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Conserved domains on  [gi|968121898|ref|NP_001304980|]
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NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial isoform 2 precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NDUS4 super family cl04760
NADH dehydrogenase ubiquinone Fe-S protein 4; This entry represents NADH dehydrogenase ...
 76-117 9.86e-24

NADH dehydrogenase ubiquinone Fe-S protein 4; This entry represents NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, an accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), initially identified in Neurospora crassa as a 21 kDa protein. It is believed that members of this family are not to be involved in catalysis.


The actual alignment was detected with superfamily member pfam04800:

Pssm-ID: 461433  Cd Length: 93  Bit Score: 87.16  E-value: 9.86e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 968121898   76 KVRIFVPARNNMQSGVNNTKKWKMEFDTRE-RWENPLMGWAST 117
Cdd:pfam04800   1 TVRIYKPAKNAMQSGTAKTKKWVLEFDPLEpRWENPLMGWTSS 43
 
Name Accession Description Interval E-value
NDUS4 pfam04800
NADH dehydrogenase ubiquinone Fe-S protein 4; This entry represents NADH dehydrogenase ...
 76-117 9.86e-24

NADH dehydrogenase ubiquinone Fe-S protein 4; This entry represents NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, an accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), initially identified in Neurospora crassa as a 21 kDa protein. It is believed that members of this family are not to be involved in catalysis.


Pssm-ID: 461433  Cd Length: 93  Bit Score: 87.16  E-value: 9.86e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 968121898   76 KVRIFVPARNNMQSGVNNTKKWKMEFDTRE-RWENPLMGWAST 117
Cdd:pfam04800   1 TVRIYKPAKNAMQSGTAKTKKWVLEFDPLEpRWENPLMGWTSS 43
 
Name Accession Description Interval E-value
NDUS4 pfam04800
NADH dehydrogenase ubiquinone Fe-S protein 4; This entry represents NADH dehydrogenase ...
 76-117 9.86e-24

NADH dehydrogenase ubiquinone Fe-S protein 4; This entry represents NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, an accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), initially identified in Neurospora crassa as a 21 kDa protein. It is believed that members of this family are not to be involved in catalysis.


Pssm-ID: 461433  Cd Length: 93  Bit Score: 87.16  E-value: 9.86e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 968121898   76 KVRIFVPARNNMQSGVNNTKKWKMEFDTRE-RWENPLMGWAST 117
Cdd:pfam04800   1 TVRIYKPAKNAMQSGTAKTKKWVLEFDPLEpRWENPLMGWTSS 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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