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Conserved domains on  [gi|767991578|ref|XP_011521943|]
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ubiquitin carboxyl-terminal hydrolase 43 isoform X2 [Homo sapiens]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 13432448)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
337-505 7.63e-66

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 220.24  E-value: 7.63e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 337 CTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHv 416
Cdd:cd02674   84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPY- 162
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 417 aqrstspeaglgpwpswkqpdCLPTSYPLDFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNT 496
Cdd:cd02674  163 ---------------------VDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVS 221

                 ....*....
gi 767991578 497 RGAYILFYQ 505
Cdd:cd02674  222 SSAYILFYE 230
UBP12 super family cl35019
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
32-508 3.67e-49

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5560:

Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 187.78  E-value: 3.67e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578  32 TWRVHPEGRCR---------RRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPilST 102
Cdd:COG5560  402 CWWEHLKRNDSiitdlfqgmYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDAS--ST 479
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 103 VAALRKMVAEEGGV-PADEVILVELYPSGFQRSFFDEED--LNTIAEGDNVYAFQVppspsqgtlsahplglsasprlaa 179
Cdd:COG5560  480 IRGLKKLVDAEYGKlGCFEIKVMCIYYGGNYNMLEPADKvlLQDIPQTDFVYLYET------------------------ 535
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 180 regqrfslslhSESKVLILFCNL-VGSGQQASR-FGPPFLiredravswaqlQQSILSKVRHLMKSEAPVQNLGSLFSIR 257
Cdd:COG5560  536 -----------NDNGIEVPVVHLrIEKGYKSKRlFGDPFL------------QLNVLIKASIYDKLVKEFEELLVLVEMK 592
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 258 V-----VGLSVACSYLSPKDSRPL-CHWAVDRvlhlRRPGGPPHVKLAVEWDSSVKERLFGSLQEERAQDADSVWQQQQ- 330
Cdd:COG5560  593 KtdvdlVSEQVRLLREESSPSSWLkLETEIDT----KREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPLWTIREi 668
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 331 AHQQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGL 410
Cdd:COG5560  669 GAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDL 748
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 411 NMAPHVaqrstspeaglGPWPSWKqpdclptsypldFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLR 490
Cdd:COG5560  749 DLSGVE-----------YMVDDPR------------LIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVD 805
                        490
                 ....*....|....*...
gi 767991578 491 EDEVNTRGAYILFYQKRN 508
Cdd:COG5560  806 PEDSVTSSAYVLFYRRKS 823
 
Name Accession Description Interval E-value
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
337-505 7.63e-66

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 220.24  E-value: 7.63e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 337 CTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHv 416
Cdd:cd02674   84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPY- 162
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 417 aqrstspeaglgpwpswkqpdCLPTSYPLDFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNT 496
Cdd:cd02674  163 ---------------------VDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVS 221

                 ....*....
gi 767991578 497 RGAYILFYQ 505
Cdd:cd02674  222 SSAYILFYE 230
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
32-508 3.67e-49

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 187.78  E-value: 3.67e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578  32 TWRVHPEGRCR---------RRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPilST 102
Cdd:COG5560  402 CWWEHLKRNDSiitdlfqgmYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDAS--ST 479
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 103 VAALRKMVAEEGGV-PADEVILVELYPSGFQRSFFDEED--LNTIAEGDNVYAFQVppspsqgtlsahplglsasprlaa 179
Cdd:COG5560  480 IRGLKKLVDAEYGKlGCFEIKVMCIYYGGNYNMLEPADKvlLQDIPQTDFVYLYET------------------------ 535
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 180 regqrfslslhSESKVLILFCNL-VGSGQQASR-FGPPFLiredravswaqlQQSILSKVRHLMKSEAPVQNLGSLFSIR 257
Cdd:COG5560  536 -----------NDNGIEVPVVHLrIEKGYKSKRlFGDPFL------------QLNVLIKASIYDKLVKEFEELLVLVEMK 592
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 258 V-----VGLSVACSYLSPKDSRPL-CHWAVDRvlhlRRPGGPPHVKLAVEWDSSVKERLFGSLQEERAQDADSVWQQQQ- 330
Cdd:COG5560  593 KtdvdlVSEQVRLLREESSPSSWLkLETEIDT----KREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPLWTIREi 668
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 331 AHQQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGL 410
Cdd:COG5560  669 GAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDL 748
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 411 NMAPHVaqrstspeaglGPWPSWKqpdclptsypldFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLR 490
Cdd:COG5560  749 DLSGVE-----------YMVDDPR------------LIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVD 805
                        490
                 ....*....|....*...
gi 767991578 491 EDEVNTRGAYILFYQKRN 508
Cdd:COG5560  806 PEDSVTSSAYVLFYRRKS 823
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
339-504 8.07e-42

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 155.68  E-value: 8.07e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578  339 LDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSgLNMAPHVAq 418
Cdd:pfam00443 164 LQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEFPLE-LDLSRYLA- 241
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578  419 rstsPEAGLGPWPSWKqpdclptsypldflYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLRED-EVNTR 497
Cdd:pfam00443 242 ----EELKPKTNNLQD--------------YRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEEtAVLSS 303

                  ....*..
gi 767991578  498 GAYILFY 504
Cdd:pfam00443 304 SAYILFY 310
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
352-506 2.80e-13

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 71.37  E-value: 2.80e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 352 LAQDDAWKcphcqVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRnKLSTLVKFPLsglNMaphvaqrSTSPEAGLGPWP 431
Cdd:COG5533  158 AKENEELE-----VQAKQEYEVSFVKLPKILTIQLKRFANLGGNQ-KIDTEVDEKF---EL-------PVKHDQILNIVK 221
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767991578 432 SwkqpdclptsypldFLYDLYAVCNHHGNLQGGHYTAYCRNslDGQWYSYDDSTVEPLREDE---VNTRGAYILFYQK 506
Cdd:COG5533  222 E--------------TYYDLVGFVLHQGSLEGGHYIAYVKK--GGKWEKANDSDVTPVSEEEainEKAKNAYLYFYER 283
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
44-81 6.97e-08

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 54.22  E-value: 6.97e-08
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 767991578  44 RSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTL 81
Cdd:cd02674   49 KSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVTL 86
 
Name Accession Description Interval E-value
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
337-505 7.63e-66

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 220.24  E-value: 7.63e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 337 CTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHv 416
Cdd:cd02674   84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPY- 162
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 417 aqrstspeaglgpwpswkqpdCLPTSYPLDFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNT 496
Cdd:cd02674  163 ---------------------VDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVS 221

                 ....*....
gi 767991578 497 RGAYILFYQ 505
Cdd:cd02674  222 SSAYILFYE 230
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
32-508 3.67e-49

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 187.78  E-value: 3.67e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578  32 TWRVHPEGRCR---------RRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPilST 102
Cdd:COG5560  402 CWWEHLKRNDSiitdlfqgmYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDAS--ST 479
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 103 VAALRKMVAEEGGV-PADEVILVELYPSGFQRSFFDEED--LNTIAEGDNVYAFQVppspsqgtlsahplglsasprlaa 179
Cdd:COG5560  480 IRGLKKLVDAEYGKlGCFEIKVMCIYYGGNYNMLEPADKvlLQDIPQTDFVYLYET------------------------ 535
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 180 regqrfslslhSESKVLILFCNL-VGSGQQASR-FGPPFLiredravswaqlQQSILSKVRHLMKSEAPVQNLGSLFSIR 257
Cdd:COG5560  536 -----------NDNGIEVPVVHLrIEKGYKSKRlFGDPFL------------QLNVLIKASIYDKLVKEFEELLVLVEMK 592
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 258 V-----VGLSVACSYLSPKDSRPL-CHWAVDRvlhlRRPGGPPHVKLAVEWDSSVKERLFGSLQEERAQDADSVWQQQQ- 330
Cdd:COG5560  593 KtdvdlVSEQVRLLREESSPSSWLkLETEIDT----KREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPLWTIREi 668
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 331 AHQQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGL 410
Cdd:COG5560  669 GAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDL 748
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 411 NMAPHVaqrstspeaglGPWPSWKqpdclptsypldFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLR 490
Cdd:COG5560  749 DLSGVE-----------YMVDDPR------------LIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVD 805
                        490
                 ....*....|....*...
gi 767991578 491 EDEVNTRGAYILFYQKRN 508
Cdd:COG5560  806 PEDSVTSSAYVLFYRRKS 823
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
339-504 8.07e-42

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 155.68  E-value: 8.07e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578  339 LDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSgLNMAPHVAq 418
Cdd:pfam00443 164 LQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEFPLE-LDLSRYLA- 241
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578  419 rstsPEAGLGPWPSWKqpdclptsypldflYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLRED-EVNTR 497
Cdd:pfam00443 242 ----EELKPKTNNLQD--------------YRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEEtAVLSS 303

                  ....*..
gi 767991578  498 GAYILFY 504
Cdd:pfam00443 304 SAYILFY 310
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
337-505 1.15e-39

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 147.63  E-value: 1.15e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 337 CTLDECFQFYTKEEQLAQDDAWKCPHCQvLQQGMVKLSLWTLPDILIIHLKRFCQVGE-RRNKLSTLVKFPLSgLNMAPH 415
Cdd:cd02257   99 VSLEDCLEKFFKEEILEGDNCYKCEKKK-KQEATKRLKIKKLPPVLIIHLKRFSFNEDgTKEKLNTKVSFPLE-LDLSPY 176
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 416 VAQRSTSPEAGLGPwpswkqpdclptsypldFLYDLYAVCNHHG-NLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEV 494
Cdd:cd02257  177 LSEGEKDSDSDNGS-----------------YKYELVAVVVHSGtSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEV 239
                        170
                 ....*....|....*.
gi 767991578 495 NTRG-----AYILFYQ 505
Cdd:cd02257  240 LEFGslsssAYILFYE 255
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
338-504 3.67e-35

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 136.73  E-value: 3.67e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 338 TLDECFQFYTKEEQLaQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQ-VGERRNKLSTLVKFPLSgLNMAPHv 416
Cdd:cd02660  177 TLSDCLDRFTRPEKL-GDFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHsLNKTSRKIDTYVQFPLE-LNMTPY- 253
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 417 aqrsTSPEAGlgpwpsWKQPDCLPTSyplDFLYDLYAVCNHHGNLQGGHYTAYCRNSlDGQWYSYDDSTVEPLREDEVNT 496
Cdd:cd02660  254 ----TSSSIG------DTQDSNSLDP---DYTYDLFAVVVHKGTLDTGHYTAYCRQG-DGQWFKFDDAMITRVSEEEVLK 319

                 ....*...
gi 767991578 497 RGAYILFY 504
Cdd:cd02660  320 SQAYLLFY 327
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
338-504 5.16e-28

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 115.07  E-value: 5.16e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 338 TLDECFQFYTKEEQLAQDDAWKCPHCQvlqqGMVK----LSLWTLPDILIIHLKRFcqVGERRNKLSTLVKFPLSgLNMA 413
Cdd:cd02661  163 SLEDALEQFTKPEQLDGENKYKCERCK----KKVKaskqLTIHRAPNVLTIHLKRF--SNFRGGKINKQISFPET-LDLS 235
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 414 PHVAQRSTSPeaglgpwpswkqpdclptsypldFLYDLYAVCNHHG-NLQGGHYTAYCRNSlDGQWYSYDDSTVEPLRED 492
Cdd:cd02661  236 PYMSQPNDGP-----------------------LKYKLYAVLVHSGfSPHSGHYYCYVKSS-NGKWYNMDDSKVSPVSIE 291
                        170
                 ....*....|..
gi 767991578 493 EVNTRGAYILFY 504
Cdd:cd02661  292 TVLSQKAYILFY 303
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
339-508 9.46e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 103.49  E-value: 9.46e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 339 LDECFQFYTKEEQLAQDDAWKCPHCQvLQQGMVK-LSLWTLPDILIIHLKRF--CQVGERRNKLSTLVKFPLSgLNMAPH 415
Cdd:cd02659  153 LEESLDAYVQGETLEGDNKYFCEKCG-KKVDAEKgVCFKKLPPVLTLQLKRFefDFETMMRIKINDRFEFPLE-LDMEPY 230
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 416 VaqrstspEAGLGPWPSWKQPDClptsyPLDFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEV- 494
Cdd:cd02659  231 T-------EKGLAKKEGDSEKKD-----SESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAe 298
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 767991578 495 -------NTRG--------------AYILFYQKRN 508
Cdd:cd02659  299 eecfggeETQKtydsgprafkrttnAYMLFYERKS 333
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
337-505 3.12e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 91.68  E-value: 3.12e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 337 CTLDECFQFYTKEEQLAQDDAWkcpHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERR-NKLSTLVKFPlSGLNMAPH 415
Cdd:cd02667  111 CSIESCLKQFTEVEILEGNNKF---ACENCTKAKKQYLISKLPPVLVIHLKRFQQPRSANlRKVSRHVSFP-EILDLAPF 186
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 416 VAQRSTSPEAGLgpwpswkqpdclptsyplDFLYDLYAVCNHHGNLQGGHYTAYCR------------NSLD-------- 475
Cdd:cd02667  187 CDPKCNSSEDKS------------------SVLYRLYGVVEHSGTMRSGHYVAYVKvrppqqrlsdltKSKPaadeagpg 248
                        170       180       190
                 ....*....|....*....|....*....|.
gi 767991578 476 -GQWYSYDDSTVEPLREDEVNTRGAYILFYQ 505
Cdd:cd02667  249 sGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
338-504 2.08e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 90.17  E-value: 2.08e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 338 TLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFC---QVGERRnKLSTLVKFPLSgLNMAP 414
Cdd:cd02668  157 TLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVfdrKTGAKK-KLNASISFPEI-LDMGE 234
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 415 HVAQRStspeaglgpwpswkqpdclptsyPLDFLYDLYAVCNHHGN-LQGGHYTAYCRNSLDGQWYSYDDSTVEPL---- 489
Cdd:cd02668  235 YLAESD-----------------------EGSYVYELSGVLIHQGVsAYSGHYIAHIKDEQTGEWYKFNDEDVEEMpgkp 291
                        170       180       190
                 ....*....|....*....|....*....|..
gi 767991578 490 ------------REDEVN-----TRGAYILFY 504
Cdd:cd02668  292 lklgnsedpakpRKSEIKkgthsSRTAYMLVY 323
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
336-505 2.18e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 89.68  E-value: 2.18e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 336 SCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVG--ERRNKLSTLVKFPLSgLNMA 413
Cdd:cd02663  146 NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEqlNRYIKLFYRVVFPLE-LRLF 224
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 414 phvaqrSTSPEAglgpwpswkqpdclptSYPlDFLYDLYAVCNHHGN-LQGGHYTAYCRNslDGQWYSYDDSTVEPLRED 492
Cdd:cd02663  225 ------NTTDDA----------------ENP-DRLYELVAVVVHIGGgPNHGHYVSIVKS--HGGWLLFDDETVEKIDEN 279
                        170       180
                 ....*....|....*....|.
gi 767991578 493 EV--------NTRGAYILFYQ 505
Cdd:cd02663  280 AVeeffgdspNQATAYVLFYQ 300
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
352-506 2.80e-13

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 71.37  E-value: 2.80e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 352 LAQDDAWKcphcqVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRnKLSTLVKFPLsglNMaphvaqrSTSPEAGLGPWP 431
Cdd:COG5533  158 AKENEELE-----VQAKQEYEVSFVKLPKILTIQLKRFANLGGNQ-KIDTEVDEKF---EL-------PVKHDQILNIVK 221
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767991578 432 SwkqpdclptsypldFLYDLYAVCNHHGNLQGGHYTAYCRNslDGQWYSYDDSTVEPLREDE---VNTRGAYILFYQK 506
Cdd:COG5533  222 E--------------TYYDLVGFVLHQGSLEGGHYIAYVKK--GGKWEKANDSDVTPVSEEEainEKAKNAYLYFYER 283
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
336-505 1.08e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 65.85  E-value: 1.08e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 336 SCTLDECFQFYTKEEQLaqDDAwKCPHCQvlqQGMVKLslwtlPDILIIHLKRFC---QVGERRNklSTLVKFPlsglnm 412
Cdd:cd02662   95 GTTLEHCLDDFLSTEII--DDY-KCDRCQ---TVIVRL-----PQILCIHLSRSVfdgRGTSTKN--SCKVSFP------ 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 413 aphvaqrstspeaglgpwpswkqpDCLPtsyplDFLYDLYAVCNHHGNLQGGHYTAYCRNSL------------------ 474
Cdd:cd02662  156 ------------------------ERLP-----KVLYRLRAVVVHYGSHSSGHYVCYRRKPLfskdkepgsfvrmregps 206
                        170       180       190
                 ....*....|....*....|....*....|....
gi 767991578 475 --DGQWYSYDDSTVEPLREDEV-NTRGAYILFYQ 505
Cdd:cd02662  207 stSHPWWRISDTTVKEVSESEVlEQKSAYMLFYE 240
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
338-494 1.38e-11

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 68.74  E-value: 1.38e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578  338 TLDECFQFYTKEEQLAQDDAWKCPH--CQVLQQGMVKLSLwtlPDILIIHLKRFCQVGERRN--KLSTLVKFPLSgLNMA 413
Cdd:COG5077   339 NLQESFRRYIQVETLDGDNRYNAEKhgLQDAKKGVIFESL---PPVLHLQLKRFEYDFERDMmvKINDRYEFPLE-IDLL 414
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578  414 PHVAQRSTSPEAGlgpwpswkqpdclptsyplDFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDE 493
Cdd:COG5077   415 PFLDRDADKSENS-------------------DAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKE 475

                  .
gi 767991578  494 V 494
Cdd:COG5077   476 V 476
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
361-505 1.19e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 61.57  E-value: 1.19e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 361 PHCQVLQQGMVKLSLWTLPDILIIHLKRFCQ---VGErRNKlsTLVKFPLSGLNMAPHVaqrstspeaglgpwPSWKQPD 437
Cdd:cd02669  315 KTETELKDSLKRYLISRLPKYLIFHIKRFSKnnfFKE-KNP--TIVNFPIKNLDLSDYV--------------HFDKPSL 377
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767991578 438 CLPTSypldflYDLYAVCNHHGNLQG-GHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQ 505
Cdd:cd02669  378 NLSTK------YNLVANIVHEGTPQEdGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
344-504 3.91e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 56.05  E-value: 3.91e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 344 QFYTkEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRN------KLSTLVKFPLSglnmaPHVA 417
Cdd:cd02671  188 QFAS-VERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDcygglsKVNTPLLTPLK-----LSLE 261
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 418 QRSTSPeaglgpwpswKQPDclptsypldflYDLYAVCNHHG-NLQGGHYTAYCRnsldgqWYSYDDSTVEPLREDEV-- 494
Cdd:cd02671  262 EWSTKP----------KNDV-----------YRLFAVVMHSGaTISSGHYTAYVR------WLLFDDSEVKVTEEKDFle 314
                        170
                 ....*....|....*..
gi 767991578 495 -------NTRGAYILFY 504
Cdd:cd02671  315 alspntsSTSTPYLLFY 331
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
438-504 4.35e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 55.80  E-value: 4.35e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767991578 438 CLPTSYpldflYDLYAVCNHHG-NLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNT-RG------AYILFY 504
Cdd:cd02657  235 CTPSGY-----YELVAVITHQGrSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKlSGggdwhiAYILLY 304
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
44-81 6.97e-08

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 54.22  E-value: 6.97e-08
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 767991578  44 RSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTL 81
Cdd:cd02674   49 KSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVTL 86
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
337-505 1.28e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 51.34  E-value: 1.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 337 CTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGER--RNKLSTLVKFPLSgLNMAP 414
Cdd:cd02664  134 PSVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKThvREKIMDNVSINEV-LSLPV 212
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 415 HVAQRSTSPEAGLGPWPSWKQPDCLPTSYPldflYDLYAVCNHHG-NLQGGHYTAYCRNS-------------------- 473
Cdd:cd02664  213 RVESKSSESPLEKKEEESGDDGELVTRQVH----YRLYAVVVHSGySSESGHYFTYARDQtdadstgqecpepkdaeend 288
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 767991578 474 LDGQWYSYDDSTVEPLREDEV---------NTrgAYILFYQ 505
Cdd:cd02664  289 ESKNWYLFNDSRVTFSSFESVqnvtsrfpkDT--PYILFYE 327
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
364-505 1.42e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 50.60  E-value: 1.42e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 364 QVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVkFPLSGLNMAPHVA-QRSTSPEAGLGPWPSWKQPDCLPTS 442
Cdd:cd02670   84 QCLEQYFNNSVFAKAPSCLIICLKRYGKTEGKAQKMFKKI-LIPDEIDIPDFVAdDPRACSKCQLECRVCYDDKDFSPTC 162
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 443 YPLdFLYDLYAVCNHHGNLQGGHYTAYCRNS-----------LDGQWYSYDDSTVEPLREDEVNTRG------AYILFYQ 505
Cdd:cd02670  163 GKF-KLSLCSAVCHRGTSLETGHYVAFVRYGsysltetdneaYNAQWVFFDDMADRDGVSNGFNIPAarlledPYMLFYQ 241
Peptidase_C19P cd02672
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
357-505 4.19e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239137 [Multi-domain]  Cd Length: 268  Bit Score: 43.27  E-value: 4.19e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767991578 357 AWKCpHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFplSGLNMAPHVaqrstSPEAGLGPWPSwkqp 436
Cdd:cd02672  135 AWCD-TCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLP--SGKVMQNKV-----SPKAIDHDKLV---- 202
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767991578 437 dcLPTSYPLDFLYDLYA-VCNHHGNLQGGHYTA----YCRNSLDGQWYSYDDSTVEPLREDevntrgAYILFYQ 505
Cdd:cd02672  203 --KNRGQESIYKYELVGyVCEINDSSRGQHNVVfvikVNEESTHGRWYLFNDFLVTPVSEL------AYILLYQ 268
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
449-504 4.86e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 42.90  E-value: 4.86e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767991578 449 YDLYAVCNHHG-NLQGGHYTAYCRNSLDG-QWYSYDDSTVEPLREDEVN---TRGAYILFY 504
Cdd:cd02673  184 YSLVAVICHLGeSPYDGHYIAYTKELYNGsSWLYCSDDEIRPVSKNDVStnaRSSGYLIFY 244
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
446-504 2.24e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 41.32  E-value: 2.24e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767991578 446 DFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEV------NTRGAYILFY 504
Cdd:cd02666  278 SYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVflftlgNTATPYFLVY 342
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
44-76 4.28e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 40.43  E-value: 4.28e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 767991578  44 RSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRF 76
Cdd:cd02660  132 QSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTPS 164
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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