|
Name |
Accession |
Description |
Interval |
E-value |
| R3H_encore_like |
cd02642 |
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the ... |
162-223 |
1.11e-25 |
|
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner. :
Pssm-ID: 100071 Cd Length: 63 Bit Score: 100.37 E-value: 1.11e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755532339 162 DRMILLKMEQEMIDFIADSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHNVDQTG-KSVIINKT 223
Cdd:cd02642 1 DRLFVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSGgKCVIVNKT 63
|
|
| PRK10927 super family |
cl35972 |
cell division protein FtsN; |
558-709 |
4.58e-04 |
|
cell division protein FtsN; The actual alignment was detected with superfamily member PRK10927:
Pssm-ID: 236797 [Multi-domain] Cd Length: 319 Bit Score: 43.13 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 558 SRQSSGDTPEPPSG---TVYPASLLPQTAQPQSYVITSAGQQ---LSTGGFSDSGPPISQQVLQAPPSPQGFVQQPPPAQ 631
Cdd:PRK10927 91 SRQPGVRAPTEPSAggeVKTPEQLTPEQRQLLEQMQADMRQQptqLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQ 170
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755532339 632 MSVYYYPSGQYPTSTSQQyrplasvQYSAQRSQQIPQTTQQAGYQPVLsgqqgfqgmmgvQQSAHSQGVMSSQQGAPV 709
Cdd:PRK10927 171 QSRTTEQSWQQQTRTSQA-------APVQAQPRQSKPASTQQPYQDLL------------QTPAHTTAQSKPQQAAPV 229
|
|
| PHA03247 super family |
cl33720 |
large tegument protein UL36; Provisional |
387-734 |
7.51e-04 |
|
large tegument protein UL36; Provisional The actual alignment was detected with superfamily member PHA03247:
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.39 E-value: 7.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 387 SRTHPQSTALTSSVAAGSPGCMAYSENGMGGQVPPSSTSYILLPLESATGIPPGSillnphtgqpfVNPDGTPAIYNPPG 466
Cdd:PHA03247 2699 ADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGG-----------PARPARPPTTAGPP 2767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 467 SQQTLRGTVGGQPQQPPQQQPSPQPQQQVQASQPQMAGPlVTQSVQSLQPSSQSVQYPAVSFPPqhllpmsPTQHFPLRE 546
Cdd:PHA03247 2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD-PPAAVLAPAAALPPAASPAGPLPP-------PTSAQPTAP 2839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 547 ELAAQFSQlsmsrqssgdTPEPPSGTVYPASLLPQTAQPQSYVITSAgqqlstggfSDSGPPISQQVLQAPPSPQGFVQQ 626
Cdd:PHA03247 2840 PPPPGPPP----------PSLPLGGSVAPGGDVRRRPPSRSPAAKPA---------APARPPVRRLARPAVSRSTESFAL 2900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 627 PPPAQmsvyyypsgQYPTSTSQQYRPLASVQYSAQRSQQiPQTTQQAGYQPVLSGQQGFQGmmgvqQSAHSQGVMSSQQG 706
Cdd:PHA03247 2901 PPDQP---------ERPPQPQAPPPPQPQPQPPPPPQPQ-PPPPPPPRPQPPLAPTTDPAG-----AGEPSGAVPQPWLG 2965
|
330 340
....*....|....*....|....*...
gi 755532339 707 APVHGvmvsyptmsSYQVPMTQGSQAVP 734
Cdd:PHA03247 2966 ALVPG---------RVAVPRFRVPQPAP 2984
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| R3H_encore_like |
cd02642 |
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the ... |
162-223 |
1.11e-25 |
|
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Pssm-ID: 100071 Cd Length: 63 Bit Score: 100.37 E-value: 1.11e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755532339 162 DRMILLKMEQEMIDFIADSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHNVDQTG-KSVIINKT 223
Cdd:cd02642 1 DRLFVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSGgKCVIVNKT 63
|
|
| R3H |
smart00393 |
Putative single-stranded nucleic acids-binding domain; |
146-223 |
3.13e-13 |
|
Putative single-stranded nucleic acids-binding domain;
Pssm-ID: 214647 Cd Length: 79 Bit Score: 65.40 E-value: 3.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 146 IDLHGFLINTLKNNSRDRMILLKMEQEMIDFIAdSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHNVDQTG--KSVIINKT 223
Cdd:smart00393 1 ADFLPVTLDALSYRPRRREELIELELEIARFVK-STKESVELPPMNSYERKIVHELAEKYGLESESFGEGpkRRVVISKK 79
|
|
| R3H |
pfam01424 |
R3H domain; The name of the R3H domain comes from the characteristic spacing of the most ... |
166-222 |
2.19e-12 |
|
R3H domain; The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA.
Pssm-ID: 426259 Cd Length: 60 Bit Score: 62.48 E-value: 2.19e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 755532339 166 LLKMEQEMIDFIADSNNHYKkFPQMSSYQRMLVHRVAAYFGLDHNV--DQTGKSVIINK 222
Cdd:pfam01424 3 LEKLAEKLAEFVKDTGKSLE-LPPMSSYERRIIHELAQKYGLESESegEEPNRRVVITK 60
|
|
| PRK10927 |
PRK10927 |
cell division protein FtsN; |
558-709 |
4.58e-04 |
|
cell division protein FtsN;
Pssm-ID: 236797 [Multi-domain] Cd Length: 319 Bit Score: 43.13 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 558 SRQSSGDTPEPPSG---TVYPASLLPQTAQPQSYVITSAGQQ---LSTGGFSDSGPPISQQVLQAPPSPQGFVQQPPPAQ 631
Cdd:PRK10927 91 SRQPGVRAPTEPSAggeVKTPEQLTPEQRQLLEQMQADMRQQptqLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQ 170
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755532339 632 MSVYYYPSGQYPTSTSQQyrplasvQYSAQRSQQIPQTTQQAGYQPVLsgqqgfqgmmgvQQSAHSQGVMSSQQGAPV 709
Cdd:PRK10927 171 QSRTTEQSWQQQTRTSQA-------APVQAQPRQSKPASTQQPYQDLL------------QTPAHTTAQSKPQQAAPV 229
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
387-734 |
7.51e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.39 E-value: 7.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 387 SRTHPQSTALTSSVAAGSPGCMAYSENGMGGQVPPSSTSYILLPLESATGIPPGSillnphtgqpfVNPDGTPAIYNPPG 466
Cdd:PHA03247 2699 ADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGG-----------PARPARPPTTAGPP 2767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 467 SQQTLRGTVGGQPQQPPQQQPSPQPQQQVQASQPQMAGPlVTQSVQSLQPSSQSVQYPAVSFPPqhllpmsPTQHFPLRE 546
Cdd:PHA03247 2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD-PPAAVLAPAAALPPAASPAGPLPP-------PTSAQPTAP 2839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 547 ELAAQFSQlsmsrqssgdTPEPPSGTVYPASLLPQTAQPQSYVITSAgqqlstggfSDSGPPISQQVLQAPPSPQGFVQQ 626
Cdd:PHA03247 2840 PPPPGPPP----------PSLPLGGSVAPGGDVRRRPPSRSPAAKPA---------APARPPVRRLARPAVSRSTESFAL 2900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 627 PPPAQmsvyyypsgQYPTSTSQQYRPLASVQYSAQRSQQiPQTTQQAGYQPVLSGQQGFQGmmgvqQSAHSQGVMSSQQG 706
Cdd:PHA03247 2901 PPDQP---------ERPPQPQAPPPPQPQPQPPPPPQPQ-PPPPPPPRPQPPLAPTTDPAG-----AGEPSGAVPQPWLG 2965
|
330 340
....*....|....*....|....*...
gi 755532339 707 APVHGvmvsyptmsSYQVPMTQGSQAVP 734
Cdd:PHA03247 2966 ALVPG---------RVAVPRFRVPQPAP 2984
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
545-682 |
1.10e-03 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 42.49 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 545 REELAAQFSQLSM-SRQSSGDTPEPPSgtvYPASLLPQTAQPQSYvitsAGQQLstgGFSDSGPPISQQVLQAPPSPQGF 623
Cdd:TIGR01628 368 RAHLQDQFMQLQPrMRQLPMGSPMGGA---MGQPPYYGQGPQQQF----NGQPL---GWPRMSMMPTPMGPGGPLRPNGL 437
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 755532339 624 VQQPPPAQMSVYYYPSGQYPTSTSQQYRPLASVQYSAQRSQQIPQTTQQAGYQPVLSGQ 682
Cdd:TIGR01628 438 APMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQV 496
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| R3H_encore_like |
cd02642 |
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the ... |
162-223 |
1.11e-25 |
|
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Pssm-ID: 100071 Cd Length: 63 Bit Score: 100.37 E-value: 1.11e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755532339 162 DRMILLKMEQEMIDFIADSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHNVDQTG-KSVIINKT 223
Cdd:cd02642 1 DRLFVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSGgKCVIVNKT 63
|
|
| R3H |
smart00393 |
Putative single-stranded nucleic acids-binding domain; |
146-223 |
3.13e-13 |
|
Putative single-stranded nucleic acids-binding domain;
Pssm-ID: 214647 Cd Length: 79 Bit Score: 65.40 E-value: 3.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 146 IDLHGFLINTLKNNSRDRMILLKMEQEMIDFIAdSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHNVDQTG--KSVIINKT 223
Cdd:smart00393 1 ADFLPVTLDALSYRPRRREELIELELEIARFVK-STKESVELPPMNSYERKIVHELAEKYGLESESFGEGpkRRVVISKK 79
|
|
| R3H |
pfam01424 |
R3H domain; The name of the R3H domain comes from the characteristic spacing of the most ... |
166-222 |
2.19e-12 |
|
R3H domain; The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA.
Pssm-ID: 426259 Cd Length: 60 Bit Score: 62.48 E-value: 2.19e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 755532339 166 LLKMEQEMIDFIADSNNHYKkFPQMSSYQRMLVHRVAAYFGLDHNV--DQTGKSVIINK 222
Cdd:pfam01424 3 LEKLAEKLAEFVKDTGKSLE-LPPMSSYERRIIHELAQKYGLESESegEEPNRRVVITK 60
|
|
| R3H |
cd02325 |
R3H domain. The name of the R3H domain comes from the characteristic spacing of the most ... |
166-222 |
3.29e-12 |
|
R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Pssm-ID: 100064 Cd Length: 59 Bit Score: 61.86 E-value: 3.29e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 755532339 166 LLKMEQEMIDFIADSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHNVDQTG--KSVIINK 222
Cdd:cd02325 1 REEREEELEAFAKDAAGKSLELPPMNSYERKLIHDLAEYYGLKSESEGEGpnRRVVITK 59
|
|
| PRK10927 |
PRK10927 |
cell division protein FtsN; |
558-709 |
4.58e-04 |
|
cell division protein FtsN;
Pssm-ID: 236797 [Multi-domain] Cd Length: 319 Bit Score: 43.13 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 558 SRQSSGDTPEPPSG---TVYPASLLPQTAQPQSYVITSAGQQ---LSTGGFSDSGPPISQQVLQAPPSPQGFVQQPPPAQ 631
Cdd:PRK10927 91 SRQPGVRAPTEPSAggeVKTPEQLTPEQRQLLEQMQADMRQQptqLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQ 170
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755532339 632 MSVYYYPSGQYPTSTSQQyrplasvQYSAQRSQQIPQTTQQAGYQPVLsgqqgfqgmmgvQQSAHSQGVMSSQQGAPV 709
Cdd:PRK10927 171 QSRTTEQSWQQQTRTSQA-------APVQAQPRQSKPASTQQPYQDLL------------QTPAHTTAQSKPQQAAPV 229
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
387-734 |
7.51e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.39 E-value: 7.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 387 SRTHPQSTALTSSVAAGSPGCMAYSENGMGGQVPPSSTSYILLPLESATGIPPGSillnphtgqpfVNPDGTPAIYNPPG 466
Cdd:PHA03247 2699 ADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGG-----------PARPARPPTTAGPP 2767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 467 SQQTLRGTVGGQPQQPPQQQPSPQPQQQVQASQPQMAGPlVTQSVQSLQPSSQSVQYPAVSFPPqhllpmsPTQHFPLRE 546
Cdd:PHA03247 2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD-PPAAVLAPAAALPPAASPAGPLPP-------PTSAQPTAP 2839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 547 ELAAQFSQlsmsrqssgdTPEPPSGTVYPASLLPQTAQPQSYVITSAgqqlstggfSDSGPPISQQVLQAPPSPQGFVQQ 626
Cdd:PHA03247 2840 PPPPGPPP----------PSLPLGGSVAPGGDVRRRPPSRSPAAKPA---------APARPPVRRLARPAVSRSTESFAL 2900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 627 PPPAQmsvyyypsgQYPTSTSQQYRPLASVQYSAQRSQQiPQTTQQAGYQPVLSGQQGFQGmmgvqQSAHSQGVMSSQQG 706
Cdd:PHA03247 2901 PPDQP---------ERPPQPQAPPPPQPQPQPPPPPQPQ-PPPPPPPRPQPPLAPTTDPAG-----AGEPSGAVPQPWLG 2965
|
330 340
....*....|....*....|....*...
gi 755532339 707 APVHGvmvsyptmsSYQVPMTQGSQAVP 734
Cdd:PHA03247 2966 ALVPG---------RVAVPRFRVPQPAP 2984
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
545-767 |
1.02e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 42.76 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 545 REELAAQFSQLSMSR---QSSGDTPEPP--SGTVYPASLLPQTAQPQsyvitsagQQLSTGGFSDSGPPISQQVLQAPPS 619
Cdd:PRK10263 661 QDELARQFAQTQQQRygeQYQHDVPVNAedADAAAEAELARQFAQTQ--------QQRYSGEQPAGANPFSLDDFEFSPM 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 620 pQGFVQQPPPAQMsvyyYPSGQYPTSTSQQyRPLASVQYSAQRSQQIPQTTQQAGYQPVLSGQQGFQGMMGVQQSAHSQG 699
Cdd:PRK10263 733 -KALLDDGPHEPL----FTPIVEPVQQPQQ-PVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 700 VMSSQQGAPvhgvmvsyptmsSYQVPMtqgSQAVPQQTYQPPIMLPSQAGQGSL----------------PATGMPVYCN 763
Cdd:PRK10263 807 PQQPVAPQP------------QYQQPQ---QPVAPQPQYQQPQQPVAPQPQDTLlhpllmrngdsrplhkPTTPLPSLDL 871
|
....
gi 755532339 764 VTPP 767
Cdd:PRK10263 872 LTPP 875
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
545-682 |
1.10e-03 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 42.49 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 545 REELAAQFSQLSM-SRQSSGDTPEPPSgtvYPASLLPQTAQPQSYvitsAGQQLstgGFSDSGPPISQQVLQAPPSPQGF 623
Cdd:TIGR01628 368 RAHLQDQFMQLQPrMRQLPMGSPMGGA---MGQPPYYGQGPQQQF----NGQPL---GWPRMSMMPTPMGPGGPLRPNGL 437
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 755532339 624 VQQPPPAQMSVYYYPSGQYPTSTSQQYRPLASVQYSAQRSQQIPQTTQQAGYQPVLSGQ 682
Cdd:TIGR01628 438 APMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQV 496
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
531-727 |
1.74e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 41.99 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 531 QHLLPMSPTQHFPLRE-ELAAQFSQLSMSRQSSgdtpEPPSGTvYPASLLPQTAQPQSYVITSAGQQLStggFSDSGPPI 609
Cdd:PRK10263 681 QHDVPVNAEDADAAAEaELARQFAQTQQQRYSG----EQPAGA-NPFSLDDFEFSPMKALLDDGPHEPL---FTPIVEPV 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 610 SQQVLQAPPSPQGFVQQPPPAQMSVYYYPsgQYPTSTSQQYR-PLASVQYSAQRSQ-QIPQTTQQAGYQPvlsgQQGFQG 687
Cdd:PRK10263 753 QQPQQPVAPQQQYQQPQQPVAPQPQYQQP--QQPVAPQPQYQqPQQPVAPQPQYQQpQQPVAPQPQYQQP----QQPVAP 826
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 755532339 688 MMGVQQsaHSQGVMSSQQGAPVHGVMVSYPTMSSYQVPMT 727
Cdd:PRK10263 827 QPQYQQ--PQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTT 864
|
|
| R3H_sperm-antigen |
cd02636 |
R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7. ... |
168-207 |
2.43e-03 |
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R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Pssm-ID: 100065 Cd Length: 61 Bit Score: 36.92 E-value: 2.43e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 755532339 168 KMEQEMIDFIADSNNHYKKFPQMSSYQRMLVHRVAAYFGL 207
Cdd:cd02636 3 SMEKEVSKFIKDSVRTREKFQPMDKVERSIVHDVAEVAGL 42
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| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
573-761 |
3.62e-03 |
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DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 40.84 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 573 VYPASLLPQTAQPQSYVITSAGQQLSTGGFSDSGPPISQQVLQapPSPQGFVQQPPPAQMSVYYYPSGQYPTSTSQQYRP 652
Cdd:PRK10263 332 SWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIA--PAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYA 409
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90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755532339 653 LASVQYSAQrsQQIPQTTQQAGYQPVLSGQqgfqgmmgVQQSAHSQGVMSSQQGaPVHGVMVSYPTMSSYQVPMTQGSQA 732
Cdd:PRK10263 410 PAAEQPAQQ--PYYAPAPEQPAQQPYYAPA--------PEQPVAGNAWQAEEQQ-STFAPQSTYQTEQTYQQPAAQEPLY 478
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170 180
....*....|....*....|....*....
gi 755532339 733 VPQQTYQPPIMLPSQAGQGSLPATGMPVY 761
Cdd:PRK10263 479 QQPQPVEQQPVVEPEPVVEETKPARPPLY 507
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| R3H_Smubp-2_like |
cd02641 |
R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and ... |
176-220 |
4.47e-03 |
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R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Pssm-ID: 100070 Cd Length: 60 Bit Score: 36.18 E-value: 4.47e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 755532339 176 FIADSNNHYKKFP-QMSSYQRMLVHRVAAYFGLDHNVDQTGKSVII 220
Cdd:cd02641 11 FMKDPKATELEFPpTLSSHDRLLVHELAEELGLRHESTGEGSDRVI 56
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