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Conserved domains on  [gi|13994261|ref|NP_114109|]
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large ribosomal subunit protein bL32m precursor [Homo sapiens]

Protein Classification

bL32 family ribosomal protein( domain architecture ID 10484870)

bL32 family ribosomal protein such as bacterial 50S ribosomal protein L32, mammalian mitochondrial 39S ribosomal protein L32, and fungal mitochondrial 54S ribosomal protein L32

Gene Ontology:  GO:0006412|GO:0003735|GO:0015934
PubMed:  24524803
SCOP:  4000508

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L32p pfam01783
Ribosomal L32p protein family;
79-126 1.28e-06

Ribosomal L32p protein family;


:

Pssm-ID: 426430  Cd Length: 56  Bit Score: 43.74  E-value: 1.28e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 13994261    79 AAPKNRRTIEVNRCRRRNPQklIKVKNnIDVCPECGHLKQKHVLCAYC 126
Cdd:pfam01783   1 AVPKRKTSKSRRRKRRAHWK--LKAPN-LVECPNCGELKLPHRVCPSC 45
 
Name Accession Description Interval E-value
Ribosomal_L32p pfam01783
Ribosomal L32p protein family;
79-126 1.28e-06

Ribosomal L32p protein family;


Pssm-ID: 426430  Cd Length: 56  Bit Score: 43.74  E-value: 1.28e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 13994261    79 AAPKNRRTIEVNRCRRRNPQklIKVKNnIDVCPECGHLKQKHVLCAYC 126
Cdd:pfam01783   1 AVPKRKTSKSRRRKRRAHWK--LKAPN-LVECPNCGELKLPHRVCPSC 45
RpmF COG0333
Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 ...
 79-126 5.48e-03

Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440102  Cd Length: 56  Bit Score: 33.92  E-value: 5.48e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 13994261  79 AAPKNRRTIeVNRCRRRNPQKLikVKNNIDVCPECGHLKQKHVLCAYC 126
Cdd:COG0333   1 AVPKRKTSK-SRRRKRRSHDKL--TAPALVVCPNCGEPKLPHRVCPSC 45
 
Name Accession Description Interval E-value
Ribosomal_L32p pfam01783
Ribosomal L32p protein family;
79-126 1.28e-06

Ribosomal L32p protein family;


Pssm-ID: 426430  Cd Length: 56  Bit Score: 43.74  E-value: 1.28e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 13994261    79 AAPKNRRTIEVNRCRRRNPQklIKVKNnIDVCPECGHLKQKHVLCAYC 126
Cdd:pfam01783   1 AVPKRKTSKSRRRKRRAHWK--LKAPN-LVECPNCGELKLPHRVCPSC 45
RpmF COG0333
Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 ...
 79-126 5.48e-03

Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440102  Cd Length: 56  Bit Score: 33.92  E-value: 5.48e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 13994261  79 AAPKNRRTIeVNRCRRRNPQKLikVKNNIDVCPECGHLKQKHVLCAYC 126
Cdd:COG0333   1 AVPKRKTSK-SRRRKRRSHDKL--TAPALVVCPNCGEPKLPHRVCPSC 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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