Y-box-binding protein 2 isoform 1 [Mus musculus]
cold shock domain-containing protein( domain architecture ID 10448154)
cold shock domain-containing protein similar to mammalian Y-box-binding proteins, which are DNA- and RNA-binding proteins involved in various processes, such as translational repression, RNA stabilization, mRNA splicing, DNA repair and transcription regulation
List of domain hits
Name | Accession | Description | Interval | E-value | ||
CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
95-164 | 8.52e-27 | ||
'Cold-shock' DNA-binding domain; : Pssm-ID: 278729 Cd Length: 66 Bit Score: 100.78 E-value: 8.52e-27
|
||||||
Name | Accession | Description | Interval | E-value | ||
CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
95-164 | 8.52e-27 | ||
'Cold-shock' DNA-binding domain; Pssm-ID: 278729 Cd Length: 66 Bit Score: 100.78 E-value: 8.52e-27
|
||||||
CSP_CDS | cd04458 | Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in ... |
97-163 | 5.27e-24 | ||
Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription. Pssm-ID: 239905 Cd Length: 65 Bit Score: 93.41 E-value: 5.27e-24
|
||||||
CspC | COG1278 | Cold shock protein, CspA family [Transcription]; |
97-162 | 6.91e-20 | ||
Cold shock protein, CspA family [Transcription]; Pssm-ID: 440889 Cd Length: 67 Bit Score: 82.16 E-value: 6.91e-20
|
||||||
CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
97-164 | 3.62e-16 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 71.86 E-value: 3.62e-16
|
||||||
cspE | PRK09507 | cold shock-like protein CspE; |
94-162 | 6.12e-15 | ||
cold shock-like protein CspE; Pssm-ID: 169931 Cd Length: 69 Bit Score: 68.91 E-value: 6.12e-15
|
||||||
Name | Accession | Description | Interval | E-value | ||
CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
95-164 | 8.52e-27 | ||
'Cold-shock' DNA-binding domain; Pssm-ID: 278729 Cd Length: 66 Bit Score: 100.78 E-value: 8.52e-27
|
||||||
CSP_CDS | cd04458 | Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in ... |
97-163 | 5.27e-24 | ||
Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription. Pssm-ID: 239905 Cd Length: 65 Bit Score: 93.41 E-value: 5.27e-24
|
||||||
CspC | COG1278 | Cold shock protein, CspA family [Transcription]; |
97-162 | 6.91e-20 | ||
Cold shock protein, CspA family [Transcription]; Pssm-ID: 440889 Cd Length: 67 Bit Score: 82.16 E-value: 6.91e-20
|
||||||
CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
97-164 | 3.62e-16 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 71.86 E-value: 3.62e-16
|
||||||
cspE | PRK09507 | cold shock-like protein CspE; |
94-162 | 6.12e-15 | ||
cold shock-like protein CspE; Pssm-ID: 169931 Cd Length: 69 Bit Score: 68.91 E-value: 6.12e-15
|
||||||
PRK09890 | PRK09890 | cold shock protein CspG; Provisional |
94-161 | 6.26e-14 | ||
cold shock protein CspG; Provisional Pssm-ID: 77467 Cd Length: 70 Bit Score: 65.94 E-value: 6.26e-14
|
||||||
PRK10354 | PRK10354 | RNA chaperone/antiterminator CspA; |
94-162 | 9.89e-14 | ||
RNA chaperone/antiterminator CspA; Pssm-ID: 182402 Cd Length: 70 Bit Score: 65.38 E-value: 9.89e-14
|
||||||
PRK10943 | PRK10943 | cold shock-like protein CspC; Provisional |
94-162 | 7.73e-12 | ||
cold shock-like protein CspC; Provisional Pssm-ID: 170841 Cd Length: 69 Bit Score: 60.08 E-value: 7.73e-12
|
||||||
PRK09937 | PRK09937 | cold shock-like protein CspD; |
97-170 | 2.46e-09 | ||
cold shock-like protein CspD; Pssm-ID: 77494 Cd Length: 74 Bit Score: 53.20 E-value: 2.46e-09
|
||||||
PRK14998 | PRK14998 | cold shock-like protein CspD; Provisional |
96-159 | 6.57e-08 | ||
cold shock-like protein CspD; Provisional Pssm-ID: 184960 Cd Length: 73 Bit Score: 49.28 E-value: 6.57e-08
|
||||||
PRK15463 | PRK15463 | cold shock-like protein CspF; Provisional |
97-161 | 6.60e-05 | ||
cold shock-like protein CspF; Provisional Pssm-ID: 185360 Cd Length: 70 Bit Score: 40.65 E-value: 6.60e-05
|
||||||
Blast search parameters | ||||
|