|
Name |
Accession |
Description |
Interval |
E-value |
| HAP1_N |
pfam04849 |
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found ... |
80-403 |
7.01e-117 |
|
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologs. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntington's disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34.
Pssm-ID: 461455 [Multi-domain] Cd Length: 309 Bit Score: 350.48 E-value: 7.01e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 80 YVFQGPYGPRATGLGTGKAEGIWKTPAAYiGRRPGVSGPERAAFIRELQE--ALCPNPPPTKKITEDDVKVMLYLLEEKE 157
Cdd:pfam04849 1 EEQIPPYKLRADTLGTGYANQDWKIPSPA-GRPPEVSLPLSPEQIRETLNyfLLCSDRVSQMTKTYNDIEAVTRLLEEKE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 158 RDLNTAARIGQSLVKQNSVLMEENNKLETMLGSAREEILHLRKQVNLRDDLLQLYSDSDDDDDEEDEEDEEEGEEEEReg 237
Cdd:pfam04849 80 RDLELAARIGQSLLKQNSVLTERNEALEEQLGSAREEILQLRHELSKKDDLLQIYSNDAEESETESSCSTPLRRNESF-- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 238 qrdqdqqhdhpygapkphpkaETAHRCPQLETLQQKLRLLEEENDHLREEASHL----DNLEDEEQMLILECVEQFSEAS 313
Cdd:pfam04849 158 ---------------------SSLHGCVQLDALQEKLRGLEEENLKLRSEASHLktetDTYEEKEQQLMSDCVEQLSEAN 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 314 QQMAELSEVLVLRLEGYERQQKEITQLQAEITKLQQRCQSYGAQTEKLQQMLASEKGIHseQSLRagSYMQDYGSRP--- 390
Cdd:pfam04849 217 QQMAELSEELARKMEENLRQQEEITSLLAQIVDLQHKCKELGIENEELQQHLQASKEAQ--RQLT--SELQELQDRYaec 292
|
330
....*....|....*..
gi 755537405 391 ----RDRQEDGKSHRQR 403
Cdd:pfam04849 293 lgmlHEAQEELKELRKK 309
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
266-369 |
8.39e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 8.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 266 QLETLQQKLRLLEEENDHLREEASHLDNLEDEEQMLILECVEQFSEASQQMAELSEVLvlrLEGYERQQKEITQLQAEIT 345
Cdd:COG4717 140 ELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDL---AEELEELQQRLAELEEELE 216
|
90 100
....*....|....*....|....
gi 755537405 346 KLQQRCQSYGAQTEKLQQMLASEK 369
Cdd:COG4717 217 EAQEELEELEEELEQLENELEAAA 240
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
266-347 |
5.06e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 5.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 266 QLETLQQKLRLLEEENDHLREEASHLDNLEDEEQMLILECVEQFSEASQQMAELSEVLVLRLEGYERQ-QKEITQLQAEI 344
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEaRRRLKRLENKI 981
|
...
gi 755537405 345 TKL 347
Cdd:TIGR02168 982 KEL 984
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
266-404 |
7.59e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.56 E-value: 7.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 266 QLETLQQKLRLLEEEndhLREEASHLDNLEDEEQMLIL-----ECVEQF-SEASQQMAELSEVLVLRLEGYERQQKEITQ 339
Cdd:PRK04863 514 QLQQLRMRLSELEQR---LRQQQRAERLLAEFCKRLGKnlddeDELEQLqEELEARLESLSESVSEARERRMALRQQLEQ 590
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755537405 340 LQAEITKLQQRCQSYGAQTEKLQQmLASEKGIHSEQSLRAGSYMQDYGSRPRD--RQEDGKSHRQRS 404
Cdd:PRK04863 591 LQARIQRLAARAPAWLAAQDALAR-LREQSGEEFEDSQDVTEYMQQLLEREREltVERDELAARKQA 656
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| HAP1_N |
pfam04849 |
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found ... |
80-403 |
7.01e-117 |
|
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologs. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntington's disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34.
Pssm-ID: 461455 [Multi-domain] Cd Length: 309 Bit Score: 350.48 E-value: 7.01e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 80 YVFQGPYGPRATGLGTGKAEGIWKTPAAYiGRRPGVSGPERAAFIRELQE--ALCPNPPPTKKITEDDVKVMLYLLEEKE 157
Cdd:pfam04849 1 EEQIPPYKLRADTLGTGYANQDWKIPSPA-GRPPEVSLPLSPEQIRETLNyfLLCSDRVSQMTKTYNDIEAVTRLLEEKE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 158 RDLNTAARIGQSLVKQNSVLMEENNKLETMLGSAREEILHLRKQVNLRDDLLQLYSDSDDDDDEEDEEDEEEGEEEEReg 237
Cdd:pfam04849 80 RDLELAARIGQSLLKQNSVLTERNEALEEQLGSAREEILQLRHELSKKDDLLQIYSNDAEESETESSCSTPLRRNESF-- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 238 qrdqdqqhdhpygapkphpkaETAHRCPQLETLQQKLRLLEEENDHLREEASHL----DNLEDEEQMLILECVEQFSEAS 313
Cdd:pfam04849 158 ---------------------SSLHGCVQLDALQEKLRGLEEENLKLRSEASHLktetDTYEEKEQQLMSDCVEQLSEAN 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 314 QQMAELSEVLVLRLEGYERQQKEITQLQAEITKLQQRCQSYGAQTEKLQQMLASEKGIHseQSLRagSYMQDYGSRP--- 390
Cdd:pfam04849 217 QQMAELSEELARKMEENLRQQEEITSLLAQIVDLQHKCKELGIENEELQQHLQASKEAQ--RQLT--SELQELQDRYaec 292
|
330
....*....|....*..
gi 755537405 391 ----RDRQEDGKSHRQR 403
Cdd:pfam04849 293 lgmlHEAQEELKELRKK 309
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
266-369 |
8.39e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 8.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 266 QLETLQQKLRLLEEENDHLREEASHLDNLEDEEQMLILECVEQFSEASQQMAELSEVLvlrLEGYERQQKEITQLQAEIT 345
Cdd:COG4717 140 ELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDL---AEELEELQQRLAELEEELE 216
|
90 100
....*....|....*....|....
gi 755537405 346 KLQQRCQSYGAQTEKLQQMLASEK 369
Cdd:COG4717 217 EAQEELEELEEELEQLENELEAAA 240
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
145-379 |
2.16e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 145 DVKVMLYLLEEKERDLNTAARIGQSLVKQNSVLMEENNKLETMLGSAREEILHLRKQVNLRddLLQLYSDSDDDDDEEDE 224
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA--QAEEYELLAELARLEQD 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 225 EDEEEGEEEEREGQRDQDQQhdhpygapkphpkaetahrcpQLETLQQKLRLLEEENDHLREEASHLDNLEDEEQMLILE 304
Cdd:COG1196 304 IARLEERRRELEERLEELEE---------------------ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755537405 305 CVEQFSEASQQMAELSEVLVLRLEGYERQQKEITQLQAEITKLQQRCQsygaQTEKLQQMLASEKGIHSEQSLRA 379
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE----ALLERLERLEEELEELEEALAEL 433
|
|
| FlgN |
pfam05130 |
FlgN protein; This family includes the FlgN protein and export chaperone involved in flagellar ... |
266-352 |
5.80e-04 |
|
FlgN protein; This family includes the FlgN protein and export chaperone involved in flagellar synthesis.
Pssm-ID: 428323 [Multi-domain] Cd Length: 140 Bit Score: 40.43 E-value: 5.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 266 QLETLQQKLRLLEEENDHLRE-EASHLDNLEDEEQmlilECVEQFSEASQQMAELSEVLVLRLEG--------YERQQKE 336
Cdd:pfam05130 10 ELELLEELLELLEEEQEALKAgDIEALEELTEEKQ----ELLQKLAQLEKERRELLAELGLSPEEatlsellaKEEEDPE 85
|
90
....*....|....*.
gi 755537405 337 ITQLQAEITKLQQRCQ 352
Cdd:pfam05130 86 LRELWQELLELLERLK 101
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
266-371 |
7.37e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 7.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 266 QLETLQQKLRLLEEENDHLREEASHLDNL-----------EDEEQMLILECVEQFSEASQQMAELSEVLVLRLEGYERQQ 334
Cdd:COG4913 339 RLEQLEREIERLERELEERERRRARLEALlaalglplpasAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLR 418
|
90 100 110
....*....|....*....|....*....|....*..
gi 755537405 335 KEITQLQAEITKLQQRCQSYGAQTEKLQQMLASEKGI 371
Cdd:COG4913 419 RELRELEAEIASLERRKSNIPARLLALRDALAEALGL 455
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
266-379 |
3.76e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 3.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 266 QLETLQQKLRLLEEENDHLREEASHLDNLEDEEQmlilECVEQFSEASQQMAELsevlvlrlegyerqQKEITQLQAEIT 345
Cdd:COG4913 669 EIAELEAELERLDASSDDLAALEEQLEELEAELE----ELEEELDELKGEIGRL--------------EKELEQAEEELD 730
|
90 100 110
....*....|....*....|....*....|....*....
gi 755537405 346 KLQQRCQSYG-----AQTEKLQQMLASEKGIHSEQSLRA 379
Cdd:COG4913 731 ELQDRLEAAEdlarlELRALLEERFAAALGDAVERELRE 769
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
266-347 |
5.06e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 5.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 266 QLETLQQKLRLLEEENDHLREEASHLDNLEDEEQMLILECVEQFSEASQQMAELSEVLVLRLEGYERQ-QKEITQLQAEI 344
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEaRRRLKRLENKI 981
|
...
gi 755537405 345 TKL 347
Cdd:TIGR02168 982 KEL 984
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
266-369 |
7.55e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 39.12 E-value: 7.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 266 QLETLQQKLRLLEEENDHLREEASHLDNLEDEEQMLILECVEQFSEASQQMAELSEVLVLRLE-------GYERQQKEIT 338
Cdd:COG4372 39 ELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEeleslqeEAEELQEELE 118
|
90 100 110
....*....|....*....|....*....|.
gi 755537405 339 QLQAEITKLQQRCQSYGAQTEKLQQMLASEK 369
Cdd:COG4372 119 ELQKERQDLEQQRKQLEAQIAELQSEIAERE 149
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
266-404 |
7.59e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.56 E-value: 7.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 266 QLETLQQKLRLLEEEndhLREEASHLDNLEDEEQMLIL-----ECVEQF-SEASQQMAELSEVLVLRLEGYERQQKEITQ 339
Cdd:PRK04863 514 QLQQLRMRLSELEQR---LRQQQRAERLLAEFCKRLGKnlddeDELEQLqEELEARLESLSESVSEARERRMALRQQLEQ 590
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755537405 340 LQAEITKLQQRCQSYGAQTEKLQQmLASEKGIHSEQSLRAGSYMQDYGSRPRD--RQEDGKSHRQRS 404
Cdd:PRK04863 591 LQARIQRLAARAPAWLAAQDALAR-LREQSGEEFEDSQDVTEYMQQLLEREREltVERDELAARKQA 656
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
266-366 |
7.82e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.27 E-value: 7.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 266 QLETLQQKLRLLEEEndhlreeashLDNLEDEEQML---ILECVEQFSEASQQMAELSEVLVLRLEGYERQQKEITQLQA 342
Cdd:TIGR02168 324 QLEELESKLDELAEE----------LAELEEKLEELkeeLESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
90 100
....*....|....*....|....
gi 755537405 343 EITKLQQRCQSYGAQTEKLQQMLA 366
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDRRE 417
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
266-385 |
9.77e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 38.98 E-value: 9.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755537405 266 QLETLQQKLRLLEEENDHLREEASHLDNLEDEEQML---------ILECVEQFSEASQQMAELSEvLVLRLEGYERQQKE 336
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYAELQEELEELEEELEELeaeleelreELEKLEKLLQLLPLYQELEA-LEAELAELPERLEE 150
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 755537405 337 ITQLQAEITKLQQRCQSYGAQTEKLQQMLASEKGIHSEQSLRAGSYMQD 385
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAE 199
|
|
|