NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|47085883|ref|NP_998296|]
View 

malate dehydrogenase, mitochondrial [Danio rerio]

Protein Classification

malate dehydrogenase( domain architecture ID 10102004)

malate dehydrogenase specifically oxidizes malate to oxaloacetate

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
MDH_glyoxysomal_mitochondrial cd01337
Glyoxysomal and mitochondrial malate dehydrogenases; MDH is one of the key enzymes in the ...
25-333 0e+00

Glyoxysomal and mitochondrial malate dehydrogenases; MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


:

Pssm-ID: 133422 [Multi-domain]  Cd Length: 310  Bit Score: 600.63  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  25 KVAVLGASGGIGQPLSLLLKNSPLVSELSLFDIAHTPGVAADLSHIETRAHVKGYIGADQLGDALKGCEVVVIPAGVPRK 104
Cdd:cd01337   2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPRK 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 105 PGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNSTIPITSEVMKKHGVYNPNKIFGVTTLDIVRANTFVAELK 184
Cdd:cd01337  82 PGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELL 161
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 185 GLDPARVNVPVVGGHAGITIIPLISQCTPKVEFPADQLSALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFTFSLLDA 264
Cdd:cd01337 162 GLDPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLRG 241
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 47085883 265 MNGKEGVVECSFVRSEETECKYFSTPLLLGKNGIEKNLGLGKLSAFEEKLVADAMTELKGSIKKGEDFV 333
Cdd:cd01337 242 LKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVDFV 310
 
Name Accession Description Interval E-value
MDH_glyoxysomal_mitochondrial cd01337
Glyoxysomal and mitochondrial malate dehydrogenases; MDH is one of the key enzymes in the ...
25-333 0e+00

Glyoxysomal and mitochondrial malate dehydrogenases; MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133422 [Multi-domain]  Cd Length: 310  Bit Score: 600.63  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  25 KVAVLGASGGIGQPLSLLLKNSPLVSELSLFDIAHTPGVAADLSHIETRAHVKGYIGADQLGDALKGCEVVVIPAGVPRK 104
Cdd:cd01337   2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPRK 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 105 PGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNSTIPITSEVMKKHGVYNPNKIFGVTTLDIVRANTFVAELK 184
Cdd:cd01337  82 PGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELL 161
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 185 GLDPARVNVPVVGGHAGITIIPLISQCTPKVEFPADQLSALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFTFSLLDA 264
Cdd:cd01337 162 GLDPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLRG 241
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 47085883 265 MNGKEGVVECSFVRSEETECKYFSTPLLLGKNGIEKNLGLGKLSAFEEKLVADAMTELKGSIKKGEDFV 333
Cdd:cd01337 242 LKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVDFV 310
PLN00106 PLN00106
malate dehydrogenase
6-328 0e+00

malate dehydrogenase


Pssm-ID: 215058 [Multi-domain]  Cd Length: 323  Bit Score: 540.31  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883    6 ARPTASLVRSLSTSSQNNAKVAVLGASGGIGQPLSLLLKNSPLVSELSLFDIAHTPGVAADLSHIETRAHVKGYIGADQL 85
Cdd:PLN00106   1 SMEASSLRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   86 GDALKGCEVVVIPAGVPRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNSTIPITSEVMKKHGVYNPNKI 165
Cdd:PLN00106  81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  166 FGVTTLDIVRANTFVAELKGLDPARVNVPVVGGHAGITIIPLISQCTPKVEFPADQLSALTGRIQEAGTEVVKAKAGAGS 245
Cdd:PLN00106 161 FGVTTLDVVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGS 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  246 ATLSMAYAGARFTFSLLDAMNGKEGVVECSFVRSEETECKYFSTPLLLGKNGIEKNLGLGKLSAFEEKLVADAMTELKGS 325
Cdd:PLN00106 241 ATLSMAYAAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKAS 320

                 ...
gi 47085883  326 IKK 328
Cdd:PLN00106 321 IEK 323
MDH_euk_gproteo TIGR01772
malate dehydrogenase, NAD-dependent; This model represents the NAD-dependent malate ...
25-334 0e+00

malate dehydrogenase, NAD-dependent; This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. [Energy metabolism, TCA cycle]


Pssm-ID: 130833 [Multi-domain]  Cd Length: 312  Bit Score: 522.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883    25 KVAVLGASGGIGQPLSLLLKNSPLVSELSLFDIAHTPGVAADLSHIETRAHVKGYIGADQLGDALKGCEVVVIPAGVPRK 104
Cdd:TIGR01772   1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   105 PGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNSTIPITSEVMKKHGVYNPNKIFGVTTLDIVRANTFVAELK 184
Cdd:TIGR01772  81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   185 GLDPARVNVPVVGGHAGITIIPLISQCTPKVEFPADQLSALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFTFSLLDA 264
Cdd:TIGR01772 161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 47085883   265 MNGKEGVVECSFVRSE-ETECKYFSTPLLLGKNGIEKNLGLGKLSAFEEKLVADAMTELKGSIKKGEDFVA 334
Cdd:TIGR01772 241 LKGEEGVVECAYVESDgVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFVA 311
Ldh_1_C pfam02866
lactate/malate dehydrogenase, alpha/beta C-terminal domain; L-lactate dehydrogenases are ...
169-333 5.38e-61

lactate/malate dehydrogenase, alpha/beta C-terminal domain; L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes.


Pssm-ID: 397136  Cd Length: 173  Bit Score: 192.58  E-value: 5.38e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   169 TTLDIVRANTFVAELKGLDPARVNVPVVGGHAG----------ITIIPLISQCTPKVEFPADQLSALTGRIQEAGTEVVK 238
Cdd:pfam02866   1 TTLDINRARTFLAEKAGVDPRVVNVPVIGGHSGtefpdwshanVTIIPLQSQVKENLKDSEWELEELTHRVQNAGYEVIK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   239 AKagAGSATLSMAYAGARFTFSLLDAMNGK--EGVVECSFVRSEETEckYFSTPLLLGKNGIEKNLGLGKLSAFEEKLVA 316
Cdd:pfam02866  81 AK--AGSATLSMAVAGARFIRAILRGEGGVlsVGVYEDGYYGVPDDI--YFSFPVVLGKDGVEKVLEIGPLNDFEREKME 156
                         170
                  ....*....|....*..
gi 47085883   317 DAMTELKGSIKKGEDFV 333
Cdd:pfam02866 157 KSAAELKKEIEKGFAFV 173
Mdh COG0039
Malate/lactate dehydrogenase [Energy production and conversion]; Malate/lactate dehydrogenase ...
25-327 1.78e-49

Malate/lactate dehydrogenase [Energy production and conversion]; Malate/lactate dehydrogenase is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 439809 [Multi-domain]  Cd Length: 302  Bit Score: 167.12  E-value: 1.78e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  25 KVAVLGAsGGIGQPLSLLLKNSPLVSELSLFDIAHTP--GVAADLSH------IETRAHVKGYigadqlgDALKGCEVVV 96
Cdd:COG0039   2 KVAIIGA-GNVGSTLAFRLASGGLADELVLIDINEGKaeGEALDLADafpllgFDVKITAGDY-------EDLADADVVV 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  97 IPAGVPRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNstiPITSEVMKKHGvYNPNKIFGV-TTLDIVR 175
Cdd:COG0039  74 ITAGAPRKPGMSRLDLLEANAKIFKSVGEAIKKYAPDAIVLVVTNPVD---VMTYIAQKASG-LPKERVIGMgTVLDSAR 149
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 176 ANTFVAELKGLDPARVNVPVVGGHaGITIIPLISQCT----P---KVEFPADQLSALTGRIQEAGTEVVKAK----AGAG 244
Cdd:COG0039 150 FRSFLAEKLGVSPRDVHAYVLGEH-GDSMVPLWSHATvggiPlteLIKETDEDLDEIIERVRKGGAEIIEGKgstyYAIA 228
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 245 SATLSMAYA-----GARFTFS-LLDAMNGKEGVvecsfvrseeteckYFSTPLLLGKNGIEKNLGLgKLSAFEEKLVADA 318
Cdd:COG0039 229 AAAARIVEAilrdeKRVLPVSvYLDGEYGIEDV--------------YLGVPVVIGRNGVEKIVEL-ELTDEERAKLDAS 293

                ....*....
gi 47085883 319 MTELKGSIK 327
Cdd:COG0039 294 AEELKEEID 302
 
Name Accession Description Interval E-value
MDH_glyoxysomal_mitochondrial cd01337
Glyoxysomal and mitochondrial malate dehydrogenases; MDH is one of the key enzymes in the ...
25-333 0e+00

Glyoxysomal and mitochondrial malate dehydrogenases; MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133422 [Multi-domain]  Cd Length: 310  Bit Score: 600.63  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  25 KVAVLGASGGIGQPLSLLLKNSPLVSELSLFDIAHTPGVAADLSHIETRAHVKGYIGADQLGDALKGCEVVVIPAGVPRK 104
Cdd:cd01337   2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPRK 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 105 PGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNSTIPITSEVMKKHGVYNPNKIFGVTTLDIVRANTFVAELK 184
Cdd:cd01337  82 PGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELL 161
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 185 GLDPARVNVPVVGGHAGITIIPLISQCTPKVEFPADQLSALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFTFSLLDA 264
Cdd:cd01337 162 GLDPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLRG 241
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 47085883 265 MNGKEGVVECSFVRSEETECKYFSTPLLLGKNGIEKNLGLGKLSAFEEKLVADAMTELKGSIKKGEDFV 333
Cdd:cd01337 242 LKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVDFV 310
PLN00106 PLN00106
malate dehydrogenase
6-328 0e+00

malate dehydrogenase


Pssm-ID: 215058 [Multi-domain]  Cd Length: 323  Bit Score: 540.31  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883    6 ARPTASLVRSLSTSSQNNAKVAVLGASGGIGQPLSLLLKNSPLVSELSLFDIAHTPGVAADLSHIETRAHVKGYIGADQL 85
Cdd:PLN00106   1 SMEASSLRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   86 GDALKGCEVVVIPAGVPRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNSTIPITSEVMKKHGVYNPNKI 165
Cdd:PLN00106  81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  166 FGVTTLDIVRANTFVAELKGLDPARVNVPVVGGHAGITIIPLISQCTPKVEFPADQLSALTGRIQEAGTEVVKAKAGAGS 245
Cdd:PLN00106 161 FGVTTLDVVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGS 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  246 ATLSMAYAGARFTFSLLDAMNGKEGVVECSFVRSEETECKYFSTPLLLGKNGIEKNLGLGKLSAFEEKLVADAMTELKGS 325
Cdd:PLN00106 241 ATLSMAYAAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKAS 320

                 ...
gi 47085883  326 IKK 328
Cdd:PLN00106 321 IEK 323
MDH_euk_gproteo TIGR01772
malate dehydrogenase, NAD-dependent; This model represents the NAD-dependent malate ...
25-334 0e+00

malate dehydrogenase, NAD-dependent; This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. [Energy metabolism, TCA cycle]


Pssm-ID: 130833 [Multi-domain]  Cd Length: 312  Bit Score: 522.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883    25 KVAVLGASGGIGQPLSLLLKNSPLVSELSLFDIAHTPGVAADLSHIETRAHVKGYIGADQLGDALKGCEVVVIPAGVPRK 104
Cdd:TIGR01772   1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   105 PGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNSTIPITSEVMKKHGVYNPNKIFGVTTLDIVRANTFVAELK 184
Cdd:TIGR01772  81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   185 GLDPARVNVPVVGGHAGITIIPLISQCTPKVEFPADQLSALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFTFSLLDA 264
Cdd:TIGR01772 161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 47085883   265 MNGKEGVVECSFVRSE-ETECKYFSTPLLLGKNGIEKNLGLGKLSAFEEKLVADAMTELKGSIKKGEDFVA 334
Cdd:TIGR01772 241 LKGEEGVVECAYVESDgVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFVA 311
PTZ00325 PTZ00325
malate dehydrogenase; Provisional
17-335 9.68e-156

malate dehydrogenase; Provisional


Pssm-ID: 240360 [Multi-domain]  Cd Length: 321  Bit Score: 439.10  E-value: 9.68e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   17 STSSQNNAKVAVLGASGGIGQPLSLLLKNSPLVSELSLFDIAHTPGVAADLSHIETRAHVKGYIGADQLGDALKGCEVVV 96
Cdd:PTZ00325   2 RPSALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   97 IPAGVPRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNSTIPITSEVMKKHGVYNPNKIFGVTTLDIVRA 176
Cdd:PTZ00325  82 ICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRA 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  177 NTFVAELKGLDPARVNVPVVGGHAGITIIPLISQcTPkVEFPADQLSALTGRIQEAGTEVVKAKAGAGSATLSMAYAGAR 256
Cdd:PTZ00325 162 RKFVAEALGMNPYDVNVPVVGGHSGVTIVPLLSQ-TG-LSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAE 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  257 FTFSLLDAMNGKEGVVECSFVRSE-ETECKYFSTPLLLGKNGIEKNLGLGKLSAFEEKLVADAMTELKGSIKKGEDFVAN 335
Cdd:PTZ00325 240 WSTSVLKALRGDKGIVECAFVESDmRPECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAAVPDLKKNIEKGLEFARK 319
Ldh_1_C pfam02866
lactate/malate dehydrogenase, alpha/beta C-terminal domain; L-lactate dehydrogenases are ...
169-333 5.38e-61

lactate/malate dehydrogenase, alpha/beta C-terminal domain; L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes.


Pssm-ID: 397136  Cd Length: 173  Bit Score: 192.58  E-value: 5.38e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   169 TTLDIVRANTFVAELKGLDPARVNVPVVGGHAG----------ITIIPLISQCTPKVEFPADQLSALTGRIQEAGTEVVK 238
Cdd:pfam02866   1 TTLDINRARTFLAEKAGVDPRVVNVPVIGGHSGtefpdwshanVTIIPLQSQVKENLKDSEWELEELTHRVQNAGYEVIK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   239 AKagAGSATLSMAYAGARFTFSLLDAMNGK--EGVVECSFVRSEETEckYFSTPLLLGKNGIEKNLGLGKLSAFEEKLVA 316
Cdd:pfam02866  81 AK--AGSATLSMAVAGARFIRAILRGEGGVlsVGVYEDGYYGVPDDI--YFSFPVVLGKDGVEKVLEIGPLNDFEREKME 156
                         170
                  ....*....|....*..
gi 47085883   317 DAMTELKGSIKKGEDFV 333
Cdd:pfam02866 157 KSAAELKKEIEKGFAFV 173
Ldh_1_N pfam00056
lactate/malate dehydrogenase, NAD binding domain; L-lactate dehydrogenases are metabolic ...
24-167 2.77e-56

lactate/malate dehydrogenase, NAD binding domain; L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.


Pssm-ID: 395010 [Multi-domain]  Cd Length: 141  Bit Score: 179.34  E-value: 2.77e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883    24 AKVAVLGASGGIGQPLSLLLKNSPLVSELSLFDIA--HTPGVAADLSHIETRAHVKGYIGaDQLGDALKGCEVVVIPAGV 101
Cdd:pfam00056   1 VKVAVVGAAGGVGQSLAFLLANKGLADELVLYDIVkeKLEGVAMDLSHGSTFLLVPGIVG-GGDYEDLKDADVVVITAGV 79
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 47085883   102 PRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNstipITSEVMKKHGVYNPNKIFG 167
Cdd:pfam00056  80 PRKPGMTRLDLLNVNAKIFKSIGPALAKYAPNAIVLVVSNPVD----ILTYVAWKASGFPPNRVFG 141
Mdh COG0039
Malate/lactate dehydrogenase [Energy production and conversion]; Malate/lactate dehydrogenase ...
25-327 1.78e-49

Malate/lactate dehydrogenase [Energy production and conversion]; Malate/lactate dehydrogenase is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 439809 [Multi-domain]  Cd Length: 302  Bit Score: 167.12  E-value: 1.78e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  25 KVAVLGAsGGIGQPLSLLLKNSPLVSELSLFDIAHTP--GVAADLSH------IETRAHVKGYigadqlgDALKGCEVVV 96
Cdd:COG0039   2 KVAIIGA-GNVGSTLAFRLASGGLADELVLIDINEGKaeGEALDLADafpllgFDVKITAGDY-------EDLADADVVV 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  97 IPAGVPRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNstiPITSEVMKKHGvYNPNKIFGV-TTLDIVR 175
Cdd:COG0039  74 ITAGAPRKPGMSRLDLLEANAKIFKSVGEAIKKYAPDAIVLVVTNPVD---VMTYIAQKASG-LPKERVIGMgTVLDSAR 149
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 176 ANTFVAELKGLDPARVNVPVVGGHaGITIIPLISQCT----P---KVEFPADQLSALTGRIQEAGTEVVKAK----AGAG 244
Cdd:COG0039 150 FRSFLAEKLGVSPRDVHAYVLGEH-GDSMVPLWSHATvggiPlteLIKETDEDLDEIIERVRKGGAEIIEGKgstyYAIA 228
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 245 SATLSMAYA-----GARFTFS-LLDAMNGKEGVvecsfvrseeteckYFSTPLLLGKNGIEKNLGLgKLSAFEEKLVADA 318
Cdd:COG0039 229 AAAARIVEAilrdeKRVLPVSvYLDGEYGIEDV--------------YLGVPVVIGRNGVEKIVEL-ELTDEERAKLDAS 293

                ....*....
gi 47085883 319 MTELKGSIK 327
Cdd:COG0039 294 AEELKEEID 302
LDH-like_MDH cd01339
L-lactate dehydrogenase-like malate dehydrogenase proteins; Members of this subfamily have an ...
26-327 3.30e-43

L-lactate dehydrogenase-like malate dehydrogenase proteins; Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133424 [Multi-domain]  Cd Length: 300  Bit Score: 150.70  E-value: 3.30e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  26 VAVLGAsGGIGQPLSLLLKNSPLVsELSLFDIAHTP--GVAADLSH----IETRAHVKGyiGADQlgDALKGCEVVVIPA 99
Cdd:cd01339   1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLpqGKALDISQaapiLGSDTKVTG--TNDY--EDIAGSDVVVITA 74
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 100 GVPRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNstipITSEVMKKHGVYNPNKIFGV-TTLDIVRANT 178
Cdd:cd01339  75 GIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLD----VMTYVAYKASGFPRNRVIGMaGVLDSARFRY 150
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 179 FVAELKGLDPARVNVPVVGGHaGITIIPLISQCT----PKVEF-PADQLSALTGRIQEAGTEVVKAKaGAGSATLSMAYA 253
Cdd:cd01339 151 FIAEELGVSVKDVQAMVLGGH-GDTMVPLPRYSTvggiPLTELiTKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAA 228
                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 47085883 254 GARFTFSLLdamNGKEGVVECSFVRSEETECK--YFSTPLLLGKNGIEKNLGLgKLSAFEEKLVADAMTELKGSIK 327
Cdd:cd01339 229 IAEMVEAIL---KDKKRVLPCSAYLEGEYGIKdiFVGVPVVLGKNGVEKIIEL-DLTDEEKEAFDKSVESVKELID 300
PRK06223 PRK06223
malate dehydrogenase; Reviewed
22-328 2.45e-41

malate dehydrogenase; Reviewed


Pssm-ID: 180477 [Multi-domain]  Cd Length: 307  Bit Score: 146.04  E-value: 2.45e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   22 NNAKVAVLGAsGGIGQPLSLLLKNSPLVsELSLFDIAH--TPGVAADLSH----IETRAHVKG---YigadqlgDALKGC 92
Cdd:PRK06223   1 ARKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEgvPQGKALDIAEaapvEGFDTKITGtndY-------EDIAGS 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   93 EVVVIPAGVPRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNStipITSEVMKKHGvYNPNKIFGVTT-L 171
Cdd:PRK06223  72 DVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDA---MTYVALKESG-FPKNRVIGMAGvL 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  172 DIVRANTFVAELKGLDPARVNVPVVGGHaGITIIPLISQCT-----PKVEFPADQLSALTGRIQEAGTEVVKAKaGAGSA 246
Cdd:PRK06223 148 DSARFRTFIAEELNVSVKDVTAFVLGGH-GDSMVPLVRYSTvggipLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSA 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  247 TlsmaYAGARFTFSLLDAM-NGKEGVVECSFVRSEETECK--YFSTPLLLGKNGIEKNLGLgKLSAFEEKLVADAMTELK 323
Cdd:PRK06223 226 Y----YAPAASIAEMVEAIlKDKKRVLPCSAYLEGEYGVKdvYVGVPVKLGKNGVEKIIEL-ELDDEEKAAFDKSVEAVK 300

                 ....*
gi 47085883  324 GSIKK 328
Cdd:PRK06223 301 KLIEA 305
LDH_MDH_like cd00650
NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family; Members ...
26-323 4.58e-41

NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family; Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133419 [Multi-domain]  Cd Length: 263  Bit Score: 144.38  E-value: 4.58e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  26 VAVLGASGGIGQPLSLLLKNSP--LVSELSLFDI--AHTPGVAADLSHIETRAHVKGYIGADQLGDALKGCEVVVIPAGV 101
Cdd:cd00650   1 IAVIGAGGNVGPALAFGLADGSvlLAIELVLYDIdeEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 102 PRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNstipITSEVMKKHGVYNPNKIFGVTTLDIVRANTFVA 181
Cdd:cd00650  81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILA 156
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 182 ELKGLDPARVNVPVVGGHAGiTIIPLISQCTpkvefpadqlsaltgriqeagtevvkakagagsatlsMAYAGARFTFSL 261
Cdd:cd00650 157 EKLGVDPDDVKVYILGEHGG-SQVPDWSTVR-------------------------------------IATSIADLIRSL 198
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 47085883 262 LDAmngkEGVVECSFVRSE----ETECKYFSTPLLLGKNGIEKNLGLGKLSAFEEKLVADAMTELK 323
Cdd:cd00650 199 LND----EGEILPVGVRNNgqigIPDDVVVSVPCIVGKNGVEEPIEVGLTDFELEKLQKSADTLKK 260
LDH_like cd00300
L-lactate dehydrogenase-like enzymes; Members of this subfamily are tetrameric NAD-dependent ...
26-323 1.70e-34

L-lactate dehydrogenase-like enzymes; Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133418 [Multi-domain]  Cd Length: 300  Bit Score: 127.77  E-value: 1.70e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  26 VAVLGAsGGIGQPLSLLLKNSPLVSELSLFDI--AHTPGVAADLSH-IETRAHVKGYIGADQlgDALKGCEVVVIPAGVP 102
Cdd:cd00300   1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVneEKAKGDALDLSHaSAFLATGTIVRGGDY--ADAADADIVVITAGAP 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 103 RKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNStipITSEVMKKHGvYNPNKIFGV-TTLDIVRANTFVA 181
Cdd:cd00300  78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDI---LTYVAQKLSG-LPKNRVIGSgTLLDSARFRSLLA 153
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 182 ELKGLDPARVNVPVVGGHaGITIIPLISQCT-------PKVEFPADQLSALTGRIQEAGTEVVKAKagaGSATLSMAYAG 254
Cdd:cd00300 154 EKLDVDPQSVHAYVLGEH-GDSQVVAWSTATvgglpleELAPFTKLDLEAIEEEVRTSGYEIIRLK---GATNYGIATAI 229
                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 47085883 255 ARFTFS-LLDamngKEGVVECSFVRSEETECK--YFSTPLLLGKNGIEKNLgLGKLSAFEEKLVADAMTELK 323
Cdd:cd00300 230 ADIVKSiLLD----ERRVLPVSAVQEGQYGIEdvALSVPAVVGREGVVRIL-EIPLTEDEEAKLQKSAEALK 296
PTZ00082 PTZ00082
L-lactate dehydrogenase; Provisional
24-323 2.02e-33

L-lactate dehydrogenase; Provisional


Pssm-ID: 173376 [Multi-domain]  Cd Length: 321  Bit Score: 125.57  E-value: 2.02e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   24 AKVAVLGaSGGIGQPLSLL--LKNsplVSELSLFDIAHT--PGVAADLSHIETRAHVK-GYIGADQLGDaLKGCEVVVIP 98
Cdd:PTZ00082   7 RKISLIG-SGNIGGVMAYLivLKN---LGDVVLFDIVKNipQGKALDISHSNVIAGSNsKVIGTNNYED-IAGSDVVIVT 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   99 AGVPRKPGMT-----RDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNstipITSEVMKKHGVYNPNKIFGVT-TLD 172
Cdd:PTZ00082  82 AGLTKRPGKSdkewnRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD----VMVKLLQEHSGLPKNKVCGMAgVLD 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  173 IVRANTFVAELKGLDPARVNVPVVGGHaGITIIPLISQCT----PKVEF------PADQLSALTGRIQEAGTEVVKAkAG 242
Cdd:PTZ00082 158 SSRLRTYIAEKLGVNPRDVHASVIGAH-GDKMVPLPRYVTvggiPLSEFikkgliTQEEIDEIVERTRNTGKEIVDL-LG 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  243 AGSATLSMAYAGARFTFSLLdamNGKEGVVECSFVRSEETECK--YFSTPLLLGKNGIEKNLGLgKLSAFEEKLVADAMT 320
Cdd:PTZ00082 236 TGSAYFAPAAAAIEMAEAYL---KDKKRVLPCSAYLEGQYGHKdiYMGTPAVIGANGVEKIIEL-DLTPEEQKKFDESIK 311

                 ...
gi 47085883  321 ELK 323
Cdd:PTZ00082 312 EVK 314
PTZ00117 PTZ00117
malate dehydrogenase; Provisional
20-328 8.71e-33

malate dehydrogenase; Provisional


Pssm-ID: 173409 [Multi-domain]  Cd Length: 319  Bit Score: 124.06  E-value: 8.71e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   20 SQNNAKVAVLGaSGGIGQPLSLLL--KNsplVSELSLFDIAH--TPGVAADLSHIETRAHVKGYIGADQLGDALKGCEVV 95
Cdd:PTZ00117   2 VVKRKKISMIG-AGQIGSTVALLIlqKN---LGDVVLYDVIKgvPQGKALDLKHFSTLVGSNINILGTNNYEDIKDSDVV 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   96 VIPAGVPRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNstipITSEVMKKHGVYNPNKIFGVT-TLDIV 174
Cdd:PTZ00117  78 VITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLD----CMVKVFQEKSGIPSNKICGMAgVLDSS 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  175 RANTFVAELKGLDPARVNVPVVGGHaGITIIPLISQCT----PKVEFPAD------QLSALTGRIQEAGTEVVKAkAGAG 244
Cdd:PTZ00117 154 RFRCNLAEKLGVSPGDVSAVVIGGH-GDLMVPLPRYCTvngiPLSDFVKKgaitekEINEIIKKTRNMGGEIVKL-LKKG 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  245 SATLSMAYAGARFTFSLLdamNGKEGVVECSFVRSEETECK--YFSTPLLLGKNGIEKNLGLgKLSAFEEKLVADAMTEL 322
Cdd:PTZ00117 232 SAFFAPAAAIVAMIEAYL---KDEKRVLVCSVYLNGQYNCKnlFVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKSIESI 307

                 ....*.
gi 47085883  323 KGSIKK 328
Cdd:PTZ00117 308 QELTQK 313
LDH_2 cd05292
A subgroup of L-lactate dehydrogenases; L-lactate dehydrogenases (LDH) are tetrameric enzymes ...
25-327 1.96e-27

A subgroup of L-lactate dehydrogenases; L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133428 [Multi-domain]  Cd Length: 308  Bit Score: 109.12  E-value: 1.96e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  25 KVAVLGAsGGIGQPLSLLLKNSPLVSELSLFDIAH--TPGVAADLSHIETRAHVKGyIGADQLGDaLKGCEVVVIPAGVP 102
Cdd:cd05292   2 KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKakAEGEAMDLAHGTPFVKPVR-IYAGDYAD-CKGADVVVITAGAN 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 103 RKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNstipITSEVMKKHGVYNPNKIFGV-TTLDIVRANTFVA 181
Cdd:cd05292  79 QKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVD----VLTYVAYKLSGLPPNRVIGSgTVLDTARFRYLLG 154
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 182 ELKGLDPARVNVPVVGGH----------AGITIIPLISQC-TPKVEFPADQLSALTGRIQEAGTEVVKAKaGA-----GS 245
Cdd:cd05292 155 EHLGVDPRSVHAYIIGEHgdsevavwssANIGGVPLDEFCkLCGRPFDEEVREEIFEEVRNAAYEIIERK-GAtyyaiGL 233
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 246 ATLSMAYAGAR-----FTFS-LLDAMNGKEGVvecsfvrseeteckYFSTPLLLGKNGIEKNLGLgKLSAFEEKLVADAM 319
Cdd:cd05292 234 ALARIVEAILRdensvLTVSsLLDGQYGIKDV--------------ALSLPCIVGRSGVERVLPP-PLSEEEEEALRASA 298

                ....*...
gi 47085883 320 TELKGSIK 327
Cdd:cd05292 299 EVLKEAIE 306
LDH-like_MDH_nadp cd05294
A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity; The ...
25-300 7.03e-27

A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity; The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133430 [Multi-domain]  Cd Length: 309  Bit Score: 107.88  E-value: 7.03e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  25 KVAVLGASGGIGQPLSLLLKNSPLVSELSLFDIAHT----PGVAADLSH--IETRAHVKGYIGADQlgDALKGCEVVVIP 98
Cdd:cd05294   2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSleklKGLRLDIYDalAAAGIDAEIKISSDL--SDVAGSDIVIIT 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  99 AGVPRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNStipITSEVMKKHGvYNPNKIFGVTT-LDIVRAN 177
Cdd:cd05294  80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDV---MTYKALKESG-FDKNRVFGLGThLDSLRFK 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 178 TFVAELKGLDPARVNVPVVGGHaGITIIPLISQCT---------PKVE-FPADQLsalTGRIQEAGTEVVKAKAGA---- 243
Cdd:cd05294 156 VAIAKHFNVHISEVHTRIIGEH-GDSMVPLISSTSiggipikrfPEYKdFDVEKI---VETVKNAGQNIISLKGGSeygp 231
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 47085883 244 GSATLSMAYAGARFTFSLLDA---MNGK-EGVVECSFvrseeteckyfSTPLLLGKNGIEK 300
Cdd:cd05294 232 ASAISNLVRTIANDERRILTVstyLEGEiDGIRDVCI-----------GVPVKLGKNGIEE 281
MalateDH_bact TIGR01763
malate dehydrogenase, NAD-dependent; This enzyme converts malate into oxaloacetate in the ...
25-327 5.34e-26

malate dehydrogenase, NAD-dependent; This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized, and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. [Energy metabolism, TCA cycle]


Pssm-ID: 273792 [Multi-domain]  Cd Length: 305  Bit Score: 105.34  E-value: 5.34e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883    25 KVAVLGAsGGIGQPLSLLLKNSPLvSELSLFDIAHTPGVAADLSHIETrAHVKGY----IGADQLGDAlKGCEVVVIPAG 100
Cdd:TIGR01763   3 KISVIGA-GFVGATTAFRLAEKEL-ADLVLLDVVEGIPQGKALDMYEA-SPVGGFdtkvTGTNNYADT-ANSDIVVITAG 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   101 VPRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNStipITSEVMKKHGVYNPNKIFGVTTLDIVRANTFV 180
Cdd:TIGR01763  79 LPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDA---MTYVAWQKSGFPKERVIGQAGVLDSARFRTFI 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   181 AELKGLDPARVNVPVVGGHaGITIIPLISQCT----PKVEF-PADQLSALTGRIQEAGTEVVKAkAGAGSATlsmaYAGA 255
Cdd:TIGR01763 156 AMELGVSVQDVTACVLGGH-GDAMVPLVRYSTvagiPVADLiSAERIAEIVERTRKGGGEIVNL-LKQGSAY----YAPA 229
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 47085883   256 RFTFSLLDA-MNGKEGVVECSFVRSEE--TECKYFSTPLLLGKNGIEKNLGLgKLSAFEEKLVADAMTELKGSIK 327
Cdd:TIGR01763 230 ASVVEMVEAiLKDRKRVLPCAAYLDGQygIDGIYVGVPVILGKNGVEHIYEL-KLDQSELALLNKSAKIVDENCK 303
L-LDH-NAD TIGR01771
L-lactate dehydrogenase; This model represents the NAD-dependent L-lactate dehydrogenases from ...
28-323 9.26e-25

L-lactate dehydrogenase; This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]


Pssm-ID: 273796 [Multi-domain]  Cd Length: 299  Bit Score: 101.51  E-value: 9.26e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883    28 VLGAsGGIGQPLSLLLKNSPLVSELSLFDIAH--TPGVAADLSHIETRAHVKGYIGADQLGDaLKGCEVVVIPAGVPRKP 105
Cdd:TIGR01771   1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKdkAEGEAMDLQHAASFLPTPKKIRSGDYSD-CKDADLVVITAGAPQKP 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   106 GMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNStipITSEVMKKHGvYNPNKIFGV-TTLDIVRANTFVAELK 184
Cdd:TIGR01771  79 GETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDI---LTYVAWKLSG-FPKNRVIGSgTVLDTARLRYLLAEKL 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   185 GLDPARVNVPVVGGH----------AGITIIPLISQCTPKVEFPADQLSALTGRIQEAGTEVVKAKagaGSATLSMAYAG 254
Cdd:TIGR01771 155 GVDPQSVHAYIIGEHgdsevpvwssATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRK---GATYYGIGMAV 231
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 47085883   255 ARFTFSLLDAMNgkeGVVECSFVRSEETECK--YFSTPLLLGKNGIEKNLGLgKLSAFEEKLVADAMTELK 323
Cdd:TIGR01771 232 ARIVEAILHDEN---RVLPVSAYLDGEYGIKdvYIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLK 298
HicDH_like cd05291
L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases; ...
25-328 6.81e-23

L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases; L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133427 [Multi-domain]  Cd Length: 306  Bit Score: 96.77  E-value: 6.81e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  25 KVAVLGAsGGIGQPLSLLLKNSPLVSELSLFDI--AHTPGVAADLSHIETRAHVKGYIGADQLGDaLKGCEVVVIPAGVP 102
Cdd:cd05291   2 KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDIneEKAEGEALDLEDALAFLPSPVKIKAGDYSD-CKDADIVVITAGAP 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 103 RKPGMTRDDLFNTNATIVATLV--------DGcarhcpqaMICIISNPVNStipITSEVMKKHGvYNPNKIFGV-TTLDI 173
Cdd:cd05291  80 QKPGETRLDLLEKNAKIMKSIVpkikasgfDG--------IFLVASNPVDV---ITYVVQKLSG-LPKNRVIGTgTSLDT 147
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 174 VRANTFVAELKGLDPARVNVPVVGGHaGITIIPLISQCT----------PKVEFPADQLSALTGRIQEAGTEVVKAKA-- 241
Cdd:cd05291 148 ARLRRALAEKLNVDPRSVHAYVLGEH-GDSQFVAWSTVTvggkplldllKEGKLSELDLDEIEEDVRKAGYEIINGKGat 226
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 242 --GAGSATLSMAYA---GARFTF---SLLDAMNGKEGVvecsfvrseeteckYFSTPLLLGKNGIEKNLGLgKLSAFEEK 313
Cdd:cd05291 227 yyGIATALARIVKAilnDENAILpvsAYLDGEYGEKDV--------------YIGVPAIIGRNGVEEVIEL-DLTEEEQE 291
                       330
                ....*....|....*
gi 47085883 314 LVADAMTELKGSIKK 328
Cdd:cd05291 292 KFEKSADIIKENIKK 306
ldh PRK00066
L-lactate dehydrogenase; Reviewed
25-328 4.57e-22

L-lactate dehydrogenase; Reviewed


Pssm-ID: 178836 [Multi-domain]  Cd Length: 315  Bit Score: 94.57  E-value: 4.57e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   25 KVAVLGAsGGIGQPLSLLLKNSPLVSELSLFDIAH--TPGVAADLSHIETRAH-VKGYIGadQLGDAlKGCEVVVIPAGV 101
Cdd:PRK00066   8 KVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKekAEGDAMDLSHAVPFTSpTKIYAG--DYSDC-KDADLVVITAGA 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  102 PRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNstIpITSEVMKKHGvYNPNKIFGV-TTLDIVRANTFV 180
Cdd:PRK00066  84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVD--I-LTYATWKLSG-FPKERVIGSgTSLDSARFRYML 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  181 AELKGLDPARVNVPVVGGH----------AGITIIPLISQCTPKVEFPADQLSALTGRIQEAGTEVVKAKaGAGSATLSM 250
Cdd:PRK00066 160 SEKLDVDPRSVHAYIIGEHgdtefpvwshANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKK-GATYYGIAM 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  251 AYagARFTFSLLD----------AMNGKEGVVECsfvrseeteckYFSTPLLLGKNGIEKNLGLgKLSAFEEKLVADAMT 320
Cdd:PRK00066 239 AL--ARITKAILNnenavlpvsaYLEGQYGEEDV-----------YIGVPAVVNRNGIREIVEL-PLNDDEKQKFAHSAD 304

                 ....*...
gi 47085883  321 ELKGSIKK 328
Cdd:PRK00066 305 VLKEIMDE 312
MDH cd00704
Malate dehydrogenase; Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid ...
24-251 1.21e-16

Malate dehydrogenase; Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133420 [Multi-domain]  Cd Length: 323  Bit Score: 79.24  E-value: 1.21e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  24 AKVAVLGASGGIGQPLSLLLKNSPLVS-----ELSLFDI----AHTPGVAADLSHIETRaHVKGYIGADQLGDALKGCEV 94
Cdd:cd00704   1 LHVLITGAAGQIGYNLLFLIASGELFGddqpvILHLLDIppamKALEGVVMELQDCAFP-LLKGVVITTDPEEAFKDVDV 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  95 VVIPAGVPRKPGMTRDDLFNTNATIVAT---LVDGCARhcPQAMICIISNPVNSTIPItseVMKKHGVYNPNKIFGVTTL 171
Cdd:cd00704  80 AILVGAFPRKPGMERADLLRKNAKIFKEqgeALNKVAK--PTVKVLVVGNPANTNALI---ALKNAPNLPPKNFTALTRL 154
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 172 DIVRANTFVAELKGLDPARV-NVPVVGGHAGiTIIPLISQCT----PKVEFPADQLS------ALTGRIQEAGTEVVKAK 240
Cdd:cd00704 155 DHNRAKAQVARKLGVRVSDVkNVIIWGNHSN-TQVPDLSNAVvygpGGTEWVLDLLDeewlndEFVKTVQKRGAAIIKKR 233
                       250
                ....*....|...
gi 47085883 241 --AGAGSATLSMA 251
Cdd:cd00704 234 gaSSAASAAKAIA 246
LDH_3 cd05290
A subgroup of L-lactate dehydrogenases; L-lactate dehydrogenases (LDH) are tetrameric enzymes ...
25-302 2.87e-16

A subgroup of L-lactate dehydrogenases; L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133426 [Multi-domain]  Cd Length: 307  Bit Score: 78.14  E-value: 2.87e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  25 KVAVLGAsGGIG-QPLSLLLKnSPLVSELSLFDIahTPGVAA----DLSH-------IETRAHVKGYigadqlgDALKGC 92
Cdd:cd05290   1 KLVVIGA-GHVGsAVLNYALA-LGLFSEIVLIDV--NEGVAEgealDFHHataltysTNTKIRAGDY-------DDCADA 69
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  93 EVVVIPAGVPRKPGMT--RDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNSTIPITSEVMKkhgvYNPNKIFGV-T 169
Cdd:cd05290  70 DIIVITAGPSIDPGNTddRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFD----YPANKVIGTgT 145
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 170 TLDIVRANTFVAELKGLDPARVNVPVVGGHaGITIIPLISQcTPKVEFPADQLSALTGR-----------IQEAGTEVVK 238
Cdd:cd05290 146 MLDTARLRRIVADKYGVDPKNVTGYVLGEH-GSHAFPVWSL-VNIAGLPLDELEALFGKepidkdelleeVVQAAYDVFN 223
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 47085883 239 AKaGAGSATLSMAyagarfTFSLLDAMNGKE-GVVECSFVRSEETECK--YFSTPLLLGKNGIEKNL 302
Cdd:cd05290 224 RK-GWTNAGIAKS------ASRLIKAILLDErSILPVCTLLSGEYGLSdvALSLPTVIGAKGIERVL 283
LDH_1 cd05293
A subgroup of L-lactate dehydrogenases; L-lactate dehydrogenases (LDH) are tetrameric enzymes ...
25-320 2.67e-12

A subgroup of L-lactate dehydrogenases; L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133429 [Multi-domain]  Cd Length: 312  Bit Score: 66.47  E-value: 2.67e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  25 KVAVLGASG-GIGQPLSLLLKNspLVSELSLFDIAH--TPGVAADLSH---IETRAHVKgyigADQLGDALKGCEVVVIP 98
Cdd:cd05293   5 KVTVVGVGQvGMACAISILAKG--LADELVLVDVVEdkLKGEAMDLQHgsaFLKNPKIE----ADKDYSVTANSKVVIVT 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  99 AGVPRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNstipITSEVMKKHGVYNPNKIFGV-TTLDIVRAN 177
Cdd:cd05293  79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSgCNLDSARFR 154
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 178 TFVAELKGLDPARVNVPVVGGH--------AGITI--IPLISqCTPKVEFPADQ--LSALTGRIQEAGTEVVKAKagaGS 245
Cdd:cd05293 155 YLIAERLGVAPSSVHGWIIGEHgdssvpvwSGVNVagVRLQD-LNPDIGTDKDPekWKEVHKQVVDSAYEVIKLK---GY 230
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 246 ATLSMAYAGArftfSLLDAMNGKEGVVEC--SFVRSEETECK--YFSTPLLLGKNGIEKNLGLgKLSAFE-EKLVADAMT 320
Cdd:cd05293 231 TSWAIGLSVA----DLVDAILRNTGRVHSvsTLVKGLHGIEDevFLSLPCILGENGITHVIKQ-PLTEEEqEKLQKSADT 305
MDH_euk_cyt TIGR01758
malate dehydrogenase, NAD-dependent; This model represents the NAD-dependent cytosolic malate ...
25-253 4.06e-10

malate dehydrogenase, NAD-dependent; This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography


Pssm-ID: 130819 [Multi-domain]  Cd Length: 324  Bit Score: 60.24  E-value: 4.06e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883    25 KVAVLGASGGIGQPLS-------LLLKNSPLVseLSLFDIAHT----PGVAADLSHIETRAhVKGYIGADQLGDALKGCE 93
Cdd:TIGR01758   1 RVVVTGAAGQIGYALLpmiargrMLGKDQPII--LHLLDIPPAmkvlEGVVMELMDCAFPL-LDGVVPTHDPAVAFTDVD 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883    94 VVVIPAGVPRKPGMTRDDLFNTNATIVATLVDGCARHC-PQAMICIISNPVNStipiTSEVMKKHGVYNPNKIF-GVTTL 171
Cdd:TIGR01758  78 VAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAkKDCKVLVVGNPANT----NALVLSNYAPSIPPKNFsALTRL 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   172 DIVRANTFVAELKGLDPARV-NVPVVGGHAGiTIIPLISQCTPKV---EFPADQL--------SALTGRIQEAGTEVVKA 239
Cdd:TIGR01758 154 DHNRALAQVAERAGVPVSDVkNVIIWGNHSS-TQYPDVNHATVTKggkQKPVREAikddayldGEFITTVQQRGAAIIRA 232
                         250
                  ....*....|....
gi 47085883   240 KagAGSATLSMAYA 253
Cdd:TIGR01758 233 R--KLSSALSAAKA 244
PLN02602 PLN02602
lactate dehydrogenase
9-298 4.94e-10

lactate dehydrogenase


Pssm-ID: 178212 [Multi-domain]  Cd Length: 350  Bit Score: 59.78  E-value: 4.94e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883    9 TASLVRSLSTSSQNNA-----KVAVLGAsGGIGQPLSLLLKNSPLVSELSLFDIAHTP--GVAADLSHIET---RAHvkg 78
Cdd:PLN02602  18 SQAFFKPIHNSSPPSPtrrhtKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKlrGEMLDLQHAAAflpRTK--- 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   79 yIGADQLGDALKGCEVVVIPAGVPRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNstipITSEVMKKHG 158
Cdd:PLN02602  94 -ILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVD----VLTYVAWKLS 168
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  159 VYNPNKIFGV-TTLDIVRANTFVAELKGLDPARVNVPVVGGH-------------AGITIIPLISQctPKVEFPADQLSA 224
Cdd:PLN02602 169 GFPANRVIGSgTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHgdssvalwssvsvGGVPVLSFLEK--QQIAYEKETLEE 246
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 47085883  225 LTGRIQEAGTEVVKAKagaGSATLSMAYAGARFTFSLLDAMNGKEGVVECS--FVRSEETECkYFSTPLLLGKNGI 298
Cdd:PLN02602 247 IHRAVVDSAYEVIKLK---GYTSWAIGYSVASLVRSLLRDQRRIHPVSVLAkgFHGIDEGDV-FLSLPAQLGRNGV 318
MDH_cytoplasmic_cytosolic cd01336
Cytoplasmic and cytosolic Malate dehydrogenases; MDH is one of the key enzymes in the citric ...
25-253 3.52e-09

Cytoplasmic and cytosolic Malate dehydrogenases; MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133421 [Multi-domain]  Cd Length: 325  Bit Score: 57.25  E-value: 3.52e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  25 KVAVLGASGGIGQPLSLLL-------KNSPLvsELSLFDIAHT----PGVAADLshiETRAH--VKGYIGADQLGDALKG 91
Cdd:cd01336   4 RVLVTGAAGQIAYSLLPMIakgdvfgPDQPV--ILHLLDIPPAlkalEGVVMEL---QDCAFplLKSVVATTDPEEAFKD 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  92 CEVVVIPAGVPRKPGMTRDDLFNTNATIVATLVDGCARHC-PQAMICIISNPVNSTIPITSEVMKKhgvYNPNKIFGVTT 170
Cdd:cd01336  79 VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAkKNVKVLVVGNPANTNALILLKYAPS---IPKENFTALTR 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 171 LDIVRANTFVAELKGLDPARV-NVPVVGGHAGiTIIPLISQCT--------PKVEFPADQlSALTG----RIQEAGTEVV 237
Cdd:cd01336 156 LDHNRAKSQIALKLGVPVSDVkNVIIWGNHSS-TQYPDVNHATvelngkgkPAREAVKDD-AWLNGefisTVQKRGAAVI 233
                       250
                ....*....|....*.
gi 47085883 238 KAKaGAGSAtLSMAYA 253
Cdd:cd01336 234 KAR-KLSSA-MSAAKA 247
MDH_chloroplast-like cd01338
Chloroplast-like malate dehydrogenases; MDH is one of the key enzymes in the citric acid cycle, ...
25-246 3.73e-08

Chloroplast-like malate dehydrogenases; MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the chloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.


Pssm-ID: 133423 [Multi-domain]  Cd Length: 322  Bit Score: 54.13  E-value: 3.73e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  25 KVAVLGASGGIGQPL-------SLLLKNSPLvsELSLFDIAHT----PGVAADLshiETRAH--VKGYIGADQLGDALKG 91
Cdd:cd01338   4 RVAVTGAAGQIGYSLlfriasgEMFGPDQPV--ILQLLELPQAlkalEGVAMEL---EDCAFplLAEIVITDDPNVAFKD 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  92 CEVVVIPAGVPRKPGMTRDDLFNTNATIVAT----LVDGCARHCpqaMICIISNPVNSTIPItseVMKKHGVYNPNKIFG 167
Cdd:cd01338  79 ADWALLVGAKPRGPGMERADLLKANGKIFTAqgkaLNDVASRDV---KVLVVGNPCNTNALI---AMKNAPDIPPDNFTA 152
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883 168 VTTLDIVRANTFVAELKGLDPARV-NVPVVGGHAGiTIIPLISQCT----PKVEFPADQ---LSALTGRIQEAGTEVVKA 239
Cdd:cd01338 153 MTRLDHNRAKSQLAKKAGVPVTDVkNMVIWGNHSP-TQYPDFTNATiggkPAAEVINDRawlEDEFIPTVQKRGAAIIKA 231

                ....*..
gi 47085883 240 KaGAGSA 246
Cdd:cd01338 232 R-GASSA 237
LDH_protist TIGR01756
lactate dehydrogenase; This model represents a family of protist lactate dehydrogenases which ...
75-212 6.52e-08

lactate dehydrogenase; This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.


Pssm-ID: 130817  Cd Length: 313  Bit Score: 53.35  E-value: 6.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883    75 HVKGYIGADQLGDALKGCEVVVIPAGVPRKPGMTRDDLFNTNATIVATLVDGCARHC-PQAMICIISNPVNSTIPITsev 153
Cdd:TIGR01756  44 NLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAkPTVKVLVIGNPVNTNCLVA--- 120
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 47085883   154 MKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVVGGHAGITIIPLISQCT 212
Cdd:TIGR01756 121 MLHAPKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAESMVADLTHAE 179
PLN00135 PLN00135
malate dehydrogenase
76-253 1.38e-07

malate dehydrogenase


Pssm-ID: 177744 [Multi-domain]  Cd Length: 309  Bit Score: 52.47  E-value: 1.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   76 VKGYIGADQLGDALKGCEVVVIPAGVPRKPGMTRDDLFNTNATIVATLVDGCARHC-PQAMICIISNPVNSTIPITSEVM 154
Cdd:PLN00135  43 LKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAaPDCKVLVVANPANTNALILKEFA 122
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  155 KKHGVYNpnkIFGVTTLDIVRANTFVAELKGLDPARV-NVPVVGGHAGiTIIPLISQC---TPKVEFPADQLSA----LT 226
Cdd:PLN00135 123 PSIPEKN---ITCLTRLDHNRALGQISERLGVPVSDVkNVIIWGNHSS-TQYPDVNHAtvkTPSGEKPVRELVAddawLN 198
                        170       180       190
                 ....*....|....*....|....*....|.
gi 47085883  227 GR----IQEAGTEVVKAKagAGSATLSMAYA 253
Cdd:PLN00135 199 GEfittVQQRGAAIIKAR--KLSSALSAASS 227
PRK05442 PRK05442
malate dehydrogenase; Provisional
25-246 2.13e-06

malate dehydrogenase; Provisional


Pssm-ID: 235468 [Multi-domain]  Cd Length: 326  Bit Score: 48.64  E-value: 2.13e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   25 KVAVLGASGGIGQPL-------SLLLKNSPLvsELSLFDIAHT----PGVAADLshiETRAH--VKGYIGADQLGDALKG 91
Cdd:PRK05442   6 RVAVTGAAGQIGYSLlfriasgDMLGKDQPV--ILQLLEIPPAlkalEGVVMEL---DDCAFplLAGVVITDDPNVAFKD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883   92 CEVVVIPAGVPRKPGMTRDDLFNTNATIVAT----LVDGCARHcpqAMICIISNPVNSTIPITsevMKKHGVYNPNKIFG 167
Cdd:PRK05442  81 ADVALLVGARPRGPGMERKDLLEANGAIFTAqgkaLNEVAARD---VKVLVVGNPANTNALIA---MKNAPDLPAENFTA 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  168 VTTLDIVRANTFVAELKGLDPARV-NVPVVGGHAGiTIIPLISQCT----PKVEFPADQ---LSALTGRIQEAGTEVVKA 239
Cdd:PRK05442 155 MTRLDHNRALSQLAAKAGVPVADIkKMTVWGNHSA-TQYPDFRHATidgkPAAEVINDQawlEDTFIPTVQKRGAAIIEA 233

                 ....*..
gi 47085883  240 KaGAGSA 246
Cdd:PRK05442 234 R-GASSA 239
WcaG COG0451
Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis];
25-136 1.75e-05

Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440220 [Multi-domain]  Cd Length: 295  Bit Score: 45.74  E-value: 1.75e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883  25 KVAVLGASGGIGQPLSLLLKNSPLvsELSLFDIAHTPgvAADLSHIETRAHVKG-YIGADQLGDALKGCEVVVIPAGVPR 103
Cdd:COG0451   1 RILVTGGAGFIGSHLARRLLARGH--EVVGLDRSPPG--AANLAALPGVEFVRGdLRDPEALAAALAGVDAVVHLAAPAG 76
                        90       100       110
                ....*....|....*....|....*....|...
gi 47085883 104 KPGMTRDDLFNTNATIVATLVDGCARHCPQAMI 136
Cdd:COG0451  77 VGEEDPDETLEVNVEGTLNLLEAARAAGVKRFV 109
3Beta_HSD pfam01073
3-beta hydroxysteroid dehydrogenase/isomerase family; The enzyme 3 beta-hydroxysteroid ...
27-130 8.09e-04

3-beta hydroxysteroid dehydrogenase/isomerase family; The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerization of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones.


Pssm-ID: 366449 [Multi-domain]  Cd Length: 279  Bit Score: 40.43  E-value: 8.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085883    27 AVLGASGGIGQPL-SLLLKNSPLvSELSLFDIAHTPGVAADLSHIETRAHVKGYI-GADQLGDALKGCEVVVIPAGVPRK 104
Cdd:pfam01073   1 VVTGGGGFLGRHIiKLLVREGEL-KEVRVFDLRESPELLEDFSKSNVIKYIQGDVtDKDDLDNALEGVDVVIHTASAVDV 79
                          90       100
                  ....*....|....*....|....*....
gi 47085883   105 PGMTRDDLF---NTNATivATLVDGCARH 130
Cdd:pfam01073  80 FGKYTFDEImkvNVKGT--QNVLEACVKA 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH