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Conserved domains on  [gi|568957295|ref|XP_006531298|]
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thymidine kinase 2, mitochondrial isoform X3 [Mus musculus]

Protein Classification

nucleoside/nucleotide kinase family protein( domain architecture ID 106737)

nucleoside/nucleotide kinase family protein may catalyze the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NK super family cl17190
Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of ...
2-181 4.03e-61

Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.


The actual alignment was detected with superfamily member pfam01712:

Pssm-ID: 450170  Cd Length: 201  Bit Score: 188.30  E-value: 4.03e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957295    2 EPVLKWRNvhghNPLSLMYHDASRWGLTLQTYVQLTMLDQHTRP-QMSPVRLMERSIYSARYIFVENLYRSGKMPEVDYA 80
Cdd:pfam01712  29 EPVDRWTN----PYLDKFYKDPSRWSFALQTYFLNSRFKQQLEAfFTGQVVILERSIYSDRYIFAKMLYDKGTMSDEEYK 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957295   81 ILSEWFDWIVRNIDvSVDLIVYLRTTPEICYQRLKMRCREEEKVIPMEYLHAIHRLYEEWLVNGSLFpaaaPVLVIEADh 160
Cdd:pfam01712 105 TYKDLYDNMLLEFP-KPDLIIYLKTSPETCLERIKKRGRTEEQNISLDYLERLHEKYEAWLKKLNLS----PVLVIDGD- 178
                         170       180
                  ....*....|....*....|.
gi 568957295  161 nlEKMLELFEQNRARILTPEN 181
Cdd:pfam01712 179 --ELDFVFFEEDREDVMNEVN 197
 
Name Accession Description Interval E-value
dNK pfam01712
Deoxynucleoside kinase; This family consists of various deoxynucleoside kinases cytidine EC:2. ...
2-181 4.03e-61

Deoxynucleoside kinase; This family consists of various deoxynucleoside kinases cytidine EC:2.7.1.74, guanosine EC:2.7.1.113, adenosine EC:2.7.1.76 and thymidine kinase EC:2.7.1.21 (which also phosphorylates deoxyuridine and deoxycytosine.) These enzymes catalyze the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside. Using ATP and yielding ADP in the process.


Pssm-ID: 396326  Cd Length: 201  Bit Score: 188.30  E-value: 4.03e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957295    2 EPVLKWRNvhghNPLSLMYHDASRWGLTLQTYVQLTMLDQHTRP-QMSPVRLMERSIYSARYIFVENLYRSGKMPEVDYA 80
Cdd:pfam01712  29 EPVDRWTN----PYLDKFYKDPSRWSFALQTYFLNSRFKQQLEAfFTGQVVILERSIYSDRYIFAKMLYDKGTMSDEEYK 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957295   81 ILSEWFDWIVRNIDvSVDLIVYLRTTPEICYQRLKMRCREEEKVIPMEYLHAIHRLYEEWLVNGSLFpaaaPVLVIEADh 160
Cdd:pfam01712 105 TYKDLYDNMLLEFP-KPDLIIYLKTSPETCLERIKKRGRTEEQNISLDYLERLHEKYEAWLKKLNLS----PVLVIDGD- 178
                         170       180
                  ....*....|....*....|.
gi 568957295  161 nlEKMLELFEQNRARILTPEN 181
Cdd:pfam01712 179 --ELDFVFFEEDREDVMNEVN 197
dNK cd01673
Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to ...
2-160 1.38e-49

Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.


Pssm-ID: 238836  Cd Length: 193  Bit Score: 158.93  E-value: 1.38e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957295   2 EPVLkwRNVHGHNPLSLMYHDASRWGLTLQTYVQLTMLDQHTRPQM----SPVRLMERSIYSARYIFVENLYRSGKMPeV 77
Cdd:cd01673   30 EPVE--PDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEhlstGQGVILERSIFSDRVFAEANLKEGGIMK-T 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957295  78 DYAILSEWFDWIVRNiDVSVDLIVYLRTTPEICYQRLKMRCREEEKVIPMEYLHAIHRLYEEWLVNGSLFpaAAPVLVIE 157
Cdd:cd01673  107 EYDLYNELFDNLIPE-LLPPDLVIYLDASPETCLKRIKKRGRPEEQGIPLDYLEDLHEAYEKWFLPQMYE--KAPVLIID 183

                 ...
gi 568957295 158 ADH 160
Cdd:cd01673  184 ANE 186
Dck COG1428
Deoxyadenosine/deoxycytidine kinase [Nucleotide transport and metabolism];
13-171 4.80e-31

Deoxyadenosine/deoxycytidine kinase [Nucleotide transport and metabolism];


Pssm-ID: 441037 [Multi-domain]  Cd Length: 205  Bit Score: 111.80  E-value: 4.80e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957295  13 HNP-LSLMYHDASRWGLTLQTYVQLTMLDQHTR-PQMSPVRLMERSIYSARyIFVENLYRSGKMPEVDYAILSEWFDWIV 90
Cdd:COG1428   38 DNPfLEDFYEDPKRWAFPLQLFFLLSRFKQLKDlRQFGGNVVSDRSIYKDA-IFAKLLHEMGTLSDREFDLYRQLFDNLT 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957295  91 RNIdVSVDLIVYLRTTPEICYQRLKMRCREEEKVIPMEYLHAIHRLYEEWLVNgslFPaAAPVLVIEAD-----HNLEKM 165
Cdd:COG1428  117 EDL-PKPDLVIYLQASVDTLLERIKKRGRDYEQNIDLDYLERLNEAYEEWFEH---YD-ASPVLIIDTDeldfvNNPEDL 191

                 ....*.
gi 568957295 166 LELFEQ 171
Cdd:COG1428  192 ELLLEQ 197
 
Name Accession Description Interval E-value
dNK pfam01712
Deoxynucleoside kinase; This family consists of various deoxynucleoside kinases cytidine EC:2. ...
2-181 4.03e-61

Deoxynucleoside kinase; This family consists of various deoxynucleoside kinases cytidine EC:2.7.1.74, guanosine EC:2.7.1.113, adenosine EC:2.7.1.76 and thymidine kinase EC:2.7.1.21 (which also phosphorylates deoxyuridine and deoxycytosine.) These enzymes catalyze the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside. Using ATP and yielding ADP in the process.


Pssm-ID: 396326  Cd Length: 201  Bit Score: 188.30  E-value: 4.03e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957295    2 EPVLKWRNvhghNPLSLMYHDASRWGLTLQTYVQLTMLDQHTRP-QMSPVRLMERSIYSARYIFVENLYRSGKMPEVDYA 80
Cdd:pfam01712  29 EPVDRWTN----PYLDKFYKDPSRWSFALQTYFLNSRFKQQLEAfFTGQVVILERSIYSDRYIFAKMLYDKGTMSDEEYK 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957295   81 ILSEWFDWIVRNIDvSVDLIVYLRTTPEICYQRLKMRCREEEKVIPMEYLHAIHRLYEEWLVNGSLFpaaaPVLVIEADh 160
Cdd:pfam01712 105 TYKDLYDNMLLEFP-KPDLIIYLKTSPETCLERIKKRGRTEEQNISLDYLERLHEKYEAWLKKLNLS----PVLVIDGD- 178
                         170       180
                  ....*....|....*....|.
gi 568957295  161 nlEKMLELFEQNRARILTPEN 181
Cdd:pfam01712 179 --ELDFVFFEEDREDVMNEVN 197
dNK cd01673
Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to ...
2-160 1.38e-49

Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.


Pssm-ID: 238836  Cd Length: 193  Bit Score: 158.93  E-value: 1.38e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957295   2 EPVLkwRNVHGHNPLSLMYHDASRWGLTLQTYVQLTMLDQHTRPQM----SPVRLMERSIYSARYIFVENLYRSGKMPeV 77
Cdd:cd01673   30 EPVE--PDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEhlstGQGVILERSIFSDRVFAEANLKEGGIMK-T 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957295  78 DYAILSEWFDWIVRNiDVSVDLIVYLRTTPEICYQRLKMRCREEEKVIPMEYLHAIHRLYEEWLVNGSLFpaAAPVLVIE 157
Cdd:cd01673  107 EYDLYNELFDNLIPE-LLPPDLVIYLDASPETCLKRIKKRGRPEEQGIPLDYLEDLHEAYEKWFLPQMYE--KAPVLIID 183

                 ...
gi 568957295 158 ADH 160
Cdd:cd01673  184 ANE 186
Dck COG1428
Deoxyadenosine/deoxycytidine kinase [Nucleotide transport and metabolism];
13-171 4.80e-31

Deoxyadenosine/deoxycytidine kinase [Nucleotide transport and metabolism];


Pssm-ID: 441037 [Multi-domain]  Cd Length: 205  Bit Score: 111.80  E-value: 4.80e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957295  13 HNP-LSLMYHDASRWGLTLQTYVQLTMLDQHTR-PQMSPVRLMERSIYSARyIFVENLYRSGKMPEVDYAILSEWFDWIV 90
Cdd:COG1428   38 DNPfLEDFYEDPKRWAFPLQLFFLLSRFKQLKDlRQFGGNVVSDRSIYKDA-IFAKLLHEMGTLSDREFDLYRQLFDNLT 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568957295  91 RNIdVSVDLIVYLRTTPEICYQRLKMRCREEEKVIPMEYLHAIHRLYEEWLVNgslFPaAAPVLVIEAD-----HNLEKM 165
Cdd:COG1428  117 EDL-PKPDLVIYLQASVDTLLERIKKRGRDYEQNIDLDYLERLNEAYEEWFEH---YD-ASPVLIIDTDeldfvNNPEDL 191

                 ....*.
gi 568957295 166 LELFEQ 171
Cdd:COG1428  192 ELLLEQ 197
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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