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Conserved domains on  [gi|545477960|ref|NP_001269880|]
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COP9 signalosome complex subunit 7b isoform d [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CSN7a_helixI pfam18392
COP9 signalosome complex subunit 7a helix I domain; This is The C-terminal helix I domain ...
 111-160 3.65e-22

COP9 signalosome complex subunit 7a helix I domain; This is The C-terminal helix I domain found in COP9 signalosome complex subunit 7a. The helix from CSN7 (helix I) contacts CSN6 helices I and II at the base of the bundle, nearest the PCI ring.


:

Pssm-ID: 465740  Cd Length: 50  Bit Score: 85.04  E-value: 3.65e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 545477960  111 DINNIVKTLHEWCDGCEAVLLGIEQQVLRANQYKENHNRTQQQVEAEVTN 160
Cdd:pfam18392   1 DIGVIINTLQEWCDSCEAVLSCIETQVNRANAEKNKHIKHKEKIEQEIAN 50
PINT smart00088
motif in proteasome subunits, Int-6, Nip-1 and TRIP-15; Also called the PCI (Proteasome, COP9, ...
 46-122 2.25e-10

motif in proteasome subunits, Int-6, Nip-1 and TRIP-15; Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.


:

Pssm-ID: 214509 [Multi-domain]  Cd Length: 88  Bit Score: 54.94  E-value: 2.25e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 545477960    46 LLELANVQECIPYSVLLKDLEMRNLrELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRdiRKKDINNIVKTLHEW 122
Cdd:smart00088  15 LLQLSEPYSSISLSDLAKLLGLSVP-EVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPR--RSEPLAQFAETLKKL 88
 
Name Accession Description Interval E-value
CSN7a_helixI pfam18392
COP9 signalosome complex subunit 7a helix I domain; This is The C-terminal helix I domain ...
 111-160 3.65e-22

COP9 signalosome complex subunit 7a helix I domain; This is The C-terminal helix I domain found in COP9 signalosome complex subunit 7a. The helix from CSN7 (helix I) contacts CSN6 helices I and II at the base of the bundle, nearest the PCI ring.


Pssm-ID: 465740  Cd Length: 50  Bit Score: 85.04  E-value: 3.65e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 545477960  111 DINNIVKTLHEWCDGCEAVLLGIEQQVLRANQYKENHNRTQQQVEAEVTN 160
Cdd:pfam18392   1 DIGVIINTLQEWCDSCEAVLSCIETQVNRANAEKNKHIKHKEKIEQEIAN 50
PINT smart00088
motif in proteasome subunits, Int-6, Nip-1 and TRIP-15; Also called the PCI (Proteasome, COP9, ...
 46-122 2.25e-10

motif in proteasome subunits, Int-6, Nip-1 and TRIP-15; Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.


Pssm-ID: 214509 [Multi-domain]  Cd Length: 88  Bit Score: 54.94  E-value: 2.25e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 545477960    46 LLELANVQECIPYSVLLKDLEMRNLrELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRdiRKKDINNIVKTLHEW 122
Cdd:smart00088  15 LLQLSEPYSSISLSDLAKLLGLSVP-EVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPR--RSEPLAQFAETLKKL 88
PCI pfam01399
PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and ...
 46-99 2.08e-04

PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).


Pssm-ID: 460195  Cd Length: 105  Bit Score: 39.12  E-value: 2.08e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 545477960   46 LLELANVQECIPYSVLLKDLEMRNlRELEDLIIEAVYTDIIQGKLDQRNQLLEV 99
Cdd:pfam01399  51 LRQLSKPYSSISLSDLAKLLGLSV-DEVEKILAKLIRDGRIRAKIDQVNGIVVF 103
ALDH_F14-YMR110C cd07135
Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins; Aldehyde ...
 62-122 3.05e-03

Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins; Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD.


Pssm-ID: 143453 [Multi-domain]  Cd Length: 436  Bit Score: 37.97  E-value: 3.05e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545477960  62 LKDLEMR--NLREL-------EDLIIEAVYTDIiqGKLDQRNQLLEVDFCIGrdirkkDINNIVKTLHEW 122
Cdd:cd07135   23 TKDLEYRlwQLKQLywavkdnEEAIVEALKKDL--GRPPFETLLTEVSGVKN------DILHMLKNLKKW 84
 
Name Accession Description Interval E-value
CSN7a_helixI pfam18392
COP9 signalosome complex subunit 7a helix I domain; This is The C-terminal helix I domain ...
 111-160 3.65e-22

COP9 signalosome complex subunit 7a helix I domain; This is The C-terminal helix I domain found in COP9 signalosome complex subunit 7a. The helix from CSN7 (helix I) contacts CSN6 helices I and II at the base of the bundle, nearest the PCI ring.


Pssm-ID: 465740  Cd Length: 50  Bit Score: 85.04  E-value: 3.65e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 545477960  111 DINNIVKTLHEWCDGCEAVLLGIEQQVLRANQYKENHNRTQQQVEAEVTN 160
Cdd:pfam18392   1 DIGVIINTLQEWCDSCEAVLSCIETQVNRANAEKNKHIKHKEKIEQEIAN 50
PINT smart00088
motif in proteasome subunits, Int-6, Nip-1 and TRIP-15; Also called the PCI (Proteasome, COP9, ...
 46-122 2.25e-10

motif in proteasome subunits, Int-6, Nip-1 and TRIP-15; Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.


Pssm-ID: 214509 [Multi-domain]  Cd Length: 88  Bit Score: 54.94  E-value: 2.25e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 545477960    46 LLELANVQECIPYSVLLKDLEMRNLrELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRdiRKKDINNIVKTLHEW 122
Cdd:smart00088  15 LLQLSEPYSSISLSDLAKLLGLSVP-EVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPR--RSEPLAQFAETLKKL 88
PCI pfam01399
PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and ...
 46-99 2.08e-04

PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).


Pssm-ID: 460195  Cd Length: 105  Bit Score: 39.12  E-value: 2.08e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 545477960   46 LLELANVQECIPYSVLLKDLEMRNlRELEDLIIEAVYTDIIQGKLDQRNQLLEV 99
Cdd:pfam01399  51 LRQLSKPYSSISLSDLAKLLGLSV-DEVEKILAKLIRDGRIRAKIDQVNGIVVF 103
ALDH_F14-YMR110C cd07135
Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins; Aldehyde ...
 62-122 3.05e-03

Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins; Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD.


Pssm-ID: 143453 [Multi-domain]  Cd Length: 436  Bit Score: 37.97  E-value: 3.05e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545477960  62 LKDLEMR--NLREL-------EDLIIEAVYTDIiqGKLDQRNQLLEVDFCIGrdirkkDINNIVKTLHEW 122
Cdd:cd07135   23 TKDLEYRlwQLKQLywavkdnEEAIVEALKKDL--GRPPFETLLTEVSGVKN------DILHMLKNLKKW 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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