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Conserved domains on  [gi|756398253|ref|NP_001291890|]
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coiled-coil domain-containing protein 92 isoform 2 [Homo sapiens]

Protein Classification

Mplasa_alph_rch and CCDC92 domain-containing protein( domain architecture ID 10633014)

Mplasa_alph_rch and CCDC92 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CCDC92 pfam14916
Coiled-coil domain of unknown function; This domain family is found in eukaryotes, and is ...
 7-60 6.08e-19

Coiled-coil domain of unknown function; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. The function is not known and the proteins carry no other domains.


:

Pssm-ID: 464372 [Multi-domain]  Cd Length: 57  Bit Score: 78.87  E-value: 6.08e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 756398253    7 ENQLHSAQKNLLFLQREHASTLKGLHSEIRRLQQHCTDLTYELTVKSSEQTGDG 60
Cdd:pfam14916   1 EQRLQSLEKSILFLQQQHAATLKGLHKEIERLQKENKDLTFKLVMSEGESSQQG 54
Mplasa_alph_rch super family cl37461
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 4-152 6.62e-05

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


The actual alignment was detected with superfamily member TIGR04523:

Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 44.63  E-value: 6.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253    4 TNLENQLHSAQKNLLFLQREHAS-TLKGLHSEIRRLQQHCTDLTYELT------------VKSSEQT-GDGTSKSSELKK 69
Cdd:TIGR04523 284 KELEKQLNQLKSEISDLNNQKEQdWNKELKSELKNQEKKLEEIQNQISqnnkiisqlneqISQLKKElTNSESENSEKQR 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253   70 RCEELEAQLKVKENENAELLKELEQKNAMITVLENTIKEREK---------KYLE-ELKAKSHKLTLLSSELEQRASTIA 139
Cdd:TIGR04523 364 ELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKlnqqkdeqiKKLQqEKELLEKEIERLKETIIKNNSEIK 443

                         170
                  ....*....|...
gi 756398253  140 YLTSQLHAAKKKL 152
Cdd:TIGR04523 444 DLTNQDSVKELII 456
 
Name Accession Description Interval E-value
CCDC92 pfam14916
Coiled-coil domain of unknown function; This domain family is found in eukaryotes, and is ...
 7-60 6.08e-19

Coiled-coil domain of unknown function; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. The function is not known and the proteins carry no other domains.


Pssm-ID: 464372 [Multi-domain]  Cd Length: 57  Bit Score: 78.87  E-value: 6.08e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 756398253    7 ENQLHSAQKNLLFLQREHASTLKGLHSEIRRLQQHCTDLTYELTVKSSEQTGDG 60
Cdd:pfam14916   1 EQRLQSLEKSILFLQQQHAATLKGLHKEIERLQKENKDLTFKLVMSEGESSQQG 54
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 4-152 6.62e-05

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 44.63  E-value: 6.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253    4 TNLENQLHSAQKNLLFLQREHAS-TLKGLHSEIRRLQQHCTDLTYELT------------VKSSEQT-GDGTSKSSELKK 69
Cdd:TIGR04523 284 KELEKQLNQLKSEISDLNNQKEQdWNKELKSELKNQEKKLEEIQNQISqnnkiisqlneqISQLKKElTNSESENSEKQR 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253   70 RCEELEAQLKVKENENAELLKELEQKNAMITVLENTIKEREK---------KYLE-ELKAKSHKLTLLSSELEQRASTIA 139
Cdd:TIGR04523 364 ELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKlnqqkdeqiKKLQqEKELLEKEIERLKETIIKNNSEIK 443

                         170
                  ....*....|...
gi 756398253  140 YLTSQLHAAKKKL 152
Cdd:TIGR04523 444 DLTNQDSVKELII 456
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
62-152 5.65e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 41.59  E-value: 5.65e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253  62 SKSSELKKRCEELEAQLKVKENENAELLKELEQKN-AMITVLENTIKERE---KKYLE------ELKAKSHKLTLLSSEL 131
Cdd:PRK03918 549 EKLEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEpfyNEYLElkdaekELEREEKELKKLEEEL 628

                         90       100
                 ....*....|....*....|.
gi 756398253 132 EQRASTIAYLTSQLHAAKKKL 152
Cdd:PRK03918 629 DKAFEELAETEKRLEELRKEL 649
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 2-152 1.74e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.92  E-value: 1.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253   2 AATNLENQLHSAQKNLLFLQREHASTLKGLHSEIRRLQQHCTDLtyeltVKSSEQTGDGTSKSSELKKRCEELEAQLKVK 81
Cdd:COG1196  275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL-----EELEEELAELEEELEELEEELEELEEELEEA 349

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 756398253  82 ENENAELLKELEQKNAMITVLENTIKEREKKYLEELKAKSHKLTllssELEQRASTIAYLTSQLHAAKKKL 152
Cdd:COG1196  350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR----AAAELAAQLEELEEAEEALLERL 416
 
Name Accession Description Interval E-value
CCDC92 pfam14916
Coiled-coil domain of unknown function; This domain family is found in eukaryotes, and is ...
 7-60 6.08e-19

Coiled-coil domain of unknown function; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. The function is not known and the proteins carry no other domains.


Pssm-ID: 464372 [Multi-domain]  Cd Length: 57  Bit Score: 78.87  E-value: 6.08e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 756398253    7 ENQLHSAQKNLLFLQREHASTLKGLHSEIRRLQQHCTDLTYELTVKSSEQTGDG 60
Cdd:pfam14916   1 EQRLQSLEKSILFLQQQHAATLKGLHKEIERLQKENKDLTFKLVMSEGESSQQG 54
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 4-152 6.62e-05

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 44.63  E-value: 6.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253    4 TNLENQLHSAQKNLLFLQREHAS-TLKGLHSEIRRLQQHCTDLTYELT------------VKSSEQT-GDGTSKSSELKK 69
Cdd:TIGR04523 284 KELEKQLNQLKSEISDLNNQKEQdWNKELKSELKNQEKKLEEIQNQISqnnkiisqlneqISQLKKElTNSESENSEKQR 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253   70 RCEELEAQLKVKENENAELLKELEQKNAMITVLENTIKEREK---------KYLE-ELKAKSHKLTLLSSELEQRASTIA 139
Cdd:TIGR04523 364 ELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKlnqqkdeqiKKLQqEKELLEKEIERLKETIIKNNSEIK 443

                         170
                  ....*....|...
gi 756398253  140 YLTSQLHAAKKKL 152
Cdd:TIGR04523 444 DLTNQDSVKELII 456
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 6-151 4.94e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 41.54  E-value: 4.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253    6 LENQLHSAQKNLLFLQREhastLKGLHSEIRRLQQHCTDLtyeltvksSEQTGDGTSKSSELKKRCEELEAQLKVKENE- 84
Cdd:TIGR04523 473 LSRSINKIKQNLEQKQKE----LKSKEKELKKLNEEKKEL--------EEKVKDLTKKISSLKEKIEKLESEKKEKESKi 540

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253   85 ---------------NAELLKELEQKNAMITVLENTIKEREKKYLE---ELKAKSHKLTLLSSELEQRASTIAYLTSQLH 146
Cdd:TIGR04523 541 sdledelnkddfelkKENLEKEIDEKNKEIEELKQTQKSLKKKQEEkqeLIDQKEKEKKDLIKEIEEKEKKISSLEKELE 620


                  ....*
gi 756398253  147 AAKKK 151
Cdd:TIGR04523 621 KAKKE 625
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
62-152 5.65e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 41.59  E-value: 5.65e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253  62 SKSSELKKRCEELEAQLKVKENENAELLKELEQKN-AMITVLENTIKERE---KKYLE------ELKAKSHKLTLLSSEL 131
Cdd:PRK03918 549 EKLEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEpfyNEYLElkdaekELEREEKELKKLEEEL 628

                         90       100
                 ....*....|....*....|.
gi 756398253 132 EQRASTIAYLTSQLHAAKKKL 152
Cdd:PRK03918 629 DKAFEELAETEKRLEELRKEL 649
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 7-152 9.39e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.81  E-value: 9.39e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253     7 ENQLHSAQKNL----------------LFLQREHASTLKGLHSEIRRLQQHCTDLTYELTVKSSEQTgdgTSKSSELKKR 70
Cdd:TIGR02168  178 ERKLERTRENLdrledilnelerqlksLERQAEKAERYKELKAELRELELALLVLRLEELREELEEL---QEELKEAEEE 254

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253    71 CEELEAQLKVKEnenaellKELEQKNAMITVLENTIKEREKKYLE---ELKAKSHKLTLLSSELEQRASTIAYLTSQLHA 147
Cdd:TIGR02168  255 LEELTAELQELE-------EKLEELRLEVSELEEEIEELQKELYAlanEISRLEQQKQILRERLANLERQLEELEAQLEE 327


                   ....*
gi 756398253   148 AKKKL 152
Cdd:TIGR02168  328 LESKL 332
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 2-152 1.74e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.92  E-value: 1.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253   2 AATNLENQLHSAQKNLLFLQREHASTLKGLHSEIRRLQQHCTDLtyeltVKSSEQTGDGTSKSSELKKRCEELEAQLKVK 81
Cdd:COG1196  275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL-----EELEEELAELEEELEELEEELEELEEELEEA 349

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 756398253  82 ENENAELLKELEQKNAMITVLENTIKEREKKYLEELKAKSHKLTllssELEQRASTIAYLTSQLHAAKKKL 152
Cdd:COG1196  350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR----AAAELAAQLEELEEAEEALLERL 416
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 4-138 2.28e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 39.62  E-value: 2.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253    4 TNLENQLhsaqKNLLFLQREHASTLKGLHSEIRRLQQHCTDLTYELTVKSSEQTGDGTSKS---------------SELK 68
Cdd:TIGR04523 506 KELEEKV----KDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEideknkeieelkqtqKSLK 581

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253   69 KRCEELEAQLKVKENENAELLKELEQKNAMITVLENTIKEREKKYlEELKAKSHKLTLLSSELEQRASTI 138
Cdd:TIGR04523 582 KKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN-EKLSSIIKNIKSKKNKLKQEVKQI 650
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 2-139 3.17e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 39.27  E-value: 3.17e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253     2 AATNLENQLHSAQKNLLFLQREHA---STLKGLHSEIRRLQQHCTDLTYELTVKSsEQTGDGTSKSSELKKRCEELEAQL 78
Cdd:TIGR02168  797 ELKALREALDELRAELTLLNEEAAnlrERLESLERRIAATERRLEDLEEQIEELS-EDIESLAAEIEELEELIEELESEL 875

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 756398253    79 KVKENENAELLKELEQKNAMITVLENTIKEREKK------YLEELKAKSHKLTLLSSELEQRASTIA 139
Cdd:TIGR02168  876 EALLNERASLEEALALLRSELEELSEELRELESKrselrrELEELREKLAQLELRLEGLEVRIDNLQ 942
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
6-152 3.54e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 38.89  E-value: 3.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253   6 LENQLHSAQKNLLFLQREhastLKGLHSEIRRLQQHCTDlTYELTVKSSEQTGDGTSKSSELKKRCEELEAQLKVKENEN 85
Cdd:PRK03918 554 LKKKLAELEKKLDELEEE----LAELLKELEELGFESVE-ELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEEL 628

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 756398253  86 AELLKELEQKNAMITVLENTIKEREKKY-LEELKAKSHKLTLLSSELEQRASTIAYLTSQLHAAKKKL 152
Cdd:PRK03918 629 DKAFEELAETEKRLEELRKELEELEKKYsEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTL 696
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 62-152 5.21e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 38.51  E-value: 5.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253    62 SKSSELKKRCEELEAQLKVKENENAELLKELEQKNAMitvlENTIKEREKKYLEELKAKSHKLTLLSSELEQRASTIAYL 141
Cdd:TIGR02169  695 SELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE----EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL 770

                           90
                   ....*....|.
gi 756398253   142 TSQLHAAKKKL 152
Cdd:TIGR02169  771 EEDLHKLEEAL 781
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 66-152 6.04e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 38.38  E-value: 6.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253  66 ELKKRCEELEAQLKVKENENAELLKELEQKNAMITVLENTIKEREkkylEELKAKSHKLTLLSSELEQRASTIAYLTSQL 145
Cdd:COG1196  236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELE----LELEEAQAEEYELLAELARLEQDIARLEERR 311


                 ....*..
gi 756398253 146 HAAKKKL 152
Cdd:COG1196  312 RELEERL 318
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
9-148 6.49e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 38.36  E-value: 6.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253    9 QLHSAQKNLLFL--QREHASTLKGLHSEIRRLQQHCTDLTYELTVKSSEQtgdGTSKSSELKKRCEELEAQLKVKENENA 86
Cdd:COG4913   236 DLERAHEALEDAreQIELLEPIRELAERYAAARERLAELEYLRAALRLWF---AQRRLELLEAELEELRAELARLEAELE 312

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 756398253   87 ELLKELEQKNAMITVLENTIKEREKKYLEELKAKSHKLTLLSSELEQRASTIAYLTSQLHAA 148
Cdd:COG4913   313 RLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLP 374
PRK12704 PRK12704
phosphodiesterase; Provisional
 66-155 8.54e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 37.84  E-value: 8.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756398253  66 ELKKRCEELEAQLKVKENENAELLKELEQK-------NAMITVLENTIKEREKKY---LEELKAKSHKLTLLSSELEQRA 135
Cdd:PRK12704  65 EIHKLRNEFEKELRERRNELQKLEKRLLQKeenldrkLELLEKREEELEKKEKELeqkQQELEKKEEELEELIEEQLQEL 144

                         90       100
                 ....*....|....*....|
gi 756398253 136 STIAYLTSQlhAAKKKLMSS 155
Cdd:PRK12704 145 ERISGLTAE--EAKEILLEK 162
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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