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Conserved domains on  [gi|568938986|ref|XP_006504882|]
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ubiquitin carboxyl-terminal hydrolase 12 isoform X2 [Mus musculus]

Protein Classification

ubiquitin carboxyl-terminal hydrolase family protein( domain architecture ID 913)

ubiquitin carboxyl-terminal hydrolase family protein is a C19 family peptidase that may deubiquitinate polyubiquitinated target proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
40-194 1.91e-76

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member cd02663:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 300  Bit Score: 232.59  E-value: 1.91e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  40 GLVNFGNTCYCNSVLQALYFcrpfrekvlayksqprkkENLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDN 119
Cdd:cd02663    1 GLENFGNTCYCNSVLQALYF------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELFDN 62
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568938986 120 YMQQDAHEFLNYLLNTIADILQEERKQEKQNGRLrngdvdNEDNNSTPDPTWVHEIFQGTLTNETRCLTCETAKS 194
Cdd:cd02663   63 YMHQDAHEFLNFLLNEIAEILDAERKAEKANRKL------NNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSS 131
 
Name Accession Description Interval E-value
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
40-194 1.91e-76

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 232.59  E-value: 1.91e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  40 GLVNFGNTCYCNSVLQALYFcrpfrekvlayksqprkkENLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDN 119
Cdd:cd02663    1 GLENFGNTCYCNSVLQALYF------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELFDN 62
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568938986 120 YMQQDAHEFLNYLLNTIADILQEERKQEKQNGRLrngdvdNEDNNSTPDPTWVHEIFQGTLTNETRCLTCETAKS 194
Cdd:cd02663   63 YMHQDAHEFLNFLLNEIAEILDAERKAEKANRKL------NNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSS 131
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
39-191 1.38e-40

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 140.66  E-value: 1.38e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986   39 FGLVNFGNTCYCNSVLQALYFCRPFREKVLAY-----KSQPRKKENLLTCLADLFHSIaTQKKKVGVIPPKKFITRLRKE 113
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRIsplseDSRYNKDINLLCALRDLFKAL-QKNSKSSSVSPKMFKKSLGKL 79
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568938986  114 NELFDNYMQQDAHEFLNYLLNTiadiLQEERKQekqngrlrngdvdnedNNSTPDPTWVHEIFQGTLTNETRCLTCET 191
Cdd:pfam00443  80 NPDFSGYKQQDAQEFLLFLLDG----LHEDLNG----------------NHSTENESLITDLFRGQLKSRLKCLSCGE 137
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
40-208 1.69e-14

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 71.84  E-value: 1.69e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  40 GLVNFGNTCYCNSVLQALYFCRPFREKVLA--YKSQPRKKENL------LTCLADLFHSIATQkkKVGVIPPKKFITRLR 111
Cdd:COG5560  267 GLRNLGNTCYMNSALQCLMHTWELRDYFLSdeYEESINEENPLgmhgsvASAYADLIKQLYDG--NLHAFTPSGFKKTIG 344
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986 112 KENELFDNYMQQDAHEFLNYLLNTIADILQEERKQEkQNGRLRNGDVDNEDNNSTPDPTW----------VHEIFQGTLT 181
Cdd:COG5560  345 SFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKP-YTSKPDLSPGDDVVVKKKAKECWwehlkrndsiITDLFQGMYK 423
                        170       180
                 ....*....|....*....|....*...
gi 568938986 182 NETRCLTCETAK-SVPPSSPTSVARPTS 208
Cdd:COG5560  424 STLTCPGCGSVSiTFDPFMDLTLPLPVS 451
 
Name Accession Description Interval E-value
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
40-194 1.91e-76

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 232.59  E-value: 1.91e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  40 GLVNFGNTCYCNSVLQALYFcrpfrekvlayksqprkkENLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDN 119
Cdd:cd02663    1 GLENFGNTCYCNSVLQALYF------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELFDN 62
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568938986 120 YMQQDAHEFLNYLLNTIADILQEERKQEKQNGRLrngdvdNEDNNSTPDPTWVHEIFQGTLTNETRCLTCETAKS 194
Cdd:cd02663   63 YMHQDAHEFLNFLLNEIAEILDAERKAEKANRKL------NNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSS 131
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
39-191 1.38e-40

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 140.66  E-value: 1.38e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986   39 FGLVNFGNTCYCNSVLQALYFCRPFREKVLAY-----KSQPRKKENLLTCLADLFHSIaTQKKKVGVIPPKKFITRLRKE 113
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRIsplseDSRYNKDINLLCALRDLFKAL-QKNSKSSSVSPKMFKKSLGKL 79
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568938986  114 NELFDNYMQQDAHEFLNYLLNTiadiLQEERKQekqngrlrngdvdnedNNSTPDPTWVHEIFQGTLTNETRCLTCET 191
Cdd:pfam00443  80 NPDFSGYKQQDAQEFLLFLLDG----LHEDLNG----------------NHSTENESLITDLFRGQLKSRLKCLSCGE 137
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
40-224 9.59e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 83.02  E-value: 9.59e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  40 GLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQPRKKENL-LTCLA--DLFHSIATQKkkvgviPPKKFITRLRKENEL 116
Cdd:cd02671   26 GLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLqSSFLLnpEKYNDELANQ------APRRLLNALREVNPM 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986 117 FDNYMQQDAHEFLNYLLNTIADIlqeerkqekqngrlrngdvdnednnstpdptwVHEIFQGTLTNETRCLTCET----- 191
Cdd:cd02671  100 YEGYLQHDAQEVLQCILGNIQEL--------------------------------VEKDFQGQLVLRTRCLECETfterr 147
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 568938986 192 ----------AKSVPPSSPTSVARPTSPGLEdLVQSTWAVSTW 224
Cdd:cd02671  148 edfqdisvpvQESELSKSEESSEISPDPKTE-MKTLKWAISQF 189
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
40-189 1.69e-17

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 79.24  E-value: 1.69e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  40 GLVNFGNTCYCNSVLQALYFCRPFREKVL--AYKSQPRKKENLLTCLADLF--HSIATQKKkvgVIPPKKFITRLRKENE 115
Cdd:cd02661    3 GLQNLGNTCFLNSVLQCLTHTPPLANYLLsrEHSKDCCNEGFCMMCALEAHveRALASSGP---GSAPRIFSSNLKQISK 79
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568938986 116 LFDNYMQQDAHEFLNYLLNTiadilqeerkqeKQNGRLRNGDVDNEDNNSTPDPTWVHEIFQGTLTNETRCLTC 189
Cdd:cd02661   80 HFRIGRQEDAHEFLRYLLDA------------MQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNC 141
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
40-190 1.43e-16

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 75.98  E-value: 1.43e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  40 GLVNFGNTCYCNSVLQALYFcrpfrekvlayksqprkkenlltcladlfhsiatqkkkvgvippkkfitrlrkenelfdn 119
Cdd:cd02257    1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568938986 120 yMQQDAHEFLNYLLNTIADILQEERKqekqngrlrngdvdnEDNNSTPDPTWVHEIFQGTLTNETRCLTCE 190
Cdd:cd02257   21 -EQQDAHEFLLFLLDKLHEELKKSSK---------------RTSDSSSLKSLIHDLFGGKLESTIVCLECG 75
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
38-189 7.00e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 74.99  E-value: 7.00e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  38 YFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQPRKKEN--LLTCLADLFHSIATQKKKVGVippkkfiTRLRKENE 115
Cdd:cd02659    2 YVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNksVPLALQRLFLFLQLSESPVKT-------TELTDKTR 74
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568938986 116 LFDN-----YMQQDAHEFLNYLLntiaDILQEERKQEKQNGRLRNgdvdnednnstpdptwvheIFQGTLTNETRCLTC 189
Cdd:cd02659   75 SFGWdslntFEQHDVQEFFRVLF----DKLEEKLKGTGQEGLIKN-------------------LFGGKLVNYIICKEC 130
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
40-195 6.26e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 71.98  E-value: 6.26e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  40 GLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQPRKKE----NLLTCLADLFHSIatqKKKVGVIPPKKFITRLRK--- 112
Cdd:cd02657    1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANqssdNLTNALRDLFDTM---DKKQEPVPPIEFLQLLRMafp 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986 113 ---ENELFDNYMQQDAHEFLNYLLNTIADILQeerkqekqngrlrngdvdnednNSTPDPTWVHEIFQGTLTNETRCLTC 189
Cdd:cd02657   78 qfaEKQNQGGYAQQDAEECWSQLLSVLSQKLP----------------------GAGSKGSFIDQLFGIELETKMKCTES 135

                 ....*.
gi 568938986 190 ETAKSV 195
Cdd:cd02657  136 PDEEEV 141
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
40-208 1.69e-14

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 71.84  E-value: 1.69e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  40 GLVNFGNTCYCNSVLQALYFCRPFREKVLA--YKSQPRKKENL------LTCLADLFHSIATQkkKVGVIPPKKFITRLR 111
Cdd:COG5560  267 GLRNLGNTCYMNSALQCLMHTWELRDYFLSdeYEESINEENPLgmhgsvASAYADLIKQLYDG--NLHAFTPSGFKKTIG 344
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986 112 KENELFDNYMQQDAHEFLNYLLNTIADILQEERKQEkQNGRLRNGDVDNEDNNSTPDPTW----------VHEIFQGTLT 181
Cdd:COG5560  345 SFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKP-YTSKPDLSPGDDVVVKKKAKECWwehlkrndsiITDLFQGMYK 423
                        170       180
                 ....*....|....*....|....*...
gi 568938986 182 NETRCLTCETAK-SVPPSSPTSVARPTS 208
Cdd:COG5560  424 STLTCPGCGSVSiTFDPFMDLTLPLPVS 451
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
40-189 1.00e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 68.94  E-value: 1.00e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  40 GLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQPRKKE----NLLTC-LADLFHSIATQKKKVGVIPPKKFITRLRKEN 114
Cdd:cd02660    2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLScspnSCLSCaMDEIFQEFYYSGDRSPYGPINLLYLSWKHSR 81
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568938986 115 ELfDNYMQQDAHEFLNYLLNTIADilqeerkqekqngrlRNGDVDNEDNNSTPDPTWVHEIFQGTLTNETRCLTC 189
Cdd:cd02660   82 NL-AGYSQQDAHEFFQFLLDQLHT---------------HYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQRC 140
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
40-196 4.33e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 67.06  E-value: 4.33e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  40 GLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQ------------PRKKENLLTCLADLFHSIATQKKKvgVIPPKKFI 107
Cdd:cd02668    1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTedaelknmppdkPHEPQTIIDQLQLIFAQLQFGNRS--VVDPSGFV 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986 108 TRLRkenelFDNYMQQDAHEFLNYLLNTIADILQeerKQEKQNGRlrngdvdnednnstpdpTWVHEIFQGTLTNETRCL 187
Cdd:cd02668   79 KALG-----LDTGQQQDAQEFSKLFLSLLEAKLS---KSKNPDLK-----------------NIVQDLFRGEYSYVTQCS 133

                 ....*....
gi 568938986 188 TCETAKSVP 196
Cdd:cd02668  134 KCGRESSLP 142
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
40-215 6.60e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 66.75  E-value: 6.60e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  40 GLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQPRKKEN-LLTCLADLFHSIATQKKKVGViPPKKFITRLRKENelFD 118
Cdd:cd02664    1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQsVMKKLQLLQAHLMHTQRRAEA-PPDYFLEASRPPW--FT 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986 119 NYMQQDAHEFLNYLLntiaDILQeerkqekqngrlrngdvdnednnstpdpTWVHEIFQGTLTNETRCLTCE-TAKSVPP 197
Cdd:cd02664   78 PGSQQDCSEYLRYLL----DRLH----------------------------TLIEKMFGGKLSTTIRCLNCNsTSARTER 125
                        170
                 ....*....|....*...
gi 568938986 198 SSPTSVARPTspgLEDLV 215
Cdd:cd02664  126 FRDLDLSFPS---VQDLL 140
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
40-150 3.00e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 61.57  E-value: 3.00e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  40 GLVNFGNTCYCNSVLQALY----FCRPFREKVLAYKSQPRKKENLLTC-LADLFHSIATQKKKVGV------------IP 102
Cdd:cd02658    1 GLRNLGNSCYLNSVLQVLFsipsFQWRYDDLENKFPSDVVDPANDLNCqLIKLADGLLSGRYSKPAslksendpyqvgIK 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 568938986 103 PKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIAdilQEERKQEKQN 150
Cdd:cd02658   81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLD---RESFKNLGLN 125
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
38-128 9.87e-09

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 54.88  E-value: 9.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986   38 YFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQ-PRKKENLLTCLADLFHSIATQKKKVGVippkkfiTRLRKEN-- 114
Cdd:COG5077   193 YVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDhPRGRDSVALALQRLFYNLQTGEEPVDT-------TELTRSFgw 265
                          90
                  ....*....|....
gi 568938986  115 ELFDNYMQQDAHEF 128
Cdd:COG5077   266 DSDDSFMQHDIQEF 279
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
40-174 1.15e-08

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 54.04  E-value: 1.15e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  40 GLVNFGNTCYCNSVLQALYFCRPfreKVLAYKSQPRKKENLLTCLADLFHSIATQKKKVgvippkKFITRLRKENE---- 115
Cdd:COG5533    1 GLPNLGNTCFMNSVLQILALYLP---KLDELLDDLSKELKVLKNVIRKPEPDLNQEEAL------KLFTALWSSKEhkvg 71
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568938986 116 -LFDNYMQQDAHEFLNYLLNTIADIL---QEERKQEKQNGRLRNGDVD-NEDNNSTPDPTWVHE 174
Cdd:COG5533   72 wIPPMGSQEDAHELLGKLLDELKLDLvnsFTIRIFKTTKDKKKTSTGDwFDIIIELPDQTWVNN 135
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
40-196 1.30e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 53.93  E-value: 1.30e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  40 GLVNFGNTCYCNSVLQALYFCrPFREKVLayksqprkKENlltcladlfhsiatqkkkvgvipPKKFITRLRKENELFDN 119
Cdd:cd02667    1 GLSNLGNTCFFNAVMQNLSQT-PALRELL--------SET-----------------------PKELFSQVCRKAPQFKG 48
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568938986 120 YMQQDAHEFLNYLLNtiadilqeerkqekqngRLRngdvdnednnstpdpTWVHEIFQGTLTNETRCLTCETAKSVP 196
Cdd:cd02667   49 YQQQDSHELLRYLLD-----------------GLR---------------TFIDSIFGGELTSTIMCESCGTVSLVY 93
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
38-185 8.54e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 51.94  E-value: 8.54e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  38 YFGLVNFGNTCYCNSVLQALYFCRPFREKVLA---YKSQPRKKENLLTCLADLFHSIATQKKKVGVIPPKKF---ITRLR 111
Cdd:cd02669  119 FVGLNNIKNNDYANVIIQALSHVKPIRNFFLLyenYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELlqaVSKVS 198
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568938986 112 KENelFDNYMQQDAHEFLNYLLNTIADILQEERKqekqngrlrngdvdneDNNSTpdptwVHEIFQGTLTNETR 185
Cdd:cd02669  199 KKK--FSITEQSDPVEFLSWLLNTLHKDLGGSKK----------------PNSSI-----IHDCFQGKVQIETQ 249
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
41-225 7.37e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 48.68  E-value: 7.37e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  41 LVNFGNTCYCNSVLQALyfcrpfrekvlayksqprkkenlltcladlfhsiatqkkkvgvippkkfiTRLRKENELFDNY 120
Cdd:cd02673    2 LVNTGNSCYFNSTMQAL--------------------------------------------------SSIGKINTEFDND 31
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986 121 MQQDAHEFLNYLLNTIADILQEERKQEKqngrlrngdvDNEDNNSTPDPTwvhEIFQGTLTNETRCLTC---ETAKSVPP 197
Cdd:cd02673   32 DQQDAHEFLLTLLEAIDDIMQVNRTNVP----------PSNIEIKRLNPL---EAFKYTIESSYVCIGCsfeENVSDVGN 98
                        170       180
                 ....*....|....*....|....*...
gi 568938986 198 SSPTSVARPTSPGLEDLVQSTwavSTWS 225
Cdd:cd02673   99 FLDVSMIDNKLDIDELLISNF---KTWS 123
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
40-141 2.00e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 47.36  E-value: 2.00e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  40 GLVNFGNTCYCNSVLQALYFCRPFREkvlayksqprkkenlltcladlfhsiatqkkkvgvippkkFITRLRKenelfdn 119
Cdd:cd02662    1 GLVNLGNTCFMNSVLQALASLPSLIE----------------------------------------YLEEFLE------- 33
                         90       100
                 ....*....|....*....|..
gi 568938986 120 ymQQDAHEFLNYLLNTIADILQ 141
Cdd:cd02662   34 --QQDAHELFQVLLETLEQLLK 53
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
40-189 3.72e-06

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 46.88  E-value: 3.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986   40 GLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQPRKKENLLTC-LADLFHSIATQKKK----------VGVIPPKKFIT 108
Cdd:pfam13423   2 GLETHIPNSYTNSLLQLLRFIPPLRNLALSHLATECLKEHCLLCeLGFLFDMLEKAKGKncqasnflraLSSIPEASALG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  109 RLRKENELFDNY----MQQdahEFLNYLLNTIAdilQEERKQEKqngrlrngdvdnednNSTPDPTWVHEIFQGTLTNET 184
Cdd:pfam13423  82 LLDEDRETNSAIslssLIQ---SFNRFLLDQLS---SEENSTPP---------------NPSPAESPLEQLFGIDAETTI 140

                  ....*
gi 568938986  185 RCLTC 189
Cdd:pfam13423 141 RCSNC 145
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
40-70 5.20e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 46.33  E-value: 5.20e-06
                         10        20        30
                 ....*....|....*....|....*....|.
gi 568938986  40 GLVNFGNTCYCNSVLQALYFCRPFREKVLAY 70
Cdd:cd02666    3 GLDNIGNTCYLNSLLQYFFTIKPLRDLVLNF 33
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
40-190 6.76e-05

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 42.66  E-value: 6.76e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938986  40 GLVNFGNTCYCNSVLQalyfcrpfrekvlayksqprkkenlltCLADlfhsiatqkkkvgvippkkfitrlrkenelfdn 119
Cdd:cd02674    1 GLRNLGNTCYMNSILQ---------------------------CLSA--------------------------------- 20
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568938986 120 yMQQDAHEFLNYLLNTIADILQeerkqekqngrlrngdvdnednnstpdptwvhEIFQGTLTNETRCLTCE 190
Cdd:cd02674   21 -DQQDAQEFLLFLLDGLHSIIV--------------------------------DLFQGQLKSRLTCLTCG 58
Peptidase_C19P cd02672
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
38-92 1.44e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239137 [Multi-domain]  Cd Length: 268  Bit Score: 38.65  E-value: 1.44e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 568938986  38 YFGLVNFGNTCYCNSVLQALYFCRPFReKVLAYKSQPRKKEN-LLTCLADLFHSIA 92
Cdd:cd02672   15 YAGLENHITNSYCNSLLQLLYFIPPFR-NFTAIILVACPKEScLLCELGYLFSTLI 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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