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Conserved domains on  [gi|1387629604|ref|NP_001350007|]
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nucleolar protein 11 isoform 3 [Mus musculus]

Protein Classification

NUC205 domain-containing protein( domain architecture ID 10548316)

NUC205 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NUC205 pfam08168
NUC205 domain; This domain is found in a novel family of nucleolar proteins.
131-174 1.54e-18

NUC205 domain; This domain is found in a novel family of nucleolar proteins.


:

Pssm-ID: 429856  Cd Length: 44  Bit Score: 79.07  E-value: 1.54e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1387629604 131 EKSVKPNFTARVDGKFISLVSLSSDGCIYETLIPIYSSDTEQNQ 174
Cdd:pfam08168   1 EKSFQKSFTASVDRKFISLMSLSSDGCIYESLIPISPKDQEENQ 44
 
Name Accession Description Interval E-value
NUC205 pfam08168
NUC205 domain; This domain is found in a novel family of nucleolar proteins.
131-174 1.54e-18

NUC205 domain; This domain is found in a novel family of nucleolar proteins.


Pssm-ID: 429856  Cd Length: 44  Bit Score: 79.07  E-value: 1.54e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1387629604 131 EKSVKPNFTARVDGKFISLVSLSSDGCIYETLIPIYSSDTEQNQ 174
Cdd:pfam08168   1 EKSFQKSFTASVDRKFISLMSLSSDGCIYESLIPISPKDQEENQ 44
 
Name Accession Description Interval E-value
NUC205 pfam08168
NUC205 domain; This domain is found in a novel family of nucleolar proteins.
131-174 1.54e-18

NUC205 domain; This domain is found in a novel family of nucleolar proteins.


Pssm-ID: 429856  Cd Length: 44  Bit Score: 79.07  E-value: 1.54e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1387629604 131 EKSVKPNFTARVDGKFISLVSLSSDGCIYETLIPIYSSDTEQNQ 174
Cdd:pfam08168   1 EKSFQKSFTASVDRKFISLMSLSSDGCIYESLIPISPKDQEENQ 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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