|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
205-849 |
2.03e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.43 E-value: 2.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 205 LVAREQEIAAVQARMQASYRDHVKEVQQLQGKIRTLQEQLEnGPNTQLARLQQENSILRDALNQATSQVeSKQNTELAKL 284
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYALANEI-SRLEQQKQIL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 285 RQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASH-----------------KESEEALQKRLEEVTRE 347
Cdd:TIGR02168 308 RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELesleaeleeleaeleelESRLEELEEQLETLRSK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 348 LCRAQTSHANLRADAEKAQEQQQRVAELHSKLQS--SEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQ 425
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQeiEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELR 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 426 AQDTQASHA------EANQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDL---------REKNWKAMEAlalaer 490
Cdd:TIGR02168 468 EELEEAEQAldaaerELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILgvlselisvDEGYEAAIEA------ 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 491 ACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSISA------HQNYAEWLQEFKEKGSELLKKPPTLEPSMD-- 562
Cdd:TIGR02168 542 ALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGteiqgnDREILKNIEGFLGVAKDLVKFDPKLRKALSyl 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 563 -----IVLKLREAEETQNSLQAEcdqYRTILAE--------------TEGMLKDLQKSVEEEERvwKAKVGAAEEELHKS 623
Cdd:TIGR02168 622 lggvlVVDDLDNALELAKKLRPG---YRIVTLDgdlvrpggvitggsAKTNSSILERRREIEEL--EEKIEELEEKIAEL 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 624 RVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSDE 703
Cdd:TIGR02168 697 EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 704 LALVRQQLSDMRSHVEDgdvaGSPAVPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRa 783
Cdd:TIGR02168 777 LAEAEAEIEELEAQIEQ----LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS- 851
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568918952 784 agplessgkEEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQLGKAED 849
Cdd:TIGR02168 852 ---------EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
216-804 |
1.77e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.22 E-value: 1.77e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 216 QARMQASYRDHVKEVQQLQG-----KIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQNtELAKLRQELSK 290
Cdd:COG1196 208 QAEKAERYRELKEELKELEAellllKLRELEAELEEL-EAELEELEAELEELEAELAELEAELEELRL-ELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 291 VNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQ 370
Cdd:COG1196 286 AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 371 RVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQV 450
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 451 ScLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERAcEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSI 530
Cdd:COG1196 446 E-AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE-LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 531 SAHQNYAEWLQEFKEKGSELLkkppTLEPSMDIVLKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVWK 610
Cdd:COG1196 524 GAVAVLIGVEAAYEAALEAAL----AAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 611 AKVGAAEEELHKSRVTVKHLEDIVEK--LKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQS 688
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGRtlVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 689 QLDEAKSEAQKQSDELALVRQQLSDMRSHVEDgdvagspavppAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQ 768
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAE-----------AEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
570 580 590
....*....|....*....|....*....|....*.
gi 568918952 769 RtacriqEELEKLRAAGPLESSGKEEITQLKERLEK 804
Cdd:COG1196 749 E------EEALEELPEPPDLEELERELERLEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
256-855 |
2.13e-16 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 84.42 E-value: 2.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 256 QQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKElVEKSEASRQEEQQRKALEAKAATFEKQV-----LQLQASH 330
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEE-ARKAEDARKAEEARKAEDAKRVEIARKAedarkAEEARKA 1172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 331 KESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKeaRAENSQL 410
Cdd:PTZ00121 1173 EDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAK--KAEEERN 1250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 411 TERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLR---EKNWKAMEALAL 487
Cdd:PTZ00121 1251 NEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKkadEAKKKAEEAKKK 1330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 488 AERA---CEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSISAHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIV 564
Cdd:PTZ00121 1331 ADAAkkkAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL 1410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 565 LKLREAEETQNSLQAECDQYRTI-----LAETEGMLKDLQKSVEEEERVWKAKVGAAE----EELHKSRVTVKHLEDIVE 635
Cdd:PTZ00121 1411 KKAAAAKKKADEAKKKAEEKKKAdeakkKAEEAKKADEAKKKAEEAKKAEEAKKKAEEakkaDEAKKKAEEAKKADEAKK 1490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 636 KLKGELESSDQVREHtshlEAELEKHMAAASAECQNYAKEVAGLrqlllESQSQLDEA-KSEAQKQSDEL--------AL 706
Cdd:PTZ00121 1491 KAEEAKKKADEAKKA----AEAKKKADEAKKAEEAKKADEAKKA-----EEAKKADEAkKAEEKKKADELkkaeelkkAE 1561
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 707 VRQQLSDMRSHVEDGDVAGSPA--VPPAEQDPMKLKTQLERTEATLEAEQTRRQkltaefEEAQRTACRIQEELEKLRAA 784
Cdd:PTZ00121 1562 EKKKAEEAKKAEEDKNMALRKAeeAKKAEEARIEEVMKLYEEEKKMKAEEAKKA------EEAKIKAEELKKAEEEKKKV 1635
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568918952 785 GPLESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQLGKAEDGSSSKE 855
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE 1706
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
155-846 |
2.00e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.71 E-value: 2.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 155 LKRQLEEKEK-LLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARM---QASYRDHVKEV 230
Cdd:TIGR02168 218 LKAELRELELaLLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIeelQKELYALANEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 231 QQLQGKIRTLQEQLEN------GPNTQLARLQQENSILRDALNQATSQVESKQN---------TELAKLRQELSKVNKEL 295
Cdd:TIGR02168 298 SRLEQQKQILRERLANlerqleELEAQLEELESKLDELAEELAELEEKLEELKEelesleaelEELEAELEELESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 296 VEKSEASR----QEEQQRKALEAKAATFEKQVLQLQASHKESEE---------------ALQKRLEEVTRELCRAQTSHA 356
Cdd:TIGR02168 378 EEQLETLRskvaQLELQIASLNNEIERLEARLERLEDRRERLQQeieellkkleeaelkELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 357 NLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKC-------EELSSLHGQLKEARAENSQLT-------ERIR------- 415
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLdslerlqENLEGFSEGVKALLKNQSGLSgilgvlsELISvdegyea 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 416 SIEALL-------------EAGQAQDTQASH------------------------------------------------- 433
Cdd:TIGR02168 538 AIEAALggrlqavvvenlnAAKKAIAFLKQNelgrvtflpldsikgteiqgndreilkniegflgvakdlvkfdpklrka 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 434 --------------AEANQQQTRLKELESQVS------------------------CLEKETSELKEAMEQQKGKNNDLR 475
Cdd:TIGR02168 618 lsyllggvlvvddlDNALELAKKLRPGYRIVTldgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKIAELE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 476 eknwKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSISAHQNYAewLQEFKEKGSELLKKPP 555
Cdd:TIGR02168 698 ----KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE--LTELEAEIEELEERLE 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 556 TLEPsmdivlKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEER---VWKAKVGAAEEELHKSRVTVKHLED 632
Cdd:TIGR02168 772 EAEE------ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEeaaNLRERLESLERRIAATERRLEDLEE 845
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 633 IVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLS 712
Cdd:TIGR02168 846 QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA 925
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 713 DMRSHVEDgdvagspavppAEQDPMKLKTQL-ERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLraaGPLESSG 791
Cdd:TIGR02168 926 QLELRLEG-----------LEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL---GPVNLAA 991
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*.
gi 568918952 792 KEEITQLKERLEKEKRLTSDLGRAAIKLQELL-KTTQEQLTKEKDTVKKLQEQLGK 846
Cdd:TIGR02168 992 IEEYEELKERYDFLTAQKEDLTEAKETLEEAIeEIDREARERFKDTFDQVNENFQR 1047
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
142-752 |
1.45e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 1.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 142 WHKATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQA 221
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 222 SYRdhvkEVQQLQGKIRTLQEQLENgpntqlarLQQENSILRDALNQATSQVESKQNtELAKLRQELSKVNKELVEKSEA 301
Cdd:COG1196 314 LEE----RLEELEEELAELEEELEE--------LEEELEELEEELEEAEEELEEAEA-ELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 302 SRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQS 381
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 382 SEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKElesqvscleketselk 461
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG---------------- 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 462 eameqqkgknnDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSISAhqnyaewlq 541
Cdd:COG1196 525 -----------AVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRA--------- 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 542 efkEKGSELLKKPPTLEPSMDIVLKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVwkaKVGAAEEELH 621
Cdd:COG1196 585 ---RAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE---VTLEGEGGSA 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 622 KSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAEcqnyakevaglRQLLLESQSQLDEAKSEAQKQS 701
Cdd:COG1196 659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEE-----------ERELAEAEEERLEEELEEEALE 727
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 568918952 702 DELALVRQQLSDMRSHVEDGDVAGSPAVPPAEQDPMKLKTQLERTEATLEA 752
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
152-835 |
1.68e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.63 E-value: 1.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 152 VAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQ 231
Cdd:PTZ00121 1154 VEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAE 1233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 232 QLQGKIRTLQeQLENGPNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNkELVEKSEASRQEEQQRKA 311
Cdd:PTZ00121 1234 EAKKDAEEAK-KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD-EAKKAEEKKKADEAKKKA 1311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 312 LEAKAATFEKQVLQlqaSHKESEEALQKRLEEvTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKlqssevEVKSKCE 391
Cdd:PTZ00121 1312 EEAKKADEAKKKAE---EAKKKADAAKKKAEE-AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE------EAKKKAD 1381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 392 ELSSLHGQLKEARAENSQLTERIRSIEALLEAgqaqdtqashAEANQQQTRLKELESQVscleKETSELKEAMEQQKgKN 471
Cdd:PTZ00121 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKKA----------AAAKKKADEAKKKAEEK----KKADEAKKKAEEAK-KA 1446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 472 NDLREKNWKAMEALALAERAceEKLRSLTQAKEESEKQLHLAEAQTKEtllallpglsisahqnyaewlQEFKEKGSELL 551
Cdd:PTZ00121 1447 DEAKKKAEEAKKAEEAKKKA--EEAKKADEAKKKAEEAKKADEAKKKA---------------------EEAKKKADEAK 1503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 552 KKpptlEPSMDIVLKLREAEETQNSLQAEcdqyrtiLAETEGMLKDLQKS--VEEEERVWKAKVGAAEEELHKSRVTVKH 629
Cdd:PTZ00121 1504 KA----AEAKKKADEAKKAEEAKKADEAK-------KAEEAKKADEAKKAeeKKKADELKKAEELKKAEEKKKAEEAKKA 1572
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 630 LEDIVEKLKG--ELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAglrqlllESQSQLDEAKSEAQKQSDELALV 707
Cdd:PTZ00121 1573 EEDKNMALRKaeEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA-------EELKKAEEEKKKVEQLKKKEAEE 1645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 708 RQQLSDMRSHVEDGDVAGSPAVPPAEQDpmklKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAGPL 787
Cdd:PTZ00121 1646 KKKAEELKKAEEENKIKAAEEAKKAEED----KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 568918952 788 ---ESSGKEEITQLKERLEKEKRLTSDLgraaiKLQELLKTTQEQLTKEKD 835
Cdd:PTZ00121 1722 kkaEEENKIKAEEAKKEAEEDKKKAEEA-----KKDEEEKKKIAHLKKEEE 1767
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
144-698 |
9.82e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.93 E-value: 9.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 144 KATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASY 223
Cdd:PTZ00121 1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 224 R----DHVKEVQQLQGKIRTLQEQLENGPNTQLARLQQEnsilrdalnQATSQVESKQNTELAKLRQELSKVNKELVEKS 299
Cdd:PTZ00121 1403 DkkkaDELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE---------EAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD 1473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 300 EASRQEEQQRKALEA--KAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHS 377
Cdd:PTZ00121 1474 EAKKKAEEAKKADEAkkKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 378 KLQSSEVEVKSKCEELSSLHGQLKEA--RAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVSCLEK 455
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDKNMAlrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 456 ETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKEtllallpglsisahQN 535
Cdd:PTZ00121 1634 KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE--------------AE 1699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 536 YAEWLQEFKEKGSELLKKPPtlepsmdivlKLREAEEtQNSLQAEcdQYRTILAETEGMLKDLQKSVEEEERV--WKAKV 613
Cdd:PTZ00121 1700 EAKKAEELKKKEAEEKKKAE----------ELKKAEE-ENKIKAE--EAKKEAEEDKKKAEEAKKDEEEKKKIahLKKEE 1766
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 614 GAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEA 693
Cdd:PTZ00121 1767 EKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEA 1846
|
....*
gi 568918952 694 KSEAQ 698
Cdd:PTZ00121 1847 DAFEK 1851
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
251-834 |
1.12e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.47 E-value: 1.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 251 QLARLQQENSILRDALNQATSQVEskqntELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLqash 330
Cdd:PRK03918 201 ELEEVLREINEISSELPELREELE-----KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEEL---- 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 331 KESEEALQKRLEEVTrELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQL 410
Cdd:PRK03918 272 KKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKEL 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 411 TERIRSIEALLEAgqAQDTQASHAEANQQQTRLK-----ELESQVSCLEKETSELKEAMEQQKGKNNDLREKNW---KAM 482
Cdd:PRK03918 351 EKRLEELEERHEL--YEEAKAKKEELERLKKRLTgltpeKLEKELEELEKAKEEIEEEISKITARIGELKKEIKelkKAI 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 483 EALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLpglsisahQNYAEWLQEFKEKGSELLKKPPTLEPSMD 562
Cdd:PRK03918 429 EELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEI--------EEKERKLRKELRELEKVLKKESELIKLKE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 563 IVLKLREAEETQNS-----LQAECDQYRTI---LAETEGMLKDLQKSVEEEERVwKAKVGAAEEELHKSRVTVKHLEDIV 634
Cdd:PRK03918 501 LAEQLKELEEKLKKynleeLEKKAEEYEKLkekLIKLKGEIKSLKKELEKLEEL-KKKLAELEKKLDELEEELAELLKEL 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 635 EKLKgeLESSDQVREHTSHLEAELEKHMAAASAEcqnyaKEVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDM 714
Cdd:PRK03918 580 EELG--FESVEELEERLKELEPFYNEYLELKDAE-----KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEEL 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 715 RSHVEDGDVAGspavppAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQE---ELEKLRAAgplessg 791
Cdd:PRK03918 653 EKKYSEEEYEE------LREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKakkELEKLEKA------- 719
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 568918952 792 KEEITQLKERLEKEKRLTSDlgRAAIKLQELLKTTQEQLTKEK 834
Cdd:PRK03918 720 LERVEELREKVKKYKALLKE--RALSKVGEIASEIFEELTEGK 760
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
157-675 |
1.58e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.08 E-value: 1.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 157 RQLEEKEKllATEQEDAAVAKSKLRELNKEmaSEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQQLQGK 236
Cdd:PTZ00121 1296 KKAEEKKK--ADEAKKKAEEAKKADEAKKK--AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 237 IRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKA 316
Cdd:PTZ00121 1372 KKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 317 ATFEK---QVLQLQASHKESEEALQKRLEEVTR-ELCRAQTSHANLRAD-AEKAQEQQQRVAELHSKLQSSEVEVKSKCE 391
Cdd:PTZ00121 1452 KAEEAkkaEEAKKKAEEAKKADEAKKKAEEAKKaDEAKKKAEEAKKKADeAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 392 ELSslhgQLKEAR-AENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVSCLEKETSE-LKEAMEQQKG 469
Cdd:PTZ00121 1532 EAK----KADEAKkAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEvMKLYEEEKKM 1607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 470 KNNDLReknwKAMEALALAE--RACEEKLRSLTQAKEESEKQLHLAEAQTKETllallpglsisahqnyaewlQEFKEKG 547
Cdd:PTZ00121 1608 KAEEAK----KAEEAKIKAEelKKAEEEKKKVEQLKKKEAEEKKKAEELKKAE--------------------EENKIKA 1663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 548 SELLKKPPTlepsmdivlKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVWKAKVGAAEEELHKSRVTV 627
Cdd:PTZ00121 1664 AEEAKKAEE---------DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE 1734
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 568918952 628 KHLEDIVEKLKG-ELESSDQVREHTSHLEAELEKHMAAASAECQNYAKE 675
Cdd:PTZ00121 1735 AKKEAEEDKKKAeEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
224-844 |
1.94e-09 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 61.78 E-value: 1.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 224 RDHVKEVQQLQGKIRTLQEQLENgPNTQLARLQQENSILRDALNQATSQVESKQnTELAKLRQELSKVNKELVEKSEASR 303
Cdd:pfam12128 230 IQAIAGIMKIRPEFTKLQQEFNT-LESAELRLSHLHFGYKSDETLIASRQEERQ-ETSAELNQLLRTLDDQWKEKRDELN 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 304 QE-----------EQQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEK-----AQE 367
Cdd:pfam12128 308 GElsaadaavakdRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRrrskiKEQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 368 QQQRVAELHSKLQSS-EVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEA------GQAQDTQASHAEANQQQ 440
Cdd:pfam12128 388 NNRDIAGIKDKLAKIrEARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSrlgelkLRLNQATATPELLLQLE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 441 TRLKELESQVSCLEKETSELKEAMEQQKgknnDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHlaeaqtkeT 520
Cdd:pfam12128 468 NFDERIERAREEQEAANAEVERLQSELR----QARKRRDQASEALRQASRRLEERQSALDELELQLFPQAG--------T 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 521 LLALLpglsisaHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIV----------LKLREAEETQNSLQAECDQYRTILAE 590
Cdd:pfam12128 536 LLHFL-------RKEAPDWEQSIGKVISPELLHRTDLDPEVWDGsvggelnlygVKLDLKRIDVPEWAASEEELRERLDK 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 591 TEGML---KDLQKSVEEEERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGELEsSDQVRehtshLEAELEKHMAAASA 667
Cdd:pfam12128 609 AEEALqsaREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQ-SEKDK-----KNKALAERKDSANE 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 668 ECQNYAKEvagLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAGSPAVPPAEQDPMK-LKTQLERT 746
Cdd:pfam12128 683 RLNSLEAQ---LKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKaLETWYKRD 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 747 EATLEAEQTRRQKLTAEFEEAQRTACRI-QEELEKLRAAGPLESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQELLKT 825
Cdd:pfam12128 760 LASLGVDPDVIAKLKREIRTLERKIERIaVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKL 839
|
650
....*....|....*....
gi 568918952 826 TQEQLTKEKDTVKKLQEQL 844
Cdd:pfam12128 840 RRAKLEMERKASEKQQVRL 858
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
363-843 |
3.96e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.44 E-value: 3.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 363 EKAQEQQQRVAELHSKLQSSEVEVKSKCEELSS--LHGQLKEARAENSQLTERIRSIEALLEA-----GQAQDTQASHAE 435
Cdd:PRK02224 169 ERASDARLGVERVLSDQRGSLDQLKAQIEEKEEkdLHERLNGLESELAELDEEIERYEEQREQaretrDEADEVLEEHEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 436 ANQQQTRLK----ELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALAL---AERACEEKLRSLTQAKEESEK 508
Cdd:PRK02224 249 RREELETLEaeieDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLddaDAEAVEARREELEDRDEELRD 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 509 QL---------HLAEAQTKETLLALLPGLSISAH----------QNYAEWLQEFKEKGSELLKKPPTLEPSM-DIVLKLR 568
Cdd:PRK02224 329 RLeecrvaaqaHNEEAESLREDADDLEERAEELReeaaeleselEEAREAVEDRREEIEELEEEIEELRERFgDAPVDLG 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 569 EAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVWKA-KVGAAEEELHKSRV--TVKHLEDIVEKLKGELEssd 645
Cdd:PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgKCPECGQPVEGSPHveTIEEDRERVEELEAELE--- 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 646 QVREHTSHLEAELEKHMAAASAEcqnyaKEVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAG 725
Cdd:PRK02224 486 DLEEEVEEVEERLERAEDLVEAE-----DRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 726 SPAVPPAEQDPMKLKTqLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAGPLESSGKEeitQLKERLEKE 805
Cdd:PRK02224 561 AEAEEEAEEAREEVAE-LNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRE---RLAEKRERK 636
|
490 500 510
....*....|....*....|....*....|....*....
gi 568918952 806 KRLTSDLGRAAI-KLQELLKTTQEQLTKEKDTVKKLQEQ 843
Cdd:PRK02224 637 RELEAEFDEARIeEAREDKERAEEYLEQVEEKLDELREE 675
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
228-464 |
6.45e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.01 E-value: 6.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 228 KEVQQLQGKIRTLQEQLENgPNTQLARLQQENSILRDALNQATSQVeSKQNTELAKLRQELSKVNKELvekSEASRQEEQ 307
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAE-LEKELAALKKEEKALLKQLAALERRI-AALARRIRALEQELAALEAEL---AELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 308 QRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVK 387
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568918952 388 skceELSSLHGQLKEARAENSQLTERIRSIEALLEagqaQDTQASHAEANQQQTRLKELESQVSCLEKETSELKEAM 464
Cdd:COG4942 175 ----ELEALLAELEEERAALEALKAERQKLLARLE----KELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
224-419 |
1.33e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.69 E-value: 1.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 224 RDHVKEVQQLQGKIRTLQEQLEngpntQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKELVEKSEASR 303
Cdd:COG4913 231 VEHFDDLERAHEALEDAREQIE-----LLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 304 QEEQQRKALEAKAATFEKQVLQLQASHKES----EEALQKRLEEVTRELCRAQTSHANLRADAEKA-----------QEQ 368
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNggdrLEQLEREIERLERELEERERRRARLEALLAALglplpasaeefAAL 385
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568918952 369 QQRVAELHSKLQSSEVEVKskcEELSSLHGQLKEARAENSQLTERIRSIEA 419
Cdd:COG4913 386 RAEAAALLEALEEELEALE---EALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
153-463 |
1.47e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 1.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 153 AILKRQLEEKEKLlATEQEDAAVAKSKLRELNK----EMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQ---ASYRD 225
Cdd:TIGR02169 191 LIIDEKRQQLERL-RREREKAERYQALLKEKREyegyELLKEKEALERQKEAIERQLASLEEELEKLTEEISeleKRLEE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 226 HVKEVQQLQGKIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNtELAKLRQELSKVNKELVEKSEASRQE 305
Cdd:TIGR02169 270 IEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEE-RLAKLEAEIDKLLAEIEELEREIEEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 306 EQQRKALEA----KAATFEKQVLQLQASHKESEEA------LQKRLEEVTRELCRAQTshaNLRADAEKAQEQQQRVAEL 375
Cdd:TIGR02169 349 RKRRDKLTEeyaeLKEELEDLRAELEEVDKEFAETrdelkdYREKLEKLKREINELKR---ELDRLQEELQRLSEELADL 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 376 HSKLQSSEvevkskcEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQAShAEANQQQTRLKELESQVSCLEK 455
Cdd:TIGR02169 426 NAAIAGIE-------AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK-EEYDRVEKELSKLQRELAEAEA 497
|
....*...
gi 568918952 456 ETSELKEA 463
Cdd:TIGR02169 498 QARASEER 505
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
204-499 |
1.71e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 1.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 204 QLVAREQEIAAVQARMQASYRDHVKEVQQLQGKIRTLQEQLENGPNtQLARLQQENSILRDALNQATSQVESKQNtELAK 283
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK-EIEQLEQEEEKLKERLEELEEDLSSLEQ-EIEN 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 284 LRQELSKVNKELVEKSEASRQEEQQRKALEAKAAtfEKQVLQLQAsHKESEEALQKRLEEVTRELCRAQTSHANLRADAE 363
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQA-ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 364 KA-QEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQdtqashaeANQQQTR 442
Cdd:TIGR02169 833 KEiQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ--------LRELERK 904
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568918952 443 LKELESQVSCLEKETSELKEAMEQQKGKNNDLrEKNWKAM----------EALALAERACEEKLRSL 499
Cdd:TIGR02169 905 IEELEAQIEKKRKRLSELKAKLEALEEELSEI-EDPKGEDeeipeeelslEDVQAELQRVEEEIRAL 970
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
155-658 |
2.08e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.66 E-value: 2.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 155 LKRQLEEKE------KLLATEQEDAAV-AKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHV 227
Cdd:PRK02224 192 LKAQIEEKEekdlheRLNGLESELAELdEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 228 KEVQQLQGKIRTLQEQLEngpntqlaRLQQENSILRdalnqATSQVESKQNTELAKLRQELSKVNKELVEKSEASRQEeQ 307
Cdd:PRK02224 272 REREELAEEVRDLRERLE--------ELEEERDDLL-----AEAGLDDADAEAVEARREELEDRDEELRDRLEECRVA-A 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 308 QRKALEAKAATFEKQVLQLQASHKESE-EALQKRLEEVTRELCRAQTSHANLRADAEKAQEqqqRVAELHSKLQSSEVEV 386
Cdd:PRK02224 338 QAHNEEAESLREDADDLEERAEELREEaAELESELEEAREAVEDRREEIEELEEEIEELRE---RFGDAPVDLGNAEDFL 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 387 KSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQ----AQDTQAS-HAEANQQ--------QTRLKELESQVSCL 453
Cdd:PRK02224 415 EELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecGQPVEGSpHVETIEEdrerveelEAELEDLEEEVEEV 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 454 EKETSELKEAMEQQKGKNnDLREKNWKAMEALALAERACEEK-------------LRSLTQAKEESEKQLHLAEAQTKET 520
Cdd:PRK02224 495 EERLERAEDLVEAEDRIE-RLEERREDLEELIAERRETIEEKreraeelreraaeLEAEAEEKREAAAEAEEEAEEAREE 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 521 LLALLPGL---------------SISAHQNYAEWLQEFKEKGSELLKKP----PTLEPSMDIVLKLREA--EETQNSLQA 579
Cdd:PRK02224 574 VAELNSKLaelkerieslerirtLLAAIADAEDEIERLREKREALAELNderrERLAEKRERKRELEAEfdEARIEEARE 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 580 ECDQYRTILAETEGMLKDLqksvEEEERVWKAKVGAAE---EELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEA 656
Cdd:PRK02224 654 DKERAEEYLEQVEEKLDEL----REERDDLQAEIGAVEnelEELEELRERREALENRVEALEALYDEAEELESMYGDLRA 729
|
..
gi 568918952 657 EL 658
Cdd:PRK02224 730 EL 731
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
180-654 |
2.93e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 2.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 180 LRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARmQASYRDHVKEVQQLQGKIRTLQEQLENGPNT-QLARLQQE 258
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEK-EEEYAELQEELEELEEELEELEAELEELREElEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 259 NSILRDALNQATSQVESKQnTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQ 338
Cdd:COG4717 127 LLPLYQELEALEAELAELP-ERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQ 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 339 KRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELhsklqssevEVKSKCEELSSLHGQLKEARAENSQLTERIRSIE 418
Cdd:COG4717 206 QRLAELEEELEEAQEELEELEEELEQLENELEAAALE---------ERLKEARLLLLIAAALLALLGLGGSLLSLILTIA 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 419 AL------LEAGQAQDTQASHAEANQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERAC 492
Cdd:COG4717 277 GVlflvlgLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 493 EEKLRSLTQAKEESEKQ--LHLAEAQTKETLLALLpglsiSAHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIV------ 564
Cdd:COG4717 357 EELEEELQLEELEQEIAalLAEAGVEDEEELRAAL-----EQAEEYQELKEELEELEEQLEELLGELEELLEALdeeele 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 565 LKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKS-----VEEEERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLkg 639
Cdd:COG4717 432 EELEELEEELEELEEELEELREELAELEAELEQLEEDgelaeLLQELEELKAELRELAEEWAALKLALELLEEAREEY-- 509
|
490
....*....|....*
gi 568918952 640 ELESSDQVREHTSHL 654
Cdd:COG4717 510 REERLPPVLERASEY 524
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
277-509 |
3.18e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 3.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 277 QNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKEseeaLQKRLEEVTRELCRAQTSHA 356
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA----LEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 357 NLRADAEKAQEQ-QQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQAShAE 435
Cdd:COG4942 94 ELRAELEAQKEElAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE-AE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568918952 436 ANQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLReknwKAMEALALAERACEEKLRSLTQAKEESEKQ 509
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELA----AELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
280-849 |
3.42e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 3.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 280 ELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEE--ALQKRLEEVTRELCRAQTSHAN 357
Cdd:PRK03918 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEyiKLSEFYEEYLDELREIEKRLSR 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 358 LRADAEKAQEQQQRVAELHSKLQssevEVKSKCEELSSLHGQLKEaraeNSQLTERIRSIEALLEAGQAQDTQASHAEAN 437
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLE----ELKKKLKELEKRLEELEE----RHELYEEAKAKKEELERLKKRLTGLTPEKLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 438 QQqtrLKELESQVSCLEKETSELKEAMEQQKGKNNDLReknwKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQt 517
Cdd:PRK03918 391 KE---LEELEKAKEEIEEEISKITARIGELKKEIKELK----KAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELK- 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 518 ketllallpglsisahqNYAEWLQEFKEKGSELLKKPPTLEpsmdivlKLREAEETQNSLQAECDQYRTILAETEGM-LK 596
Cdd:PRK03918 463 -----------------RIEKELKEIEEKERKLRKELRELE-------KVLKKESELIKLKELAEQLKELEEKLKKYnLE 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 597 DLQKSVEEEERVwkakvgaaEEELHKSRVTVKHLEDIVEKLKgELESSdqvrehtshlEAELEKHMAAASAECQNYAKEv 676
Cdd:PRK03918 519 ELEKKAEEYEKL--------KEKLIKLKGEIKSLKKELEKLE-ELKKK----------LAELEKKLDELEEELAELLKE- 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 677 agLRQLLLESQSQLDEAKSEAQKQSDELAlvrqQLSDMRSHVEDgdvagspavppAEQDPMKLKTQLERTEATLEAEQTR 756
Cdd:PRK03918 579 --LEELGFESVEELEERLKELEPFYNEYL----ELKDAEKELER-----------EEKELKKLEEELDKAFEELAETEKR 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 757 RQKLTAEFEEAQRTACriQEELEKLRAAgplessgKEEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDT 836
Cdd:PRK03918 642 LEELRKELEELEKKYS--EEEYEELREE-------YLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKE 712
|
570
....*....|...
gi 568918952 837 VKKLQEQLGKAED 849
Cdd:PRK03918 713 LEKLEKALERVEE 725
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
223-467 |
3.79e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 3.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 223 YRDHVKEVQQLQGKIRTLQEQLE--NGPNTQLARLQQENSILRDALNQATSQVESKQntELAKLRQELSKVN-----KEL 295
Cdd:COG4913 213 VREYMLEEPDTFEAADALVEHFDdlERAHEALEDAREQIELLEPIRELAERYAAARE--RLAELEYLRAALRlwfaqRRL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 296 VEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQ----KRLEEVTRELCRAQTSHANLRadaEKAQEQQQR 371
Cdd:COG4913 291 ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRgnggDRLEQLEREIERLERELEERE---RRRARLEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 372 VAELHSKLQSSEvevkskcEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQashaEANQQQTRLKELESQVS 451
Cdd:COG4913 368 LAALGLPLPASA-------EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRR----ELRELEAEIASLERRKS 436
|
250
....*....|....*.
gi 568918952 452 CLEKETSELKEAMEQQ 467
Cdd:COG4913 437 NIPARLLALRDALAEA 452
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
207-377 |
9.03e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 9.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 207 AREQEIAAVQARMQASYRDHVKEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQ 286
Cdd:COG4913 267 ARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARL-EAELERLEARLDALREELDELEAQIRGNGGDRLEQLER 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 287 ELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQ 366
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE 425
|
170
....*....|.
gi 568918952 367 EQQQRVAELHS 377
Cdd:COG4913 426 AEIASLERRKS 436
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
155-389 |
1.38e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 155 LKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASekakaaageakVKKQLVAREQEIAAVQARMQASyrdhVKEVQQLQ 234
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAA-----------LARRIRALEQELAALEAELAEL----EKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 235 GKIRTLQEQLENgpntQLARLQQENSILRDALnqatsQVESKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEA 314
Cdd:COG4942 97 AELEAQKEELAE----LLRALYRLGRQPPLAL-----LLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568918952 315 KAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSK 389
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
156-422 |
2.06e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 2.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 156 KRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAsekakaaageakvkkQLVAREQEIAAVQArmqasYRDHVKEVQQLQG 235
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELD---------------ALQERREALQRLAE-----YSWDEIDVASAER 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 236 KIRTLQEQLEN--GPNTQLARLQQENSILRDALNQATSQVESKQ------NTELAKLRQELSKVNKELVEKSEASRQEEQ 307
Cdd:COG4913 669 EIAELEAELERldASSDDLAALEEQLEELEAELEELEEELDELKgeigrlEKELEQAEEELDELQDRLEAAEDLARLELR 748
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 308 QRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSH--------ANLRADAEKAQEqqqrVAELHSKL 379
Cdd:COG4913 749 ALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFnrewpaetADLDADLESLPE----YLALLDRL 824
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 568918952 380 QSSEV--------EVKSKC--EELSSLHGQLKEARAEnsqLTERIRSIEALLE 422
Cdd:COG4913 825 EEDGLpeyeerfkELLNENsiEFVADLLSKLRRAIRE---IKERIDPLNDSLK 874
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
152-844 |
2.31e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 2.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 152 VAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQ 231
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 232 QLQGKIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKA 311
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEK 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 312 LEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRAD-----AEKAQEQQQRVAELHSKLQSSEVEV 386
Cdd:pfam02463 324 KKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEellakKKLESERLSSAAKLKEEELELKSEE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 387 KSKCEELSSL-HGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESqvscLEKETSELKEAME 465
Cdd:pfam02463 404 EKEAQLLLELaRQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE----LKKSEDLLKETQL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 466 QQKGKNNDLREKNWKAMEALAlAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLS---------------- 529
Cdd:pfam02463 480 VKLQEQLELLLSRQKLEERSQ-KESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKvaistavivevsatad 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 530 --ISAHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIVLKLREAEETQNSLQAECDQYRTILA---ETEGMLKDLQKSVEE 604
Cdd:pfam02463 559 evEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKrakVVEGILKDTELTKLK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 605 EERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLL 684
Cdd:pfam02463 639 ESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 685 ESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAGSPAVPPAEQDPMKLKTQLERTEAT----LEAEQTRRQKL 760
Cdd:pfam02463 719 AEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTeklkVEEEKEEKLKA 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 761 TAEFEEAQRTACRIQEELEKLRAAGPLESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKL 840
Cdd:pfam02463 799 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
....
gi 568918952 841 QEQL 844
Cdd:pfam02463 879 LEEQ 882
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
213-499 |
2.72e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.45 E-value: 2.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 213 AAVQARMQAsyrdhVKEVQQLQGKIRTLQEQLENGPNT--QLARLQQENSILRDALNQATSQVESKQnTELAKL------ 284
Cdd:PRK11281 39 ADVQAQLDA-----LNKQKLLEAEDKLVQQDLEQTLALldKIDRQKEETEQLKQQLAQAPAKLRQAQ-AELEALkddnde 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 285 --RQELSKVNKELVEKSEASRQEEQQRkaLEAKAATFEKQVLQLQASHKESEEAL---QKRLEEVTRELCRAQTSHANLR 359
Cdd:PRK11281 113 etRETLSTLSLRQLESRLAQTLDQLQN--AQNDLAEYNSQLVSLQTQPERAQAALyanSQRLQQIRNLLKGGKVGGKALR 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 360 ADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLhgQLKEARAENSQLTERIRSIEAL-----LEAGQAQDTQASHA 434
Cdd:PRK11281 191 PSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQK--QRDYLTARIQRLEHQLQLLQEAinskrLTLSEKTVQEAQSQ 268
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568918952 435 EANQQQTR----LKELES--QVS-CLEKETSELKEAMEQqkgknnDLREKNWkaMEALALAERACEEKLRSL 499
Cdd:PRK11281 269 DEAARIQAnplvAQELEInlQLSqRLLKATEKLNTLTQQ------NLRVKNW--LDRLTQSERNIKEQISVL 332
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
365-771 |
2.92e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 2.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 365 AQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAqdtqashaEANQQQTRLK 444
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ--------EEEKLKERLE 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 445 ELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALA-LAERACEEKLRSLTQAKEESEKQLHLAEAQTKEtlla 523
Cdd:TIGR02169 741 ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNdLEARLSHSRIPEIQAELSKLEEEVSRIEARLRE---- 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 524 llpglsISAHQNYAEWLQEFKEKGSEllkkpptlepsmDIVLKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVE 603
Cdd:TIGR02169 817 ------IEQKLNRLTLEKEYLEKEIQ------------ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR 878
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 604 EEErvwkAKVGAAEEELHKSRVTVKHLEDIVEKLKGELEssdQVREHTSHLEAELEkhmaAASAECQNYAKEVaglRQLL 683
Cdd:TIGR02169 879 DLE----SRLGDLKKERDELEAQLRELERKIEELEAQIE---KKRKRLSELKAKLE----ALEEELSEIEDPK---GEDE 944
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 684 LESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAgspavppaeqdpmKLKTQLERTEATLEAEQTRRQKLTAE 763
Cdd:TIGR02169 945 EIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVL-------------KRLDELKEKRAKLEEERKAILERIEE 1011
|
....*...
gi 568918952 764 FEEAQRTA 771
Cdd:TIGR02169 1012 YEKKKREV 1019
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
317-834 |
3.14e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 3.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 317 ATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQS--SEVEVKSKCEELS 394
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEElrEELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 395 SLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRlkelESQVSCLEKETSELKEAMEQQKGKNNDL 474
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQ----EELEELLEQLSLATEEELQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 475 REKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSISAHQnyaewlqefkekGSELLKKP 554
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGL------------GGSLLSLI 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 555 PTLEPSMDIVLKLREAEETQNSLQAECDQYRTILAETEGMLKDLQksvEEEERVWKAKVGAAEEElhkSRVTVKHLEDIV 634
Cdd:COG4717 273 LTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELE---EEELEELLAALGLPPDL---SPEELLELLDRI 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 635 EKLKGELESSDQVREH--TSHLEAELEKHMAAASAEcqnyakEVAGLRQLLlesqsqldEAKSEAQKQSDELALVRQQLS 712
Cdd:COG4717 347 EELQELLREAEELEEElqLEELEQEIAALLAEAGVE------DEEELRAAL--------EQAEEYQELKEELEELEEQLE 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 713 DmrshvedgdVAGSPAVPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEaqrtacrIQEELEKLRAAGPLessgk 792
Cdd:COG4717 413 E---------LLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAE-------LEAELEQLEEDGEL----- 471
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 568918952 793 EEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEK 834
Cdd:COG4717 472 AELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
281-467 |
4.35e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 4.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 281 LAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKqvLQLQASHKESEEALQKRLEEVTRELcraqtshANLRA 360
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQR--LAEYSWDEIDVASAEREIAELEAEL-------ERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 361 DAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQ 440
Cdd:COG4913 683 SSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762
|
170 180 190
....*....|....*....|....*....|
gi 568918952 441 TR---LKELESQVSCLEKETSELKEAMEQQ 467
Cdd:COG4913 763 VErelRENLEERIDALRARLNRAEEELERA 792
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
204-419 |
5.54e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.02 E-value: 5.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 204 QLVAREQEIAAVQARMQASYRDHvkEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESK------- 276
Cdd:COG3206 183 QLPELRKELEEAEAALEEFRQKN--GLVDLSEEAKLLLQQLSEL-ESQLAEARAELAEAEARLAALRAQLGSGpdalpel 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 277 -QNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVlqlqashkesEEALQKRLEEVTRELCRAQTSH 355
Cdd:COG3206 260 lQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQL----------QQEAQRILASLEAELEALQARE 329
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568918952 356 ANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEA 419
Cdd:COG3206 330 ASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNVRVIDP 393
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
232-659 |
1.44e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.88 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 232 QLQGKIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNT---------ELAKLRQELSKVNKELVEKSEAS 302
Cdd:PRK02224 188 SLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETrdeadevleEHEERREELETLEAEIEDLRETI 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 303 RQEEQQRKALEAKAATFEKQVLQLQASHKES-----------------EEALQKRLEEVTREL--CRAQTSHAN-----L 358
Cdd:PRK02224 268 AETEREREELAEEVRDLRERLEELEEERDDLlaeaglddadaeavearREELEDRDEELRDRLeeCRVAAQAHNeeaesL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 359 RADA----EKAQEQQQRVAELHSKLQSSEVEVKSK-----------------------------------CEELSSLHGQ 399
Cdd:PRK02224 348 REDAddleERAEELREEAAELESELEEAREAVEDRreeieeleeeieelrerfgdapvdlgnaedfleelREERDELRER 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 400 LKEARAENSQLTERIRSIEALLEAGQ----AQDTQAS-HAEANQQ--------QTRLKELESQVSCLEKETSELKEAMEQ 466
Cdd:PRK02224 428 EAELEATLRTARERVEEAEALLEAGKcpecGQPVEGSpHVETIEEdrerveelEAELEDLEEEVEEVEERLERAEDLVEA 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 467 QKGKnNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKqlHLAEAQTKETLLAllpglsiSAHQNYAEWLQEFKEK 546
Cdd:PRK02224 508 EDRI-ERLEERREDLEELIAERRETIEEKRERAEELRERAAE--LEAEAEEKREAAA-------EAEEEAEEAREEVAEL 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 547 GSELLKKPPTLEPSMDIVLKLREAEETQNSLQAECDQyRTILAETEGMLKDLQKSVEEEERVWKAKV-GAAEEELHKSRV 625
Cdd:PRK02224 578 NSKLAELKERIESLERIRTLLAAIADAEDEIERLREK-REALAELNDERRERLAEKRERKRELEAEFdEARIEEAREDKE 656
|
490 500 510
....*....|....*....|....*....|....*
gi 568918952 626 T-VKHLEDIVEKLKGELESSDQVREHTSHLEAELE 659
Cdd:PRK02224 657 RaEEYLEQVEEKLDELREERDDLQAEIGAVENELE 691
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
331-848 |
1.46e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 331 KESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQL 410
Cdd:PRK03918 199 EKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 411 TERIRSIEAL---------LEAGQAQDTQASH----------AEANQQQTRLKELESqvscLEKETSELKEAMEQQKGKN 471
Cdd:PRK03918 279 EEKVKELKELkekaeeyikLSEFYEEYLDELReiekrlsrleEEINGIEERIKELEE----KEERLEELKKKLKELEKRL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 472 NDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALlpgLSISAHQNYAEWLQEFKEKGSELL 551
Cdd:PRK03918 355 EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEI---SKITARIGELKKEIKELKKAIEEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 552 KKPPTLEPSMDIVLKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEErvwkaKVGAAEEELHKSRVTVKHLE 631
Cdd:PRK03918 432 KKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELE-----KVLKKESELIKLKELAEQLK 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 632 DIVEKLKG-ELESSDQVREHTSHLEAELEKhmaaASAECQNYAKEVAGLRQLllesQSQLDEAKSEAQKQSDELALVRQQ 710
Cdd:PRK03918 507 ELEEKLKKyNLEELEKKAEEYEKLKEKLIK----LKGEIKSLKKELEKLEEL----KKKLAELEKKLDELEEELAELLKE 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 711 LSDMRSHVEDGDVAGSPAVPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAGPLESS 790
Cdd:PRK03918 579 LEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE 658
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 791 GK-EEITQLKERLEKE-KRLTSDLGRAAIKLQELLKTTqEQLTKEKDTVKKLQEQLGKAE 848
Cdd:PRK03918 659 EEyEELREEYLELSRElAGLRAELEELEKRREEIKKTL-EKLKEELEEREKAKKELEKLE 717
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
218-524 |
1.48e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.92 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 218 RMQASYRDHV--KEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKEL 295
Cdd:COG5022 798 KLQPLLSLLGsrKEYRSYLACIIKLQKTIKRE-KKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQR 876
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 296 VEKSEASRQEEQQ----RKALEAKAATFEKQVLQLQASHKESE-EALQKRLEEVTRELCraqtshANLRADAEKAQEQQQ 370
Cdd:COG5022 877 VELAERQLQELKIdvksISSLKLVNLELESEIIELKKSLSSDLiENLEFKTELIARLKK------LLNNIDLEEGPSIEY 950
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 371 RVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQ--DTQASHAEANQQQTRLKELES 448
Cdd:COG5022 951 VKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQygALQESTKQLKELPVEVAELQS 1030
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 449 QVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAER----ACEEKLRSLTQAKEESEKQLHLAEAQTKETLLAL 524
Cdd:COG5022 1031 ASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRrensLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVK 1110
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
287-848 |
1.81e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 287 ELSKVNKELVEKSEASRQEEQQRKALEAKAatfekqVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQ 366
Cdd:pfam15921 99 ELHEKQKFYLRQSVIDLQTKLQEMQMERDA------MADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQI 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 367 EQQQRVA--------ELHSKLQSSEVEVKSKCEE---LSSLHGQ---------LKEARAENSQLTERIRSIEALLEAGQA 426
Cdd:pfam15921 173 EQLRKMMlshegvlqEIRSILVDFEEASGKKIYEhdsMSTMHFRslgsaiskiLRELDTEISYLKGRIFPVEDQLEALKS 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 427 QDTQASHAEANQQQTRLKELesqVSCLEKETSELKEAMEQQKGKNNDL-----------REKNWKAMEALALAERACEEK 495
Cdd:pfam15921 253 ESQNKIELLLQQHQDRIEQL---ISEHEVEITGLTEKASSARSQANSIqsqleiiqeqaRNQNSMYMRQLSDLESTVSQL 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 496 LRSLTQAK-------EESEKQLHLAEAQTKE-------------TLLALLPGLSISAHQNYAEWLQEfKEKGSELLKKPP 555
Cdd:pfam15921 330 RSELREAKrmyedkiEELEKQLVLANSELTEarterdqfsqesgNLDDQLQKLLADLHKREKELSLE-KEQNKRLWDRDT 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 556 TLEPSMDIV--------LKLREAEETQNSLQAECD-QYRTILAETEGMLKDLQK--SVEEEERVWKAKVGAAEEELHKSR 624
Cdd:pfam15921 409 GNSITIDHLrrelddrnMEVQRLEALLKAMKSECQgQMERQMAAIQGKNESLEKvsSLTAQLESTKEMLRKVVEELTAKK 488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 625 VTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLllesQSQLDEAKSEAQKQSDEL 704
Cdd:pfam15921 489 MTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNV----QTECEALKLQMAEKDKVI 564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 705 ALVRQQLSDMRSHV-EDGDVAGSPAVPPAEqdpmkLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRA 783
Cdd:pfam15921 565 EILRQQIENMTQLVgQHGRTAGAMQVEKAQ-----LEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVN 639
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568918952 784 AGPLESSGKEEITQLKERLEKE-KRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQLGKAE 848
Cdd:pfam15921 640 AGSERLRAVKDIKQERDQLLNEvKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQ 705
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
282-517 |
1.97e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 48.37 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 282 AKLRQELSKVNKelvekseaSRQEEQQRKALEAkaaTFEKQVLQLQ--ASHKESEEALQKRLEEVTRELCRAQTSHANLR 359
Cdd:PRK11281 39 ADVQAQLDALNK--------QKLLEAEDKLVQQ---DLEQTLALLDkiDRQKEETEQLKQQLAQAPAKLRQAQAELEALK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 360 ADAEKAQEQ----------QQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDT 429
Cdd:PRK11281 108 DDNDEETREtlstlslrqlESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 430 QASHAEANQQQTRLKELESQVSCLEKET---SELKEAMEQQKgknNDLREKNWKAMEALALAERACEEKLRSLTQAK-EE 505
Cdd:PRK11281 188 ALRPSQRVLLQAEQALLNAQNDLQRKSLegnTQLQDLLQKQR---DYLTARIQRLEHQLQLLQEAINSKRLTLSEKTvQE 264
|
250
....*....|..
gi 568918952 506 SEKQLHLAEAQT 517
Cdd:PRK11281 265 AQSQDEAARIQA 276
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
158-314 |
2.06e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 2.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 158 QLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQ-LVAREQEIAAVQARMQASYRDHVKEVQQLQGK 236
Cdd:COG3206 220 QLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQqLRAQLAELEAELAELSARYTPNHPDVIALRAQ 299
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568918952 237 IRTLQEQLENGPNTQLARLQQENSILRDALNQATSQveskqnteLAKLRQELSKVNKELVEKSEASRQEEQQRKALEA 314
Cdd:COG3206 300 IAALRAQLQQEAQRILASLEAELEALQAREASLQAQ--------LAQLEARLAELPELEAELRRLEREVEVARELYES 369
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
280-519 |
2.19e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.41 E-value: 2.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 280 ELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKqvLQLQASHKEsEEALQKRLEEVTRELCRAQTSHANLR 359
Cdd:COG3096 837 ELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNK--LLPQANLLA-DETLADRLEELREELDAAQEAQAFIQ 913
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 360 ADAEKAQ-------------EQQQRVAELHSKLQSSEVEVKSKCEELSSL------------HGQLKEARAENSQLTERI 414
Cdd:COG3096 914 QHGKALAqleplvavlqsdpEQFEQLQADYLQAKEQQRRLKQQIFALSEVvqrrphfsyedaVGLLGENSDLNEKLRARL 993
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 415 RSIE-ALLEAG-QAQDTQASHAEANQQQTRLKelesqvSCLEKETSELKEAMEQQKgknnDLREKNWKAMEALALAERA- 491
Cdd:COG3096 994 EQAEeARREAReQLRQAQAQYSQYNQVLASLK------SSRDAKQQTLQELEQELE----ELGVQADAEAEERARIRRDe 1063
|
250 260
....*....|....*....|....*...
gi 568918952 492 CEEKLRSLTQAKEESEKQLHLAEAQTKE 519
Cdd:COG3096 1064 LHEELSQNRSRRSQLEKQLTRCEAEMDS 1091
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
228-519 |
2.23e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.09 E-value: 2.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 228 KEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQNtELAKLRQELSKVNKELVEKSEASRQEEQ 307
Cdd:TIGR04523 314 SELKNQEKKLEEIQNQISQN-NKIISQLNEQISQLKKELTNSESENSEKQR-ELEEKQNEIEKLKKENQSYKQEIKNLES 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 308 QRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTR-------------ELCRAQTSHANLRADAEKAQEQQQR--- 371
Cdd:TIGR04523 392 QINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERlketiiknnseikDLTNQDSVKELIIKNLDNTRESLETqlk 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 372 -----VAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEalleagqaQDTQASHAEANQQQTRLKEL 446
Cdd:TIGR04523 472 vlsrsINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLK--------EKIEKLESEKKEKESKISDL 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 447 ESQV---------SCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAE---RACEEKLRSLTQAKEESEKQLHLAE 514
Cdd:TIGR04523 544 EDELnkddfelkkENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEkekKDLIKEIEEKEKKISSLEKELEKAK 623
|
....*
gi 568918952 515 AQTKE 519
Cdd:TIGR04523 624 KENEK 628
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
186-846 |
3.74e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 3.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 186 EMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQQLQGKIRTLQEQLENGPN--TQLARLQQENSILR 263
Cdd:TIGR00618 180 QLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAylTQKREAQEEQLKKQ 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 264 DALNQATSQVESKQNTE--LAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKRL 341
Cdd:TIGR00618 260 QLLKQLRARIEELRAQEavLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSS 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 342 EEVTRELCRAQTSHANLRADaekAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALL 421
Cdd:TIGR00618 340 IEEQRRLLQTLHSQEIHIRD---AHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRT 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 422 EAGQAQDTQASHAEAnQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEKL----R 497
Cdd:TIGR00618 417 SAFRDLQGQLAHAKK-QQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAvvlaR 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 498 SLTQAKEESEKQLHLAEAQTKETLLALLPGLS------ISAHQNYAEWLQEFKEKGSELLKKPPTLEPSMdivlklREAE 571
Cdd:TIGR00618 496 LLELQEEPCPLCGSCIHPNPARQDIDNPGPLTrrmqrgEQTYAQLETSEEDVYHQLTSERKQRASLKEQM------QEIQ 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 572 ETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVWKAKVGAAEEELHKSRVTVkHLEDIVEKLKGELESSDQVREHT 651
Cdd:TIGR00618 570 QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ-DLQDVRLHLQQCSQELALKLTAL 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 652 SHLEAELEKHMAAASAECQNYAKEvaglrQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRShVEDGDVAGSPAVPP 731
Cdd:TIGR00618 649 HALQLTLTQERVREHALSIRVLPK-----ELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRE-LETHIEEYDREFNE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 732 AEQDPMKLKTQLERTEATL-----EAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAGPLESSGKEEITQLKERLEKEK 806
Cdd:TIGR00618 723 IENASSSLGSDLAAREDALnqslkELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLK 802
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 568918952 807 RLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQLGK 846
Cdd:TIGR00618 803 TLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSA 842
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
327-807 |
4.43e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 4.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 327 QASHKESEEALQKRLEEVTRELCRAQtshanlradaekaqeqqqrvaelhsklqssevevkskcEELSSLHGQLKEARAE 406
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLQ--------------------------------------SELRRIENRLDELSQE 710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 407 NSQLTERIRSIEALLEAGQaqdtqashAEANQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALA 486
Cdd:TIGR02169 711 LSDASRKIGEIEKEIEQLE--------QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN 782
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 487 -LAERACEEKLRSLTQAKEESEKQLHLAEAQTKEtllallpglsISAHQNYAEWLQEFKEKGSEllkkpptlepsmDIVL 565
Cdd:TIGR02169 783 dLEARLSHSRIPEIQAELSKLEEEVSRIEARLRE----------IEQKLNRLTLEKEYLEKEIQ------------ELQE 840
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 566 KLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEeervwkakvgaaeeelhksrvtvkhLEDIVEKLKGELEssd 645
Cdd:TIGR02169 841 QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD-------------------------LESRLGDLKKERD--- 892
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 646 qvrehtshleaELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAqkqsdelalvrqqlsdmrSHVEDGDVAG 725
Cdd:TIGR02169 893 -----------ELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL------------------SEIEDPKGED 943
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 726 SPaVPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAgplessgKEEITQLKERLEKE 805
Cdd:TIGR02169 944 EE-IPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEE-------RKAILERIEEYEKK 1015
|
..
gi 568918952 806 KR 807
Cdd:TIGR02169 1016 KR 1017
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
152-523 |
4.89e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 47.12 E-value: 4.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 152 VAILKRQLEEKEKLLATEQEdaavaksKLRELNkemaSEKAKAAAGEAKVKKQLVAREQEIAAVQAR---MQASYRDHVK 228
Cdd:pfam10174 347 VDALRLRLEEKESFLNKKTK-------QLQDLT----EEKSTLAGEIRDLKDMLDVKERKINVLQKKienLQEQLRDKDK 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 229 EVQQLQGKIRTLQEQLENgPNTQLARLQQ---ENSILRDALNQATSQVESKQNTELAKLRQElskvNKELVEKSEASRQE 305
Cdd:pfam10174 416 QLAGLKERVKSLQTDSSN-TDTALTTLEEalsEKERIIERLKEQREREDRERLEELESLKKE----NKDLKEKVSALQPE 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 306 EQQRKA----LEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHanlradaeKAQEQQQRVAELHSKLQS 381
Cdd:pfam10174 491 LTEKESslidLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAH--------NAEEAVRTNPEINDRIRL 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 382 SEVEVKSKCEE-------LSSLHGQLKEARAENSQLTERIRSIEAL-LEAGQAQDTQASHAEANQQQTRLKELESQVSCL 453
Cdd:pfam10174 563 LEQEVARYKEEsgkaqaeVERLLGILREVENEKNDKDKKIAELESLtLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEAR 642
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568918952 454 EKETSELKEAMEQQKGKNNDLREKNWKAMEA----LALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLA 523
Cdd:pfam10174 643 RREDNLADNSQQLQLEELMGALEKTRQELDAtkarLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLA 716
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
453-814 |
7.12e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 7.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 453 LEKETSELKEAMEQQKGKNNDLREKNwKAMEALAlAERACEEKLRSLTQAKEESEKQLHLAEAQTKETllallpglSISA 532
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKR-QQLERLR-REREKAERYQALLKEKREYEGYELLKEKEALER--------QKEA 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 533 HQNYAEWLQEFKEKGSELLKKppTLEPSMDIVLKLREAEETQNSL-QAECDQYRTILAETEGMLKDLQKSVEEEERvwka 611
Cdd:TIGR02169 242 IERQLASLEEELEKLTEEISE--LEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKER---- 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 612 KVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLD 691
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 692 EAKSE-------AQKQSDELALVRQQLSDMRSHVED--GDVAGSPAVPPAEQDPMKLKTQ-LERTEATLEAEQTRRQKLT 761
Cdd:TIGR02169 396 KLKREinelkreLDRLQEELQRLSEELADLNAAIAGieAKINELEEEKEDKALEIKKQEWkLEQLAADLSKYEQELYDLK 475
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 568918952 762 AEFEEAQRTACRIQEELEKL----RAAGPLESSGKEEITQLKERLEKEKRLTSDLGR 814
Cdd:TIGR02169 476 EEYDRVEKELSKLQRELAEAeaqaRASEERVRGGRAVEEVLKASIQGVHGTVAQLGS 532
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
152-711 |
7.89e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 7.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 152 VAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQ 231
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQH 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 232 QLQGKIRTLQEQLE-----------------NGPNTQLARLQQENSILRDALNQATSQVESKQNTEL-----AKLRQELS 289
Cdd:TIGR00618 376 TLTQHIHTLQQQKTtltqklqslckeldilqREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELcaaaiTCTAQCEK 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 290 KVNKELVEKSEASRQEEQQRKALEAKAATfEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQ 369
Cdd:TIGR00618 456 LEKIHLQESAQSLKEREQQLQTKEQIHLQ-ETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGE 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 370 QRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASH---AEANQQQTRLKEL 446
Cdd:TIGR00618 535 QTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDlteKLSEAEDMLACEQ 614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 447 ESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLP 526
Cdd:TIGR00618 615 HALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTY 694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 527 GLSISAHQNYAEWLQEFKEKGSEllkkpptlepsmdivlklREAEETQNSLQAEcdqyRTILAETEGMLKDLQKSVEEEE 606
Cdd:TIGR00618 695 WKEMLAQCQTLLRELETHIEEYD------------------REFNEIENASSSL----GSDLAAREDALNQSLKELMHQA 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 607 RvWKAKVGAAEEELHKSRVTVK-HLEDIVEKLKGELESSDQVREHTSHLEAELEkhmaaasAECQNYAKEVAGLRQLLLE 685
Cdd:TIGR00618 753 R-TVLKARTEAHFNNNEEVTAAlQTGAELSHLAAEIQFFNRLREEDTHLLKTLE-------AEIGQEIPSDEDILNLQCE 824
|
570 580
....*....|....*....|....*..
gi 568918952 686 SQSQ-LDEAKSEAQKQSDELALVRQQL 711
Cdd:TIGR00618 825 TLVQeEEQFLSRLEEKSATLGEITHQL 851
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
155-659 |
1.17e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 155 LKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQE----IAAVQARMQASYRDHVKEV 230
Cdd:pfam12128 331 HGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQnnrdIAGIKDKLAKIREARDRQL 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 231 QQLQGKIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRK 310
Cdd:pfam12128 411 AVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERL 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 311 ALEAKAA--TFEKQVLQLQASHKESEEaLQKRLEEVTRELC-RAQTSHANLRADAEKAQEQQQRV---AELHSKLQSSEV 384
Cdd:pfam12128 491 QSELRQArkRRDQASEALRQASRRLEE-RQSALDELELQLFpQAGTLLHFLRKEAPDWEQSIGKVispELLHRTDLDPEV 569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 385 EVKSKCEELS--SLHGQLKEARAENS-QLTERIRSIEALLEAGqAQDTQASHAEANQQQTRL-KELESQVSCLEKETSEL 460
Cdd:pfam12128 570 WDGSVGGELNlyGVKLDLKRIDVPEWaASEEELRERLDKAEEA-LQSAREKQAAAEEQLVQAnGELEKASREETFARTAL 648
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 461 KEAMEQQKGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETL------------------- 521
Cdd:pfam12128 649 KNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKreartekqaywqvvegald 728
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 522 --LALLPGLSISAHQNYAEWLQEFKEKGSELLKKpptLEPSMDIVLKLREAEET----------------------QNSL 577
Cdd:pfam12128 729 aqLALLKAAIAARRSGAKAELKALETWYKRDLAS---LGVDPDVIAKLKREIRTlerkieriavrrqevlryfdwyQETW 805
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 578 QAECDQYRTILAETEGMLKDLQKSVEEEERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAE 657
Cdd:pfam12128 806 LQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQ 885
|
..
gi 568918952 658 LE 659
Cdd:pfam12128 886 GS 887
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
321-849 |
1.19e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 321 KQVLQLqashkESEEALQKRLEEVTRELCRaqtSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQL 400
Cdd:PRK03918 152 RQILGL-----DDYENAYKNLGEVIKEIKR---RIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 401 KEARAENSQLTERIRSIEALLEAGQAQDTQASHAEAnqqqtRLKELESQVSCLEKETSELKEameqqkgKNNDLREKNWK 480
Cdd:PRK03918 224 EKLEKEVKELEELKEEIEELEKELESLEGSKRKLEE-----KIRELEERIEELKKEIEELEE-------KVKELKELKEK 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 481 AMEALALAE--RACEEKLRSLTQAKEESEKQLHLAEAQTKETllallpglsisahQNYAEWLQEFKEKGSELLKKPPTLE 558
Cdd:PRK03918 292 AEEYIKLSEfyEEYLDELREIEKRLSRLEEEINGIEERIKEL-------------EEKEERLEELKKKLKELEKRLEELE 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 559 PSMDIVLKLREAEETQNSLQAECDQYRtiLAETEGMLKDLQKS---VEEEERVWKAKVGAAEEElhksrvtVKHLEDIVE 635
Cdd:PRK03918 359 ERHELYEEAKAKKEELERLKKRLTGLT--PEKLEKELEELEKAkeeIEEEISKITARIGELKKE-------IKELKKAIE 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 636 KLKG-ELESSDQVREHTSHLEAELekhMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSdELALVRQQLSDM 714
Cdd:PRK03918 430 ELKKaKGKCPVCGRELTEEHRKEL---LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKES-ELIKLKELAEQL 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 715 RSHVEDGDVAGSPAVPPAEQDPMKLKTQLERTEA---TLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRaaGPLESSG 791
Cdd:PRK03918 506 KELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGeikSLKKELEKLEELKKKLAELEKKLDELEEELAELL--KELEELG 583
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 568918952 792 KEEITQLKERLEKEKRLTSDLGRaaiklqelLKTTQEQLTKEKDTVKKLQEQLGKAED 849
Cdd:PRK03918 584 FESVEELEERLKELEPFYNEYLE--------LKDAEKELEREEKELKKLEEELDKAFE 633
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
142-466 |
1.37e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 142 WHKATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQA 221
Cdd:COG4717 134 LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEE 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 222 SYRDHVKEVQQLQGKIRTLQEQLENGPNTQlaRLQQENSILRDA-------LNQATSQVESKQNTELAKLRQELSKVNKE 294
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEE--RLKEARLLLLIAaallallGLGGSLLSLILTIAGVLFLVLGLLALLFL 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 295 LVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKR----LEEVTRELCRAQTSHANLRADAEKAQEQQQ 370
Cdd:COG4717 292 LLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEelleLLDRIEELQELLREAEELEEELQLEELEQE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 371 RVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGqaqDTQASHAEANQQQTRLKELESQV 450
Cdd:COG4717 372 IAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEAL---DEEELEEELEELEEELEELEEEL 448
|
330
....*....|....*.
gi 568918952 451 SCLEKETSELKEAMEQ 466
Cdd:COG4717 449 EELREELAELEAELEQ 464
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
309-852 |
1.37e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 309 RKALEAKAATFEKQVLQLQASHKESEEALQKR--LEEvtrelcraqtshanLRADAEKAQEQQQRVAELHSKLQSSEVEV 386
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQIelLEP--------------IRELAERYAAARERLAELEYLRAALRLWF 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 387 KSKCEELssLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVSCLEKETSELKEAMEQ 466
Cdd:COG4913 286 AQRRLEL--LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRAR 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 467 QKGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQ------TKETLLALLPGLSiSAHQNYAEWL 540
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAlrdlrrELRELEAEIASLE-RRKSNIPARL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 541 QEFKEKGSELLKKPPTlepSMDIV---LKLREAEET-QNSLQAECDQYRTILAETEGMLKDLQKSVEE---EERVWKAKV 613
Cdd:COG4913 443 LALRDALAEALGLDEA---ELPFVgelIEVRPEEERwRGAIERVLGGFALTLLVPPEHYAAALRWVNRlhlRGRLVYERV 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 614 GAAEEELHKSRVTVKHLediVEKLK-------GELEssDQVREHTSHL----EAELEKHMAAASAECQNYAKEVAG---- 678
Cdd:COG4913 520 RTGLPDPERPRLDPDSL---AGKLDfkphpfrAWLE--AELGRRFDYVcvdsPEELRRHPRAITRAGQVKGNGTRHekdd 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 679 ----LRQLLL--ESQSQLDEAKSEAQKQSDELALVRQQLSdmrshvedgdvagspavppaeqdpmKLKTQLERTEATLEA 752
Cdd:COG4913 595 rrriRSRYVLgfDNRAKLAALEAELAELEEELAEAEERLE-------------------------ALEAELDALQERREA 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 753 EQTRRQKLTAE--FEEAQRTACRIQEELEKLRAAGPlessgkeEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQL 830
Cdd:COG4913 650 LQRLAEYSWDEidVASAEREIAELEAELERLDASSD-------DLAALEEQLEELEAELEELEEELDELKGEIGRLEKEL 722
|
570 580
....*....|....*....|..
gi 568918952 831 TKEKDTVKKLQEQLGKAEDGSS 852
Cdd:COG4913 723 EQAEEELDELQDRLEAAEDLAR 744
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
152-842 |
2.26e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 152 VAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEmASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQ 231
Cdd:pfam02463 347 LEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKL-ESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEK 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 232 QLQGKIRTLQEQLENGPNTQLArLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKA 311
Cdd:pfam02463 426 KEELEILEEEEESIELKQGKLT-EEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESK 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 312 LEAKAATFEKQVLQLQASHKESEEALQKRLEEVTrELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCE 391
Cdd:pfam02463 505 ARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAV-ENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLL 583
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 392 ELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELES------------QVSCLEKETSE 459
Cdd:pfam02463 584 IPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESakakesglrkgvSLEEGLAEKSE 663
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 460 LKEAMEQQKGKNNDLREKNWKA-MEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLpglSISAHQNYAE 538
Cdd:pfam02463 664 VKASLSELTKELLEIQELQEKAeSELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEA---QDKINEELKL 740
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 539 WLQEFKEKGSELLKKpptlEPSMDIVLKLREAEETQNSLQAECDQYRTILAETEGMLKDLqKSVEEEERVWKAKVGAAEE 618
Cdd:pfam02463 741 LKQKIDEEEEEEEKS----RLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKL-KAQEEELRALEEELKEEAE 815
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 619 ELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQ 698
Cdd:pfam02463 816 LLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKE 895
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 699 KQSDELALVRQQLSDMrshvedgdvagspavPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEEL 778
Cdd:pfam02463 896 KEEKKELEEESQKLNL---------------LEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEE 960
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568918952 779 EKLRAAGPLESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQEllKTTQEQLTKEKDTVKKLQE 842
Cdd:pfam02463 961 RNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEE--KKKLIRAIIEETCQRLKEF 1022
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
275-836 |
2.33e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 2.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 275 SKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTR---ELCRA 351
Cdd:TIGR04523 120 NKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKiknKLLKL 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 352 QTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQA 431
Cdd:TIGR04523 200 ELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQN 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 432 ShAEANQQQTRLKELESQVSCLEKE-----TSELKEAMEQQKGKNNDLR---EKNWKAMEALALAERACEEKLRSLTQAK 503
Cdd:TIGR04523 280 N-KKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEIQnqiSQNNKIISQLNEQISQLKKELTNSESEN 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 504 EESEKQLhlaeaQTKETLLALLpglsISAHQNYAEWLQEFKEKGSELLKKpptlepsmdIVLKLREAEETQNSLQAECDQ 583
Cdd:TIGR04523 359 SEKQREL-----EEKQNEIEKL----KKENQSYKQEIKNLESQINDLESK---------IQNQEKLNQQKDEQIKKLQQE 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 584 YRTILAETEGMLKDLQKSVEEEERVwkakvgaaEEELHKSRVTVKHLEDIVEKLKGELES-SDQVREHTSHLEaELEKHM 662
Cdd:TIGR04523 421 KELLEKEIERLKETIIKNNSEIKDL--------TNQDSVKELIIKNLDNTRESLETQLKVlSRSINKIKQNLE-QKQKEL 491
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 663 AAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHV-EDGDVAGSPAVPPAEQDPMKLKT 741
Cdd:TIGR04523 492 KSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELnKDDFELKKENLEKEIDEKNKEIE 571
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 742 QLERTEATLEAEQTRRQKLTAEFEEAQRTacrIQEELEKLraaGPLESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQE 821
Cdd:TIGR04523 572 ELKQTQKSLKKKQEEKQELIDQKEKEKKD---LIKEIEEK---EKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQ 645
|
570
....*....|....*
gi 568918952 822 LLKTTQEQLTKEKDT 836
Cdd:TIGR04523 646 EVKQIKETIKEIRNK 660
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
299-519 |
2.72e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 299 SEASRQEEQQRKALEAKAATFEKQVLQLQAShkesEEALQKRLEEVTRELCRAQtshanlradaEKAQEQQQRVAELHSK 378
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKE----EKALLKQLAALERRIAALA----------RRIRALEQELAALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 379 LQSSEVEVKSKCEELSSLHGQLKEaRAENSQLTERIRSIEALLEAGQAQD-----------TQASHAEANQQQTRLKELE 447
Cdd:COG4942 85 LAELEKEIAELRAELEAQKEELAE-LLRALYRLGRQPPLALLLSPEDFLDavrrlqylkylAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568918952 448 SQVSCLEKETSELKEAMEQQKGKNNDL---REKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKE 519
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALealKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
229-742 |
3.03e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 3.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 229 EVQQLQGKIRTLQEQLENGPNT---QLARLQQENSILRDALNQATSQVESKqnteLAKLRQELSKVNKELVEK------- 298
Cdd:pfam15921 293 QANSIQSQLEIIQEQARNQNSMymrQLSDLESTVSQLRSELREAKRMYEDK----IEELEKQLVLANSELTEArterdqf 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 299 SEASRQEEQQRKALEAKAATFEKQVLQLQASHKE----------SEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQ 368
Cdd:pfam15921 369 SQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwdrdtgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMER 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 369 Q-----------QRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQ-ASHAEA 436
Cdd:pfam15921 449 QmaaiqgkneslEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKlRSRVDL 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 437 NQQQTR-LKELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEKLRSLTQ-AKEESEKQLHLAE 514
Cdd:pfam15921 529 KLQELQhLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQlEKEINDRRLELQE 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 515 AQT-KETLLALLPGLSISAHQNYAEWLQeFKEKGSELLKKPPTLEPSMDIVLKlrEAEETQNSLQAECDQYRTIlaetEG 593
Cdd:pfam15921 609 FKIlKDKKDAKIRELEARVSDLELEKVK-LVNAGSERLRAVKDIKQERDQLLN--EVKTSRNELNSLSEDYEVL----KR 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 594 MLKDLQKSVEEEERVWKAKVGAAEEELHKSRVTVKHLEDI-VEKLKGELESSDQVREHTSHLEAeLEKHMAAASAECQNY 672
Cdd:pfam15921 682 NFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdGHAMKVAMGMQKQITAKRGQIDA-LQSKIQFLEEAMTNA 760
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 673 AKEVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAGSPA----------VPPAEQDPMKLKTQ 742
Cdd:pfam15921 761 NKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKAslqfaecqdiIQRQEQESVRLKLQ 840
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
285-520 |
3.07e-04 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 44.30 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 285 RQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESeealQKRLEEVTRELCRAQTSHANLradaEK 364
Cdd:PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRET----QNTLNQLNKQIDELNASIAKL----EQ 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 365 AQEQQQRV--AEL--------HSKLQ---SSEVEVKSkcEELSSLHGQLKEARAEN----SQLTERIRSIEALLEAGQAQ 427
Cdd:PRK11637 118 QQAAQERLlaAQLdaafrqgeHTGLQlilSGEESQRG--ERILAYFGYLNQARQETiaelKQTREELAAQKAELEEKQSQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 428 DTQASHAEANQQQTrlkeLESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERacEEKLRSLTQAKEESE 507
Cdd:PRK11637 196 QKTLLYEQQAQQQK----LEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAER--EAKARAEREAREAAR 269
|
250
....*....|...
gi 568918952 508 KQLHLAEAQTKET 520
Cdd:PRK11637 270 VRDKQKQAKRKGS 282
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
306-476 |
3.12e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 306 EQQRKALEAKAATFEKQVLQLQASHK-----ESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQ 380
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKNGlvdlsEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 381 SSEVevkskceeLSSLHGQLKEARAENSQLTER-------IRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVSCL 453
Cdd:COG3206 261 QSPV--------IQQLRAQLAELEAELAELSARytpnhpdVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASL 332
|
170 180
....*....|....*....|...
gi 568918952 454 EKETSELKEAMEQQKGKNNDLRE 476
Cdd:COG3206 333 QAQLAQLEARLAELPELEAELRR 355
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
233-519 |
3.50e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.40 E-value: 3.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 233 LQGKIRTLQEQLeNGPNTQLARLQQENSILRDALNQATSQV--ESKQNTELAKLRQELSKVNKELVE---KSEASRQE-E 306
Cdd:pfam01576 129 TEAKIKKLEEDI-LLLEDQNSKLSKERKLLEERISEFTSNLaeEEEKAKSLSKLKNKHEAMISDLEErlkKEEKGRQElE 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 307 QQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQS----- 381
Cdd:pfam01576 208 KAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESeraar 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 382 --SEVEVKSKCEELSSLHGQLKEA-RAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESqvsclekeTS 458
Cdd:pfam01576 288 nkAEKQRRDLGEELEALKTELEDTlDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQA--------LE 359
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568918952 459 ELKEAMEQQKgKNNDLREKNWKAMEAlALAERACEekLRSLTQAKEESEKQLHLAEAQTKE 519
Cdd:pfam01576 360 ELTEQLEQAK-RNKANLEKAKQALES-ENAELQAE--LRTLQQAKQDSEHKRKKLEGQLQE 416
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
155-519 |
3.53e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 3.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 155 LKRQLEEKEKLLATEQEDAAVAKSKLRELnkEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQAsYRDHVKEVQQLQ 234
Cdd:COG4717 93 LQEELEELEEELEELEAELEELREELEKL--EKLLQLLPLYQELEALEAELAELPERLEELEERLEE-LRELEEELEELE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 235 GKIRTLQEQLENGPNT-------QLARLQQENSILRDALNQATSQVESKQNtELAKLRQELSKVNKELVEKSEASR-QEE 306
Cdd:COG4717 170 AELAELQEELEELLEQlslateeELQDLAEELEELQQRLAELEEELEEAQE-ELEELEEELEQLENELEAAALEERlKEA 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 307 QQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQE-------QQQRVAELHSKL 379
Cdd:COG4717 249 RLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQAlpaleelEEEELEELLAAL 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 380 QSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIR------SIEALLEAGQAQDTQA------SHAEANQQQTRLKELE 447
Cdd:COG4717 329 GLPPDLSPEELLELLDRIEELQELLREAEELEEELQleeleqEIAALLAEAGVEDEEElraaleQAEEYQELKEELEELE 408
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568918952 448 SQvscLEKETSELKEAMEQQKGKNNDLR-EKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKE 519
Cdd:COG4717 409 EQ---LEELLGELEELLEALDEEELEEElEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQEL 478
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
579-844 |
3.99e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 3.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 579 AECDQYRTILAETEGMLKDLQKSVE--EEERVWKAKVGAAEEELHKSRVTVkhledivekLKGELESSDQVREHTSHLEA 656
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLErlRREREKAERYQALLKEKREYEGYE---------LLKEKEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 657 ELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQ--------SDELALVRQQLSDMRSHVEDGDvagsPA 728
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigelEAEIASLERSIAEKERELEDAE----ER 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 729 VPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRT----ACRIQEELEKLRAAGPLESSGKEEITQLKERLEK 804
Cdd:TIGR02169 324 LAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEledlRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 568918952 805 EKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQL 844
Cdd:TIGR02169 404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK 443
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
335-607 |
4.59e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 4.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 335 EALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVE-VKSKCEELSSLHGQLKEARAENSQLTER 413
Cdd:COG3096 839 AALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANLLADEtLADRLEELREELDAAQEAQAFIQQHGKA 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 414 IRSIEALLEAGQA--QDTQASHAEANQQQTRLKELESQVSCLEkETSELKEAM-----EQQKGKNNDLREKnwkameala 486
Cdd:COG3096 919 LAQLEPLVAVLQSdpEQFEQLQADYLQAKEQQRRLKQQIFALS-EVVQRRPHFsyedaVGLLGENSDLNEK--------- 988
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 487 laeraCEEKLRSLTQAKEESEKQLHLAEAQTKETlLALLPGLSiSAHQNYAEWLQEFKEKGSEL-LKKPPTLEPSMDIVL 565
Cdd:COG3096 989 -----LRARLEQAEEARREAREQLRQAQAQYSQY-NQVLASLK-SSRDAKQQTLQELEQELEELgVQADAEAEERARIRR 1061
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 568918952 566 KLREAEETQNslQAECDQYRTILAETEGMLKDLQKSVEEEER 607
Cdd:COG3096 1062 DELHEELSQN--RSRRSQLEKQLTRCEAEMDSLQKRLRKAER 1101
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
275-844 |
4.99e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 4.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 275 SKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTS 354
Cdd:TIGR00618 162 SKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQS 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 355 HANLRADAEKAQEQQQRVAELHsklqssevEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQA-QDTQASH 433
Cdd:TIGR00618 242 HAYLTQKREAQEEQLKKQQLLK--------QLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIeQQAQRIH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 434 AEANQQQTRLKELESQVSCLEKETSELKEA---MEQQKGKNNDLREKNWKAMEALALAERACE--EKLRSLTQAKEESEK 508
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQQSSIEEQrrlLQTLHSQEIHIRDAHEVATSIREISCQQHTltQHIHTLQQQKTTLTQ 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 509 QLHLA---------EAQTKETLLALLPGL---------SISAHQNYAEWLQEFKEKGSELLKKPPTLEPSMdiVLKLREA 570
Cdd:TIGR00618 394 KLQSLckeldilqrEQATIDTRTSAFRDLqgqlahakkQQELQQRYAELCAAAITCTAQCEKLEKIHLQES--AQSLKER 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 571 EETQNSLQAECDQYRTILAETEG---MLKDLQKSVEEEERVWKAKV------GAAEEELHKSRVTVKHLEDIVEKLKGEL 641
Cdd:TIGR00618 472 EQQLQTKEQIHLQETRKKAVVLArllELQEEPCPLCGSCIHPNPARqdidnpGPLTRRMQRGEQTYAQLETSEEDVYHQL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 642 ESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLE----SQSQLDEAKSEAQKQSDELALVRQQLSDMRSH 717
Cdd:TIGR00618 552 TSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRlqdlTEKLSEAEDMLACEQHALLRKLQPEQDLQDVR 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 718 VEDGDVagspavppaEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRiQEELEKLRAAGPLESSGKEEITQ 797
Cdd:TIGR00618 632 LHLQQC---------SQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASR-QLALQKMQSEKEQLTYWKEMLAQ 701
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 568918952 798 LKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQL 844
Cdd:TIGR00618 702 CQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKEL 748
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
630-848 |
5.85e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 5.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 630 LEDIVEKLKGELES----SDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSDELA 705
Cdd:COG1196 191 LEDILGELERQLEPlerqAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 706 LVRQQLSDMRSHVEDgdvagspavppAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKL---- 781
Cdd:COG1196 271 ELRLELEELELELEE-----------AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELeeel 339
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568918952 782 -RAAGPLESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQLGKAE 848
Cdd:COG1196 340 eELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
143-476 |
8.71e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 8.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 143 HKATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQAS 222
Cdd:PRK03918 377 LKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEE 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 223 YRDHVKEVQQLQGKIRTLQEQLENgpntqlaRLQQENSILrdaLNQATSQVESKQNTELAKLRQELSKVNKElveksEAS 302
Cdd:PRK03918 457 YTAELKRIEKELKEIEEKERKLRK-------ELRELEKVL---KKESELIKLKELAEQLKELEEKLKKYNLE-----ELE 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 303 RQEEQQRKaLEAKAATFEKQVLQLqASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEK-----AQEQQQRVAELHS 377
Cdd:PRK03918 522 KKAEEYEK-LKEKLIKLKGEIKSL-KKELEKLEELKKKLAELEKKLDELEEELAELLKELEElgfesVEELEERLKELEP 599
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 378 ------KLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQqqtRLKELESQVS 451
Cdd:PRK03918 600 fyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELRE---EYLELSRELA 676
|
330 340
....*....|....*....|....*
gi 568918952 452 CLEKETSELKEAMEQQKGKNNDLRE 476
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTLEKLKE 701
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
337-803 |
1.21e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.42 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 337 LQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKlQSSEVEVKskceeLSSLHGQLKEARAENSQLTERIRS 416
Cdd:pfam05557 7 SKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESD-RNQELQKR-----IRLLEKREAEAEEALREQAELNRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 417 IEALLEAgqaqdtqaSHAEANQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEkL 496
Cdd:pfam05557 81 KKKYLEA--------LNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASE-A 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 497 RSLTQAKEESEKQLHLAEAQTKETLLALlpglsisahQNYAEWLQEFKEKGSELLKKP---PTLEPSMDIVLKLREAEET 573
Cdd:pfam05557 152 EQLRQNLEKQQSSLAEAEQRIKELEFEI---------QSQEQDSEIVKNSKSELARIPeleKELERLREHNKHLNENIEN 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 574 QNSLQAECDQYRTILAETEGM---LKDLQKSVEEEERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVREH 650
Cdd:pfam05557 223 KLLLKEEVEDLKRKLEREEKYreeAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSL 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 651 TSHLeaeleKHMAAASAECQNyakEVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVE--DGDVAGSPA 728
Cdd:pfam05557 303 TSSA-----RQLEKARRELEQ---ELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILEsyDKELTMSNY 374
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568918952 729 VPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAGPLE--SSGKEEITQLKERLE 803
Cdd:pfam05557 375 SPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLAdpSYSKEEVDSLRRKLE 451
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
453-848 |
1.27e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 453 LEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLpglSISA 532
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELE---KLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 533 HQNYAEWLQEFKEKGSELLKKPPTLEPSMDIVLKLREAEETQNSLQAECDQYRTILAE-----TEGMLKDLQKSVEEEER 607
Cdd:COG4717 124 LLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEElleqlSLATEEELQDLAEELEE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 608 VWKaKVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLE--------AELEKHMAAASAECQNYAKEVAGL 679
Cdd:COG4717 204 LQQ-RLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLllliaaalLALLGLGGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 680 RQLLLESQSQLDEAKSEAQKQSDEL-ALVRQQLSDMRSHVEDGDVAGSPAVPPAEQDPMKLKTQLERTEATLEAEQTRRQ 758
Cdd:COG4717 283 LGLLALLFLLLAREKASLGKEAEELqALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 759 KLTAEFEEAQRTACRIQ-----EELEKLRAAGPLESSGKEEITQLKERLEKEKRLTSDLGRAAIK--LQELLKTTQEQLT 831
Cdd:COG4717 363 LQLEELEQEIAALLAEAgvedeEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEeeLEEELEELEEELE 442
|
410
....*....|....*..
gi 568918952 832 KEKDTVKKLQEQLGKAE 848
Cdd:COG4717 443 ELEEELEELREELAELE 459
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
232-460 |
1.33e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.19 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 232 QLQGKIRTLQE--QLENGPNTQLARLQQENSILRDALNQATSQVESK---QNTELAKLRQELSKVNKELVEKSEASRQEE 306
Cdd:pfam07888 35 RLEECLQERAEllQAQEAANRQREKEKERYKRDREQWERQRRELESRvaeLKEELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 307 QQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRadaekaqEQQQRVAELHSKLQSSEVEV 386
Cdd:pfam07888 115 EEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRK-------EEEAERKQLQAKLQQTEEEL 187
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568918952 387 KSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQ--ASHAEANQQQTRLKELESQVSCLEKETSEL 460
Cdd:pfam07888 188 RSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAEneALLEELRSLQERLNASERKVEGLGEELSSM 263
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
280-607 |
2.81e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 280 ELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQlqaSHKESEEALQKRLEEVTRELCRAQtshanlr 359
Cdd:PRK04863 838 ELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPR---LNLLADETLADRVEEIREQLDEAE------- 907
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 360 aDAEKAQEQQQRVAELHSKLQSSeveVKSKCEELSSLHGQLKEARAENSQLTERIRSIealleagqaqdtqashAEANQQ 439
Cdd:PRK04863 908 -EAKRFVQQHGNALAQLEPIVSV---LQSDPEQFEQLKQDYQQAQQTQRDAKQQAFAL----------------TEVVQR 967
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 440 QTRLKELESQvSCLEKEtSELKEAMEQQkgknndlreknwkameaLALAERACEEKLRSLTQAKEESekqlhlaeAQTKE 519
Cdd:PRK04863 968 RAHFSYEDAA-EMLAKN-SDLNEKLRQR-----------------LEQAEQERTRAREQLRQAQAQL--------AQYNQ 1020
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 520 TLLALlpglsISAHQNYAEWLQEFKEkgsELLKKPPTLEPSMDIVLKLREaEETQNSL---QAECDQYRTILAETEGMLK 596
Cdd:PRK04863 1021 VLASL-----KSSYDAKRQMLQELKQ---ELQDLGVPADSGAEERARARR-DELHARLsanRSRRNQLEKQLTFCEAEMD 1091
|
330
....*....|.
gi 568918952 597 DLQKSVEEEER 607
Cdd:PRK04863 1092 NLTKKLRKLER 1102
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
271-360 |
3.62e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.09 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 271 SQVESKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHkeseEALQKRLEEVTRELcR 350
Cdd:PRK11448 141 ENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQL----EQLQEKAAETSQER-K 215
|
90
....*....|
gi 568918952 351 AQTSHANLRA 360
Cdd:PRK11448 216 QKRKEITDQA 225
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
335-520 |
4.21e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 4.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 335 EALQKRLEEVTRELCRAQTSHANLRADAEKAQEQ----QQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQL 410
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEynelQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 411 TERIRSIEALLEAGQAQD-----------TQASHAEANQQQTRLKELESQVSCLEKETSEL---KEAMEQQKGKNNDLRE 476
Cdd:COG3883 99 GGSVSYLDVLLGSESFSDfldrlsalskiADADADLLEELKADKAELEAKKAELEAKLAELealKAELEAAKAELEAQQA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568918952 477 KNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKET 520
Cdd:COG3883 179 EQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAA 222
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
282-415 |
4.37e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.84 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 282 AKLRQELSKVNKELVEKSEASRQEEQQRKALEakaatfekqvlqlqashKESEEALQKRLEEVTRELcraqtshANLRAD 361
Cdd:COG0542 400 ARVRMEIDSKPEELDELERRLEQLEIEKEALK-----------------KEQDEASFERLAELRDEL-------AELEEE 455
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 568918952 362 AEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIR 415
Cdd:COG0542 456 LEALKARWEAEKELIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLR 509
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
209-469 |
5.25e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 5.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 209 EQEIAAVQARMQASYR---DHVKEVQQLQGKIRTLQEQLengpnTQLARLQQENSIL---------------RDALNQAT 270
Cdd:PRK04863 836 EAELRQLNRRRVELERalaDHESQEQQQRSQLEQAKEGL-----SALNRLLPRLNLLadetladrveeireqLDEAEEAK 910
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 271 SQVESKQNTeLAKLRQELSKVN---------KELVEKSEASRQEEQQR----KALEAKAATFE-KQVLQLQASHKESEEA 336
Cdd:PRK04863 911 RFVQQHGNA-LAQLEPIVSVLQsdpeqfeqlKQDYQQAQQTQRDAKQQafalTEVVQRRAHFSyEDAAEMLAKNSDLNEK 989
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 337 LQKRLEEVTRELCRAQTShanLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSL-----HGQLKEARAENSQLT 411
Cdd:PRK04863 990 LRQRLEQAEQERTRAREQ---LRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLgvpadSGAEERARARRDELH 1066
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 412 ERIRsiealleagqAQDTQASHAEANQ--QQTRLKELESQVSCLEKETSELKEAMEQQKG 469
Cdd:PRK04863 1067 ARLS----------ANRSRRNQLEKQLtfCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
626-842 |
6.81e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 6.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 626 TVKHLEDIVEKLKGELESSDQVrehtshLEAELEKH-MAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSDEL 704
Cdd:COG3206 176 ALEFLEEQLPELRKELEEAEAA------LEEFRQKNgLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 705 ALVRQQLSdmrshvedgDVAGSPAVPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRtacRIQEELEKLRAA 784
Cdd:COG3206 250 GSGPDALP---------ELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRA---QLQQEAQRILAS 317
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568918952 785 GPLESSG-KEEITQLKERLEKEKRLTSDLGRAAIKLQEL---LKTTQEQLTkekDTVKKLQE 842
Cdd:COG3206 318 LEAELEAlQAREASLQAQLAQLEARLAELPELEAELRRLereVEVARELYE---SLLQRLEE 376
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
228-442 |
7.93e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.43 E-value: 7.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 228 KEVQQLQGKIRTLQEQLENgPNTQLARLQQENSILRDALNQATSQVESKQNtELAKLRQELSKVNKELVEKSEASRQEEQ 307
Cdd:COG3883 23 KELSELQAELEAAQAELDA-LQAELEELNEEYNELQAELEALQAEIDKLQA-EIAEAEAEIEERREELGERARALYRSGG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 308 QRKALEA------------------KAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQ 369
Cdd:COG3883 101 SVSYLDVllgsesfsdfldrlsalsKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQ 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568918952 370 QRVAelhSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTR 442
Cdd:COG3883 181 EALL---AQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAG 250
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
158-382 |
9.35e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.43 E-value: 9.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 158 QLEEKEKLLATEQEDAAVAKSKLRELNKEMASekakAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQQLQGKI 237
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEE----LNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 238 RTLQEQleNGPNTQLARLQQENSI--------LRDALNQATSQVESKQNTELAKLRQELSKVNKELVEKSEASRQEEQQR 309
Cdd:COG3883 93 RALYRS--GGSVSYLDVLLGSESFsdfldrlsALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568918952 310 KALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSS 382
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 243
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
177-394 |
9.43e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 39.61 E-value: 9.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 177 KSKLRELNKEMASEKAKAAAGEAKVKKQ--LVAREQEIAAV-QARMQASYRDHVKEVQQLQGKIRTLQEQLENgpntqlA 253
Cdd:PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIKTYnkNIEEQRKKNGEnIARKQNKYDELVEEAKTIKAEIEELTDELLN------L 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 254 RLQQENsiLRDALNqatsqvesKQNTELAKLRQELSKVNKELV--EK-------SEASRQEEQQRKALEAKAATFEKQVL 324
Cdd:PHA02562 247 VMDIED--PSAALN--------KLNTAAAKIKSKIEQFQKVIKmyEKggvcptcTQQISEGPDRITKIKDKLKELQHSLE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 325 QLQASHKESEE------ALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELH-------SKLQSSEVEVKSKCE 391
Cdd:PHA02562 317 KLDTAIDELEEimdefnEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFvdnaeelAKLQDELDKIVKTKS 396
|
...
gi 568918952 392 ELS 394
Cdd:PHA02562 397 ELV 399
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
378-525 |
9.63e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 9.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 378 KLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQD----TQASHAEANQQQTRLKELESQVSCL 453
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvasAEREIAELEAELERLDASSDDLAAL 690
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568918952 454 EKETSELKEAMEQQKGKNNDLREKnwkamealalaERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALL 525
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGE-----------IGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL 751
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
362-802 |
9.93e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.55 E-value: 9.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 362 AEKAQEQQQRVAELHSKLQSSEvevkskcEELSSLHGQLKEARAENSQLTERirsiEALLEagqaQDTQASHAEANQQQT 441
Cdd:COG3096 277 ANERRELSERALELRRELFGAR-------RQLAEEQYRLVEMARELEELSAR----ESDLE----QDYQAASDHLNLVQT 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 442 RLKELESQVSCLEkETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEE---KLRSLTQAKEESEK---QLH---- 511
Cdd:COG3096 342 ALRQQEKIERYQE-DLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSlksQLADYQQALDVQQTraiQYQqavq 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 512 -LAEAQTketlLALLPGLSISahqNYAEWLQEFKEKGSELLKKPPTLEPsmdivlKLREAEETQNSLQAECDQYRTILAE 590
Cdd:COG3096 421 aLEKARA----LCGLPDLTPE---NAEDYLAAFRAKEQQATEEVLELEQ------KLSVADAARRQFEKAYELVCKIAGE 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 591 TE---------GMLKDL--QKSVEEEERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELE 659
Cdd:COG3096 488 VErsqawqtarELLRRYrsQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLE 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918952 660 KHMAAAsAECQnyaKEVAGLRQLLLESQSQLDEAKSEA---QKQSDELALVRQQLSDmrshvedgDVAGSPAVPPAEQdp 736
Cdd:COG3096 568 ELEEQA-AEAV---EQRSELRQQLEQLRARIKELAARApawLAAQDALERLREQSGE--------ALADSQEVTAAMQ-- 633
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568918952 737 mklkTQLER-TEATLEAEQTRRQKLtaefeeaqrtacRIQEELEKLRAAGPLESSgkeEITQLKERL 802
Cdd:COG3096 634 ----QLLEReREATVERDELAARKQ------------ALESQIERLSQPGGAEDP---RLLALAERL 681
|
|
| |
