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Conserved domains on  [gi|505792830|ref|XP_004606263|]
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PREDICTED: calmegin [Sorex araneus]

Protein Classification

calreticulin family protein( domain architecture ID 10446997)

calreticulin family protein similar to calnexin which is a calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Calreticulin pfam00262
Calreticulin family;
62-430 0e+00

Calreticulin family;


:

Pssm-ID: 425564  Cd Length: 369  Bit Score: 636.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505792830   62 FAETFDSGKLAG-WVLSKAKKDGmADEEMSIYDGRWEIEELKENR-VPGDRGLVLKSRAKHHAISAILAKPFIFADEPLI 139
Cdd:pfam00262   1 FFEQFDDYDWESrWIPSKAKKDD-SDDEIAKYDGKWAVEEPTVYPgFEGDKGLVLKSKAKHHAISAKLDKPIDFKDKTLV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505792830  140 VQYEVNFQDGIDCGGAYIKLLADTDDLNLENFYDKTSYTIMFGPDKCGEDYKLHFIFRHKHPQTGVFEEKHARPPetdlK 219
Cdd:pfam00262  80 VQYEVKLQNGLECGGAYIKLLSESNDLDLEEFSDKTPYTIMFGPDKCGSTNKVHFIFRHKNPKTGEYEEKHLKKP----P 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505792830  220 KFFTDKKTHLYTLVMNPDDTFEILIDQIVVNKGSLLEDVVPPINPPKEIEDPMDKKPPDWDDRAKIPDPKAVKPDDWDES 299
Cdd:pfam00262 156 KIRTDKLTHLYTLILRPDNTFEIRIDGEVVKSGNLLEDFKPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVKPDDWDED 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505792830  300 EPAQIEDTSVTKPEGWLDDEPENIPDPAAEKPDDWNEDMDGLWEAPLIANPACH--VGCGEWKPPMIDNPEYKGIWTPPL 377
Cdd:pfam00262 236 APEFIPDPDATKPEGWLEDEPEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKCEeaPGCGPWKPPMIKNPKYKGKWKPPM 315
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 505792830  378 VDNPSYQGVWSPRKIPNPDYFEDDHPF-LLTAFRALGLELWSMTSDIYFDNFII 430
Cdd:pfam00262 316 IDNPNYKGEWKPRKIPNPDYFEDKHPFsNLEPIGAIGFELWSMSKDILFDNIYI 369
 
Name Accession Description Interval E-value
Calreticulin pfam00262
Calreticulin family;
62-430 0e+00

Calreticulin family;


Pssm-ID: 425564  Cd Length: 369  Bit Score: 636.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505792830   62 FAETFDSGKLAG-WVLSKAKKDGmADEEMSIYDGRWEIEELKENR-VPGDRGLVLKSRAKHHAISAILAKPFIFADEPLI 139
Cdd:pfam00262   1 FFEQFDDYDWESrWIPSKAKKDD-SDDEIAKYDGKWAVEEPTVYPgFEGDKGLVLKSKAKHHAISAKLDKPIDFKDKTLV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505792830  140 VQYEVNFQDGIDCGGAYIKLLADTDDLNLENFYDKTSYTIMFGPDKCGEDYKLHFIFRHKHPQTGVFEEKHARPPetdlK 219
Cdd:pfam00262  80 VQYEVKLQNGLECGGAYIKLLSESNDLDLEEFSDKTPYTIMFGPDKCGSTNKVHFIFRHKNPKTGEYEEKHLKKP----P 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505792830  220 KFFTDKKTHLYTLVMNPDDTFEILIDQIVVNKGSLLEDVVPPINPPKEIEDPMDKKPPDWDDRAKIPDPKAVKPDDWDES 299
Cdd:pfam00262 156 KIRTDKLTHLYTLILRPDNTFEIRIDGEVVKSGNLLEDFKPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVKPDDWDED 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505792830  300 EPAQIEDTSVTKPEGWLDDEPENIPDPAAEKPDDWNEDMDGLWEAPLIANPACH--VGCGEWKPPMIDNPEYKGIWTPPL 377
Cdd:pfam00262 236 APEFIPDPDATKPEGWLEDEPEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKCEeaPGCGPWKPPMIKNPKYKGKWKPPM 315
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 505792830  378 VDNPSYQGVWSPRKIPNPDYFEDDHPF-LLTAFRALGLELWSMTSDIYFDNFII 430
Cdd:pfam00262 316 IDNPNYKGEWKPRKIPNPDYFEDKHPFsNLEPIGAIGFELWSMSKDILFDNIYI 369
 
Name Accession Description Interval E-value
Calreticulin pfam00262
Calreticulin family;
62-430 0e+00

Calreticulin family;


Pssm-ID: 425564  Cd Length: 369  Bit Score: 636.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505792830   62 FAETFDSGKLAG-WVLSKAKKDGmADEEMSIYDGRWEIEELKENR-VPGDRGLVLKSRAKHHAISAILAKPFIFADEPLI 139
Cdd:pfam00262   1 FFEQFDDYDWESrWIPSKAKKDD-SDDEIAKYDGKWAVEEPTVYPgFEGDKGLVLKSKAKHHAISAKLDKPIDFKDKTLV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505792830  140 VQYEVNFQDGIDCGGAYIKLLADTDDLNLENFYDKTSYTIMFGPDKCGEDYKLHFIFRHKHPQTGVFEEKHARPPetdlK 219
Cdd:pfam00262  80 VQYEVKLQNGLECGGAYIKLLSESNDLDLEEFSDKTPYTIMFGPDKCGSTNKVHFIFRHKNPKTGEYEEKHLKKP----P 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505792830  220 KFFTDKKTHLYTLVMNPDDTFEILIDQIVVNKGSLLEDVVPPINPPKEIEDPMDKKPPDWDDRAKIPDPKAVKPDDWDES 299
Cdd:pfam00262 156 KIRTDKLTHLYTLILRPDNTFEIRIDGEVVKSGNLLEDFKPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVKPDDWDED 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505792830  300 EPAQIEDTSVTKPEGWLDDEPENIPDPAAEKPDDWNEDMDGLWEAPLIANPACH--VGCGEWKPPMIDNPEYKGIWTPPL 377
Cdd:pfam00262 236 APEFIPDPDATKPEGWLEDEPEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKCEeaPGCGPWKPPMIKNPKYKGKWKPPM 315
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 505792830  378 VDNPSYQGVWSPRKIPNPDYFEDDHPF-LLTAFRALGLELWSMTSDIYFDNFII 430
Cdd:pfam00262 316 IDNPNYKGEWKPRKIPNPDYFEDKHPFsNLEPIGAIGFELWSMSKDILFDNIYI 369
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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