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Conserved domains on  [gi|189181734|ref|NP_001121183|]
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transmembrane protein 14B isoform b [Homo sapiens]

Protein Classification

TMEM14 family protein( domain architecture ID 10508392)

TMEM14 family protein contains four hydrophobic alpha-helical regions, three of which are membrane-spanning, similar to Arabidopsis thaliana fatty acid export proteins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tmemb_14 pfam03647
Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.
 14-69 1.72e-04

Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.


:

Pssm-ID: 461004  Cd Length: 89  Bit Score: 36.32  E-value: 1.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181734  14 FGFGYTALVVSGGIVGYVKT---------------------------------AATSVTFVGVMGMRSYYYGKFMPVGLI 60
Cdd:pfam03647  1 LGIPYGALLAVGGIMGYARAgsvpsliaglgfgallllggylslnapyglelaLGASAVLAGVMGPRFIKTRKFMPAGLL 80


                 ....*....
gi 189181734  61 AGASLLMAA 69
Cdd:pfam03647 81 ALLSLLMLA 89
 
Name Accession Description Interval E-value
Tmemb_14 pfam03647
Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.
 14-69 1.72e-04

Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.


Pssm-ID: 461004  Cd Length: 89  Bit Score: 36.32  E-value: 1.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181734  14 FGFGYTALVVSGGIVGYVKT---------------------------------AATSVTFVGVMGMRSYYYGKFMPVGLI 60
Cdd:pfam03647  1 LGIPYGALLAVGGIMGYARAgsvpsliaglgfgallllggylslnapyglelaLGASAVLAGVMGPRFIKTRKFMPAGLL 80


                 ....*....
gi 189181734  61 AGASLLMAA 69
Cdd:pfam03647 81 ALLSLLMLA 89
 
Name Accession Description Interval E-value
Tmemb_14 pfam03647
Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.
 14-69 1.72e-04

Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.


Pssm-ID: 461004  Cd Length: 89  Bit Score: 36.32  E-value: 1.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181734  14 FGFGYTALVVSGGIVGYVKT---------------------------------AATSVTFVGVMGMRSYYYGKFMPVGLI 60
Cdd:pfam03647  1 LGIPYGALLAVGGIMGYARAgsvpsliaglgfgallllggylslnapyglelaLGASAVLAGVMGPRFIKTRKFMPAGLL 80


                 ....*....
gi 189181734  61 AGASLLMAA 69
Cdd:pfam03647 81 ALLSLLMLA 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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