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Conserved domains on  [gi|768021580|ref|XP_011528031|]
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trafficking protein particle complex subunit 10 isoform X17 [Homo sapiens]

Protein Classification

TRAPPC10 domain-containing protein (domain architecture ID 10576372)

TRAPPC10 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TRAPPC10 pfam12584
Trafficking protein particle complex subunit 10, TRAPPC10; This domain forms part of the TRAPP ...
717-945 1.96e-38

Trafficking protein particle complex subunit 10, TRAPPC10; This domain forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1.


:

Pssm-ID: 315292  Cd Length: 152  Bit Score: 140.20  E-value: 1.96e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768021580  717 EPPPSLHCRFSVGFSPASEEQLSISlkpytyefkvenfftlynvkaeifpPSGMEYCRTGSLCSLEVLITRLSDLLEVDK 796
Cdd:pfam12584   1 VDVPSVQVVHTADLRLLSQPSTSRS-------------------------PSGATHCRVGQPISAELSIRTTRRWSSPAT 55
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768021580  797 DEAltesdEHFSTKLMYEVVDNSSNWAVCGKSCGVISMpvAARATHRVHMEVMPLFAGYLPLPDVRLFKYLPHHsahssq 876
Cdd:pfam12584  56 REA-----ANRTLELMYEIVANPDTWLVGGKRRGNFSA--KEGESHTIPLTLIPLRAGHLPLPKVEVKAYVPHS------ 122
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 768021580  877 ldadswiendslsvdkhgddqpdssslksrgsvhsacssEHKGLPMPRLQALPAGQVFNSSSGTQVLVI 945
Cdd:pfam12584 123 ---------------------------------------KSQGDTMPRSRRPPPCEVDYRNHGEQVLVL 152
 
Name Accession Description Interval E-value
TRAPPC10 pfam12584
Trafficking protein particle complex subunit 10, TRAPPC10; This domain forms part of the TRAPP ...
717-945 1.96e-38

Trafficking protein particle complex subunit 10, TRAPPC10; This domain forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1.


Pssm-ID: 315292  Cd Length: 152  Bit Score: 140.20  E-value: 1.96e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768021580  717 EPPPSLHCRFSVGFSPASEEQLSISlkpytyefkvenfftlynvkaeifpPSGMEYCRTGSLCSLEVLITRLSDLLEVDK 796
Cdd:pfam12584   1 VDVPSVQVVHTADLRLLSQPSTSRS-------------------------PSGATHCRVGQPISAELSIRTTRRWSSPAT 55
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768021580  797 DEAltesdEHFSTKLMYEVVDNSSNWAVCGKSCGVISMpvAARATHRVHMEVMPLFAGYLPLPDVRLFKYLPHHsahssq 876
Cdd:pfam12584  56 REA-----ANRTLELMYEIVANPDTWLVGGKRRGNFSA--KEGESHTIPLTLIPLRAGHLPLPKVEVKAYVPHS------ 122
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 768021580  877 ldadswiendslsvdkhgddqpdssslksrgsvhsacssEHKGLPMPRLQALPAGQVFNSSSGTQVLVI 945
Cdd:pfam12584 123 ---------------------------------------KSQGDTMPRSRRPPPCEVDYRNHGEQVLVL 152
 
Name Accession Description Interval E-value
TRAPPC10 pfam12584
Trafficking protein particle complex subunit 10, TRAPPC10; This domain forms part of the TRAPP ...
717-945 1.96e-38

Trafficking protein particle complex subunit 10, TRAPPC10; This domain forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1.


Pssm-ID: 315292  Cd Length: 152  Bit Score: 140.20  E-value: 1.96e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768021580  717 EPPPSLHCRFSVGFSPASEEQLSISlkpytyefkvenfftlynvkaeifpPSGMEYCRTGSLCSLEVLITRLSDLLEVDK 796
Cdd:pfam12584   1 VDVPSVQVVHTADLRLLSQPSTSRS-------------------------PSGATHCRVGQPISAELSIRTTRRWSSPAT 55
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768021580  797 DEAltesdEHFSTKLMYEVVDNSSNWAVCGKSCGVISMpvAARATHRVHMEVMPLFAGYLPLPDVRLFKYLPHHsahssq 876
Cdd:pfam12584  56 REA-----ANRTLELMYEIVANPDTWLVGGKRRGNFSA--KEGESHTIPLTLIPLRAGHLPLPKVEVKAYVPHS------ 122
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 768021580  877 ldadswiendslsvdkhgddqpdssslksrgsvhsacssEHKGLPMPRLQALPAGQVFNSSSGTQVLVI 945
Cdd:pfam12584 123 ---------------------------------------KSQGDTMPRSRRPPPCEVDYRNHGEQVLVL 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.17
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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