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Conserved domains on  [gi|29603358|emb|CAA86458|]
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Cyclin-dependent kinase 5 activator 1 [Caenorhabditis elegans]

Protein Classification

CDK5_activator domain-containing protein (domain architecture ID 10505501)

CDK5_activator domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CDK5_activator pfam03261
Cyclin-dependent kinase 5 activator protein;
7-355 4.04e-159

Cyclin-dependent kinase 5 activator protein;


:

Pssm-ID: 308730  Cd Length: 348  Bit Score: 449.34  E-value: 4.04e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29603358     7 SPLPHHHRTQTTSVCNHLFSPGDGGPTFAPQRDSNTSSRsssnAKESVLMQGWNWSKRNIQpVMSRRSLPKSGSSSEATS 86
Cdd:pfam03261   1 GPLNNLHRTSTDSVNNHLDSPGNENPTIASEKSSIEKSL----KKHSLFINALSWKKLSTS-HNKKKLDNKKNKSANLPS 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29603358    87 SKSSDSLVSFTRNVSTSTS-SQYGKISISLDRNQN------------YKSVPRPSDTTTIIPnyyslrEEFRRGLQINTR 153
Cdd:pfam03261  76 ACFKDQLLDFTFNSSTSSDkNQNIQLSCSRIENHNqqncncantptvYSQVPSASKTTTIQH------ELFRSLLQVNNR 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29603358   154 QDLVNNNLAS--NDLSVIGSPKHVPR---PRSVLRDDNANCdISPiaeqeNVPSEASTSELLRGLGIFISNNC-DVSDFD 227
Cdd:pfam03261 150 NSLSNHNKLSqkQPLSLSLPPKHVPQqlqPSSIQRSSNAQV-TPR-----KTVIQASTSELLKCLGIFLHNRCyRLKDFD 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29603358   228 PAHLVTWLRSVDRSLLLQGWQDIAFINPANLVFIFLLVRDVLPDERHlihTLEELHAWILSCLYVSYSYMGNEISYPLKP 307
Cdd:pfam03261 224 AGDAVMWLRAVDRSLLLQGWQDVAFINPANVVFVYMLVRDLVSGEEH---KESELQASVLTCLYLSYSYMGNEISYPLKP 300
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 29603358   308 FLIGNDRNTFWNRCVAMVTSHSRQMLLLNSSSTFFSEVFTDLKHCSSS 355
Cdd:pfam03261 301 FLVEDSKEKFWDRCLAIVNRLSRKMLRINAEPGFFTEVFTDLKSCGQS 348
 
Name Accession Description Interval E-value
CDK5_activator pfam03261
Cyclin-dependent kinase 5 activator protein;
7-355 4.04e-159

Cyclin-dependent kinase 5 activator protein;


Pssm-ID: 308730  Cd Length: 348  Bit Score: 449.34  E-value: 4.04e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29603358     7 SPLPHHHRTQTTSVCNHLFSPGDGGPTFAPQRDSNTSSRsssnAKESVLMQGWNWSKRNIQpVMSRRSLPKSGSSSEATS 86
Cdd:pfam03261   1 GPLNNLHRTSTDSVNNHLDSPGNENPTIASEKSSIEKSL----KKHSLFINALSWKKLSTS-HNKKKLDNKKNKSANLPS 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29603358    87 SKSSDSLVSFTRNVSTSTS-SQYGKISISLDRNQN------------YKSVPRPSDTTTIIPnyyslrEEFRRGLQINTR 153
Cdd:pfam03261  76 ACFKDQLLDFTFNSSTSSDkNQNIQLSCSRIENHNqqncncantptvYSQVPSASKTTTIQH------ELFRSLLQVNNR 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29603358   154 QDLVNNNLAS--NDLSVIGSPKHVPR---PRSVLRDDNANCdISPiaeqeNVPSEASTSELLRGLGIFISNNC-DVSDFD 227
Cdd:pfam03261 150 NSLSNHNKLSqkQPLSLSLPPKHVPQqlqPSSIQRSSNAQV-TPR-----KTVIQASTSELLKCLGIFLHNRCyRLKDFD 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29603358   228 PAHLVTWLRSVDRSLLLQGWQDIAFINPANLVFIFLLVRDVLPDERHlihTLEELHAWILSCLYVSYSYMGNEISYPLKP 307
Cdd:pfam03261 224 AGDAVMWLRAVDRSLLLQGWQDVAFINPANVVFVYMLVRDLVSGEEH---KESELQASVLTCLYLSYSYMGNEISYPLKP 300
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 29603358   308 FLIGNDRNTFWNRCVAMVTSHSRQMLLLNSSSTFFSEVFTDLKHCSSS 355
Cdd:pfam03261 301 FLVEDSKEKFWDRCLAIVNRLSRKMLRINAEPGFFTEVFTDLKSCGQS 348
 
Name Accession Description Interval E-value
CDK5_activator pfam03261
Cyclin-dependent kinase 5 activator protein;
7-355 4.04e-159

Cyclin-dependent kinase 5 activator protein;


Pssm-ID: 308730  Cd Length: 348  Bit Score: 449.34  E-value: 4.04e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29603358     7 SPLPHHHRTQTTSVCNHLFSPGDGGPTFAPQRDSNTSSRsssnAKESVLMQGWNWSKRNIQpVMSRRSLPKSGSSSEATS 86
Cdd:pfam03261   1 GPLNNLHRTSTDSVNNHLDSPGNENPTIASEKSSIEKSL----KKHSLFINALSWKKLSTS-HNKKKLDNKKNKSANLPS 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29603358    87 SKSSDSLVSFTRNVSTSTS-SQYGKISISLDRNQN------------YKSVPRPSDTTTIIPnyyslrEEFRRGLQINTR 153
Cdd:pfam03261  76 ACFKDQLLDFTFNSSTSSDkNQNIQLSCSRIENHNqqncncantptvYSQVPSASKTTTIQH------ELFRSLLQVNNR 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29603358   154 QDLVNNNLAS--NDLSVIGSPKHVPR---PRSVLRDDNANCdISPiaeqeNVPSEASTSELLRGLGIFISNNC-DVSDFD 227
Cdd:pfam03261 150 NSLSNHNKLSqkQPLSLSLPPKHVPQqlqPSSIQRSSNAQV-TPR-----KTVIQASTSELLKCLGIFLHNRCyRLKDFD 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29603358   228 PAHLVTWLRSVDRSLLLQGWQDIAFINPANLVFIFLLVRDVLPDERHlihTLEELHAWILSCLYVSYSYMGNEISYPLKP 307
Cdd:pfam03261 224 AGDAVMWLRAVDRSLLLQGWQDVAFINPANVVFVYMLVRDLVSGEEH---KESELQASVLTCLYLSYSYMGNEISYPLKP 300
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 29603358   308 FLIGNDRNTFWNRCVAMVTSHSRQMLLLNSSSTFFSEVFTDLKHCSSS 355
Cdd:pfam03261 301 FLVEDSKEKFWDRCLAIVNRLSRKMLRINAEPGFFTEVFTDLKSCGQS 348
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.17
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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