENNHTVAITILQDDHDHKVQELMsthelekkeLEENFEKLRLSLQDQVDTL-TFQSQSLRDRAR 417
Cdd:TIGR00618 295 LAA-----HIKAVTQIEQQAQRIHTELQSKMRSRAKLLM---------KRAAHVKQQSSIEEQRRLLqTLHSQEIHIRDA 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 418 RFEEALRKnteEQLEIALAPYQHLeedmKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDLKARI 497
Cdd:TIGR00618 361 HEVATSIR---EISCQQHTLTQHI----HTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQ 433
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 767977527 498 D---QNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNEELLWKLQT 541
Cdd:TIGR00618 434 ElqqRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQ 480
|
|
| COG4487 |
COG4487 |
Uncharacterized protein, contains DUF2130 domain [Function unknown]; |
299-514 |
6.19e-03 |
|
Uncharacterized protein, contains DUF2130 domain [Function unknown];
Pssm-ID: 226889 [Multi-domain] Cd Length: 438 Bit Score: 39.03 E-value: 6.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 299 QQAELQELEERLQLQFEAEMARLQEEHGDQLLSIRCQHQEQVEDLTASHDAALLEMENNHTVAITILqddhDHKVQELMS 378
Cdd:COG4487 25 EQARYKQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQF----ELALQDEIA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 379 THELEKKELEENfEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQLEIALAPYQHLEEDMKSLKQVLEmknQQ 458
Cdd:COG4487 101 KLEALELLNLEK-DKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFE---EQ 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 767977527 459 IHEQEKKILELEKlaekniilEEKIQVLQQQNEDLKARIDQ--NTVVTRQLSEENANL 514
Cdd:COG4487 177 LHEANLDLEFKEN--------EEQRESKWAILKKLKRRAELgsQQVQGEALELPNESF 226
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
287-543 |
6.91e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 39.57 E-value: 6.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 287 RFEDEVKRLGWQQQ---AELQELEERLQlQFEAEMARLQEEHgDQLLSIRCQHQEQVEDLTASHDAALLEMENNHTVAIT 363
Cdd:TIGR00618 532 RGEQTYAQLETSEEdvyHQLTSERKQRA-SLKEQMQEIQQSF-SILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDM 609
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 364 ILQDDHDHKVQELMSTHELEKKELEENFEK----LRLSLQDQVDTLTFQSQSLRDRARRFEEALRKnteEQLEIALAPYQ 439
Cdd:TIGR00618 610 LACEQHALLRKLQPEQDLQDVRLHLQQCSQelalKLTALHALQLTLTQERVREHALSIRVLPKELL---ASRQLALQKMQ 686
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 440 HLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKniileekiqvLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVE 519
Cdd:TIGR00618 687 SEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNE----------IENASSSLGSDLAAREDALNQSLKELMHQARTVL 756
|
250 260
....*....|....*....|....
gi 767977527 520 KETQEKKrlSRTNEELLWKLQTGD 543
Cdd:TIGR00618 757 KARTEAH--FNNNEEVTAALQTGA 778
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
178-534 |
8.18e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 39.05 E-value: 8.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 178 KQRTAAARNGFPPKPDPQAREAErqlvlrLKERCEQQTRQLGVAQGELKRAICGFDALAVATQHffrknESALVKEKELS 257
Cdd:pfam12128 401 KIREARDRQLAVAEDDLQALESE------LREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATA-----TPELLLQLENF 469
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 258 IELAN-IRDEVAFHTAKCEKLQKEKEELERRFEDEVKRLG------WQQQAELQELEERLQ------LQFEAEMARLQEE 324
Cdd:pfam12128 470 DERIErAREEQEAANAEVERLQSELRQARKRRDQASEALRqasrrlEERQSALDELELQLFpqagtlLHFLRKEAPDWEQ 549
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 325 HGDQLLSIRCQHQeqvEDLTASHDAALLEMENN-HTVAITILQDDHDHKVQelmsthelekkeleenfekLRLSLQDQVD 403
Cdd:pfam12128 550 SIGKVISPELLHR---TDLDPEVWDGSVGGELNlYGVKLDLKRIDVPEWAA-------------------SEEELRERLD 607
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 404 TLTFQSQSLRDRARRFEEAL---RKNTEEQ---LEIALAPYQHLEEDMKSL---KQVLEMKNQQIHEQEKKIL--ELEKL 472
Cdd:pfam12128 608 KAEEALQSAREKQAAAEEQLvqaNGELEKAsreETFARTALKNARLDLRRLfdeKQSEKDKKNKALAERKDSAneRLNSL 687
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767977527 473 -AEKNIILEEKIQVLQQQNEDLK----ARIDQNTVVTRQLSEENANLQEYVEK-ETQEKKRLSRTNEE 534
Cdd:pfam12128 688 eAQLKQLDKKHQAWLEEQKEQKReartEKQAYWQVVEGALDAQLALLKAAIAArRSGAKAELKALETW 755
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
195-496 |
8.89e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.17 E-value: 8.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 195 QAREAErQLVLRLKERC--------EQQTR--QLGVAQGELKRA--ICGFDALAV----ATQHFFRKNESALVK-----E 253
Cdd:PRK04863 384 RAEAAE-EEVDELKSQLadyqqaldVQQTRaiQYQQAVQALERAkqLCGLPDLTAdnaeDWLEEFQAKEQEATEellslE 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 254 KELSI-ELANIRDEVAFHTAKC-------EKLQKEKEELERRFEDEVKRLGWQQQ--AELQELEERLQLQFEAEmaRLQE 323
Cdd:PRK04863 463 QKLSVaQAAHSQFEQAYQLVRKiagevsrSEAWDVARELLRRLREQRHLAEQLQQlrMRLSELEQRLRQQQRAE--RLLA 540
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 324 EHGdQLLSIRCQHQEQVEDLTASHDAALlemennhtvaitilqDDHDHKVQELmsthelekkeleenfEKLRLSLQDQVD 403
Cdd:PRK04863 541 EFC-KRLGKNLDDEDELEQLQEELEARL---------------ESLSESVSEA---------------RERRMALRQQLE 589
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 404 TLTFQSQSLRDRARRFEEAlrKNTEEQLeialapYQHLEEDMKSLKQVLE-MKNQQIHEQEkkilelekLAEKNIILEEK 482
Cdd:PRK04863 590 QLQARIQRLAARAPAWLAA--QDALARL------REQSGEEFEDSQDVTEyMQQLLERERE--------LTVERDELAAR 653
|
330
....*....|....
gi 767977527 483 IQVLQQQNEDLKAR 496
Cdd:PRK04863 654 KQALDEEIERLSQP 667
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
276-535 |
9.93e-03 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 38.93 E-value: 9.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 276 KLQKEKEELERRFEDEVKRLGwQQQAELQELEERLQ-LQFEAEMARlqeehgdqllsircQHQEQVEDLTAsHDAALLEM 354
Cdd:COG1196 169 KYKERKEEAERKLERTEENLE-RLEDLLEELEKQLEkLERQAEKAE--------------RYQELKAELRE-LELALLLA 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 355 EnnhtvaitilQDDHDHKVQELMStHELEKKELEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQLEia 434
Cdd:COG1196 233 K----------LKELRKELEELEE-ELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEE-- 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767977527 435 lapyqhLEEDMKSLKQvlemknqqihEQEKKILELEKLAEKNIILEEKIQVLQQQNE-------DLKARIDQNTVVTRQL 507
Cdd:COG1196 300 ------LEGEISLLRE----------RLEELENELEELEERLEELKEKIEALKEELEeretlleELEQLLAELEEAKEEL 363
|
250 260
....*....|....*....|....*....
gi 767977527 508 SEENANLQEYVEKETQE-KKRLSRTNEEL 535
Cdd:COG1196 364 EEKLSALLEELEELFEAlREELAELEAEL 392
|
|
|