NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|568934543|ref|XP_006504172|]
View 

UV-stimulated scaffold protein A isoform X2 [Mus musculus]

Protein Classification

UV-stimulated scaffold protein A( domain architecture ID 10560856)

UV-stimulated scaffold protein A is a DUF2043 domain-containing protein that acts as a factor involved in transcription-coupled nucleotide excision repair (TC-NER) in response to UV damage

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF2043 pfam09740
Uncharacterized conserved protein (DUF2043); This is a 100 residue conserved region of a ...
 290-396 1.69e-60

Uncharacterized conserved protein (DUF2043); This is a 100 residue conserved region of a family of proteins found from fungi to humans. This region contains three conserved Cysteines and a motif of {CP}{y/l}{HG}.


:

Pssm-ID: 462871  Cd Length: 106  Bit Score: 193.97  E-value: 1.69e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934543  290 ARAPIVPFGVDLCYWGQEQlTAGKILKSDSQ-HRFWKPSEVEEeVDSAHVSEMLHSRHITFSGTFEPVQHKCRALRPNGR 368
Cdd:pfam09740   1 AKAPVVPFGLDLYYWGEEQ-EAGKVPKNNSGlHRFWGPSDVEE-VISAEKLAELNQRQITFAGKFEPVKHPCRAPLPNGG 78

                          90       100
                  ....*....|....*....|....*...
gi 568934543  369 LCERQDRLKCPFHGKIIPRDDKGQPLNP 396
Cdd:pfam09740  79 LCPRRDRLKCPFHGKIIPRDDEGRPINP 106
 
Name Accession Description Interval E-value
DUF2043 pfam09740
Uncharacterized conserved protein (DUF2043); This is a 100 residue conserved region of a ...
 290-396 1.69e-60

Uncharacterized conserved protein (DUF2043); This is a 100 residue conserved region of a family of proteins found from fungi to humans. This region contains three conserved Cysteines and a motif of {CP}{y/l}{HG}.


Pssm-ID: 462871  Cd Length: 106  Bit Score: 193.97  E-value: 1.69e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934543  290 ARAPIVPFGVDLCYWGQEQlTAGKILKSDSQ-HRFWKPSEVEEeVDSAHVSEMLHSRHITFSGTFEPVQHKCRALRPNGR 368
Cdd:pfam09740   1 AKAPVVPFGLDLYYWGEEQ-EAGKVPKNNSGlHRFWGPSDVEE-VISAEKLAELNQRQITFAGKFEPVKHPCRAPLPNGG 78

                          90       100
                  ....*....|....*....|....*...
gi 568934543  369 LCERQDRLKCPFHGKIIPRDDKGQPLNP 396
Cdd:pfam09740  79 LCPRRDRLKCPFHGKIIPRDDEGRPINP 106
 
Name Accession Description Interval E-value
DUF2043 pfam09740
Uncharacterized conserved protein (DUF2043); This is a 100 residue conserved region of a ...
 290-396 1.69e-60

Uncharacterized conserved protein (DUF2043); This is a 100 residue conserved region of a family of proteins found from fungi to humans. This region contains three conserved Cysteines and a motif of {CP}{y/l}{HG}.


Pssm-ID: 462871  Cd Length: 106  Bit Score: 193.97  E-value: 1.69e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934543  290 ARAPIVPFGVDLCYWGQEQlTAGKILKSDSQ-HRFWKPSEVEEeVDSAHVSEMLHSRHITFSGTFEPVQHKCRALRPNGR 368
Cdd:pfam09740   1 AKAPVVPFGLDLYYWGEEQ-EAGKVPKNNSGlHRFWGPSDVEE-VISAEKLAELNQRQITFAGKFEPVKHPCRAPLPNGG 78

                          90       100
                  ....*....|....*....|....*...
gi 568934543  369 LCERQDRLKCPFHGKIIPRDDKGQPLNP 396
Cdd:pfam09740  79 LCPRRDRLKCPFHGKIIPRDDEGRPINP 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH