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Conserved domains on  [gi|322812163|ref|NP_001190191|]
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NADH dehydrogenase [ubiquinone] 1 subunit C2, isoform 2 isoform 3 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NDUF_C2 super family cl05723
NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several ...
 10-54 5.41e-19

NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins (EC:1.6.5.3).


The actual alignment was detected with superfamily member pfam06374:

Pssm-ID: 428908  Cd Length: 109  Bit Score: 74.26  E-value: 5.41e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 322812163   10 LRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIAT 54
Cdd:pfam06374   1 LELLPDEGRSLPPPLLDDWNPLYGGFLGFGAALLVNWGRRRPVLS 45
 
Name Accession Description Interval E-value
NDUF_C2 pfam06374
NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several ...
 10-54 5.41e-19

NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins (EC:1.6.5.3).


Pssm-ID: 428908  Cd Length: 109  Bit Score: 74.26  E-value: 5.41e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 322812163   10 LRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIAT 54
Cdd:pfam06374   1 LELLPDEGRSLPPPLLDDWNPLYGGFLGFGAALLVNWGRRRPVLS 45
 
Name Accession Description Interval E-value
NDUF_C2 pfam06374
NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several ...
 10-54 5.41e-19

NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins (EC:1.6.5.3).


Pssm-ID: 428908  Cd Length: 109  Bit Score: 74.26  E-value: 5.41e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 322812163   10 LRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIAT 54
Cdd:pfam06374   1 LELLPDEGRSLPPPLLDDWNPLYGGFLGFGAALLVNWGRRRPVLS 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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