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Conserved domains on  [gi|20269055|emb|CAC84708|]
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aux/IAA protein [Populus tremula x Populus tremuloides]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
AUX_IAA super family cl03528
AUX/IAA family; Transcription of the AUX/IAA family of genes is rapidly induced by the plant ...
36-172 2.39e-40

AUX/IAA family; Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.


The actual alignment was detected with superfamily member pfam02309:

Pssm-ID: 334886  Cd Length: 184  Bit Score: 134.25  E-value: 2.39e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20269055    36 TDLRLGLSISASQQENPSTPSDQQLSD-------------WPPIKPL--NL----SKALESEENECSSAT---FFVKVYM 93
Cdd:pfam02309   2 TELRLGLPGSGSPERQSADESKLAASAvsgakrgfsqvvgWPPIRSFrkNTlatsSSKNSKEEAEGKAGEgkaLFVKVSM 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20269055    94 EGIPIGRKLNLLAHDGYHDLIQTLDQMFNTSIlwpemdiehSGQC------------------------HVLTYEDKEGD 149
Cdd:pfam02309  82 DGAPYLRKVDLKAYDSYQELSSALEKMFSCFT---------IGQCgshgmpgrdglsesklsdlldgseYVLTYEDKDGD 152
                         170       180
                  ....*....|....*....|...
gi 20269055   150 WLIVGDVPWEMFLPSVRRLKITR 172
Cdd:pfam02309 153 WMLVGDVPWEMFVSSCKRLRIMK 175
 
Name Accession Description Interval E-value
AUX_IAA pfam02309
AUX/IAA family; Transcription of the AUX/IAA family of genes is rapidly induced by the plant ...
36-172 2.39e-40

AUX/IAA family; Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.


Pssm-ID: 334886  Cd Length: 184  Bit Score: 134.25  E-value: 2.39e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20269055    36 TDLRLGLSISASQQENPSTPSDQQLSD-------------WPPIKPL--NL----SKALESEENECSSAT---FFVKVYM 93
Cdd:pfam02309   2 TELRLGLPGSGSPERQSADESKLAASAvsgakrgfsqvvgWPPIRSFrkNTlatsSSKNSKEEAEGKAGEgkaLFVKVSM 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20269055    94 EGIPIGRKLNLLAHDGYHDLIQTLDQMFNTSIlwpemdiehSGQC------------------------HVLTYEDKEGD 149
Cdd:pfam02309  82 DGAPYLRKVDLKAYDSYQELSSALEKMFSCFT---------IGQCgshgmpgrdglsesklsdlldgseYVLTYEDKDGD 152
                         170       180
                  ....*....|....*....|...
gi 20269055   150 WLIVGDVPWEMFLPSVRRLKITR 172
Cdd:pfam02309 153 WMLVGDVPWEMFVSSCKRLRIMK 175
 
Name Accession Description Interval E-value
AUX_IAA pfam02309
AUX/IAA family; Transcription of the AUX/IAA family of genes is rapidly induced by the plant ...
36-172 2.39e-40

AUX/IAA family; Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.


Pssm-ID: 334886  Cd Length: 184  Bit Score: 134.25  E-value: 2.39e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20269055    36 TDLRLGLSISASQQENPSTPSDQQLSD-------------WPPIKPL--NL----SKALESEENECSSAT---FFVKVYM 93
Cdd:pfam02309   2 TELRLGLPGSGSPERQSADESKLAASAvsgakrgfsqvvgWPPIRSFrkNTlatsSSKNSKEEAEGKAGEgkaLFVKVSM 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20269055    94 EGIPIGRKLNLLAHDGYHDLIQTLDQMFNTSIlwpemdiehSGQC------------------------HVLTYEDKEGD 149
Cdd:pfam02309  82 DGAPYLRKVDLKAYDSYQELSSALEKMFSCFT---------IGQCgshgmpgrdglsesklsdlldgseYVLTYEDKDGD 152
                         170       180
                  ....*....|....*....|...
gi 20269055   150 WLIVGDVPWEMFLPSVRRLKITR 172
Cdd:pfam02309 153 WMLVGDVPWEMFVSSCKRLRIMK 175
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.17
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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