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Conserved domains on  [gi|767971717|ref|XP_011518882|]
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lamin tail domain-containing protein 1 isoform X3 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LTD super family cl47611
Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is ...
 163-226 2.07e-06

Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.


The actual alignment was detected with superfamily member pfam00932:

Pssm-ID: 460003 [Multi-domain]  Cd Length: 108  Bit Score: 45.88  E-value: 2.07e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767971717  163 SSSLGDVEIAEVNVKGL-----FVKLINSSlDKEMAIGDHILQQNVNGQtislYRFLPNIVMQANSTVT 226
Cdd:pfam00932   1 SSATGDVVISEVVYDGSggndeFIELYNTG-SKAVDLSGWKLQDASGGT----YTFPNGTTLAPGQTVV 64
 
Name Accession Description Interval E-value
LTD pfam00932
Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is ...
 163-226 2.07e-06

Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.


Pssm-ID: 460003 [Multi-domain]  Cd Length: 108  Bit Score: 45.88  E-value: 2.07e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767971717  163 SSSLGDVEIAEVNVKGL-----FVKLINSSlDKEMAIGDHILQQNVNGQtislYRFLPNIVMQANSTVT 226
Cdd:pfam00932   1 SSATGDVVISEVVYDGSggndeFIELYNTG-SKAVDLSGWKLQDASGGT----YTFPNGTTLAPGQTVV 64
 
Name Accession Description Interval E-value
LTD pfam00932
Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is ...
 163-226 2.07e-06

Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.


Pssm-ID: 460003 [Multi-domain]  Cd Length: 108  Bit Score: 45.88  E-value: 2.07e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767971717  163 SSSLGDVEIAEVNVKGL-----FVKLINSSlDKEMAIGDHILQQNVNGQtislYRFLPNIVMQANSTVT 226
Cdd:pfam00932   1 SSATGDVVISEVVYDGSggndeFIELYNTG-SKAVDLSGWKLQDASGGT----YTFPNGTTLAPGQTVV 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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