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Conserved domains on  [gi|490593739|ref|WP_004458759|]
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Protein Classification

OmpA family protein (domain architecture ID 10163224)

OmpA family membrane protein may act as a porin with low permeability that allows slow penetration of small solutes, similar to outer membrane protein A (OmpA) and outer membrane porin F (OprF) as well as the flagellar protein MotY which may act as a stator

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
79-189 6.19e-22

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 85.30  E-value: 6.19e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  79 FSYKKADVNPGdfsewSKANVSVIKEGLGKLPdNYALEITGHTDAIGPEQAegakkgNIFYSELRANAVKQALIKQGIPA 158
Cdd:cd07185    6 FDFGSAELTPE-----AKPLLDKLAEVLKKNP-DAKIRIEGHTDSRGSDAY------NQELSERRAEAVADYLVSKGVDA 73
                         90       100       110
                 ....*....|....*....|....*....|...
gi 490593739 159 NRIISKGAGSSEPVS--GLDAKDAKNRRVTFRF 189
Cdd:cd07185   74 SRITAVGYGESRPIAsnDTEEGRAKNRRVEIVI 106
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
79-189 6.19e-22

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 85.30  E-value: 6.19e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  79 FSYKKADVNPGdfsewSKANVSVIKEGLGKLPdNYALEITGHTDAIGPEQAegakkgNIFYSELRANAVKQALIKQGIPA 158
Cdd:cd07185    6 FDFGSAELTPE-----AKPLLDKLAEVLKKNP-DAKIRIEGHTDSRGSDAY------NQELSERRAEAVADYLVSKGVDA 73
                         90       100       110
                 ....*....|....*....|....*....|...
gi 490593739 159 NRIISKGAGSSEPVS--GLDAKDAKNRRVTFRF 189
Cdd:cd07185   74 SRITAVGYGESRPIAsnDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
21-189 7.78e-18

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225439 [Multi-domain]  Cd Length: 190  Bit Score: 77.20  E-value: 7.78e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  21 CSSAEKKEESAAPEPSAQEQSASAANRSVDVNSPEAIADSLNEKLKDFRYPDGITRP-----GFSYKKADVNPGdfsewS 95
Cdd:COG2885   24 CASKLNGDSAALIGAGPGALGGAGAGVPLDVAEAELRAKEAGDGPAERRKARDIILNlpndvLFDFDSSVLKPK-----A 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  96 KANVSVIKEGLGKLPDnYALEITGHTDAIGPEQAegakkgNIFYSELRANAVKQALIKQGIPANRIISKGAGSSEPVSGL 175
Cdd:COG2885   99 QATLDELAKYLKKNPI-TRILVEGHTDSTGSDEY------NQALSERRAEAVADYLVSQGVVADRISTVGYGEEKPIASN 171
                        170
                 ....*....|....*.
gi 490593739 176 DAKD--AKNRRVTFRF 189
Cdd:COG2885  172 ATEEgrAKNRRVEIKI 187
motB PRK08457
flagellar motor protein MotB; Reviewed
16-194 2.64e-10

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 57.80  E-value: 2.64e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  16 FSFTLCSSAEKKEESAAPEPSAQE--------QSASAANRSVDVNSPEAIADSLNEKLKD--FRYPDGITrpgFSYKKAD 85
Cdd:PRK08457  56 FDYTAKPEVKQPVKVIPPDSGDAEeemdelksLKASQNTQQETIERRKGEGGALDQIDNGiaLKLPSKLL---FENGSAE 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  86 VNPGDFSEWSKANVSVIKeglgKLPDNYALEITGHTDAIGPEQAEGakKGNIFYSELRANAVKQALIKQGIPANRIISKG 165
Cdd:PRK08457 133 IINADMMDYLKRIAKIIT----KLPKQVKINVRGYTDNSPLNKSRY--KDHYELAAARAYNVMKVLIQYGINPNRLSFSS 206
                        170       180       190
                 ....*....|....*....|....*....|.
gi 490593739 166 AGSSEPVSGLD--AKDAKNRRVTFRFATSAP 194
Cdd:PRK08457 207 YGSNNPIAPNDslENRLKNNRVEIFFKVDAN 237
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
115-184 5.42e-10

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 279081  Cd Length: 93  Bit Score: 53.89  E-value: 5.42e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  115 LEITGHTDAIGPEqaegakKGNIFYSELRANAVKQALIKQGIPANRIISKGAGSSEPVSGLDAKDAKNRR 184
Cdd:pfam00691  30 ILVEGHTDTVGSA------EYNWELSLRRAEAVARYLVNFGVPPSRISVVGFGEERPITDNNTPEGRARN 93
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
112-187 1.03e-08

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307  Cd Length: 104  Bit Score: 50.64  E-value: 1.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  112 NYALEITGHTDaigpEQaeGAKKGNIFYSELRANAVKQALIKQGIPANRI--ISKG------AGSSEpvsgldAKDAKNR 183
Cdd:TIGR02802  31 SVRVTIEGHTD----ER--GTREYNLALGERRANAVKDYLQSKGVSASQIetVSYGkekpaaLGHDE------AAWAKNR 98

                  ....
gi 490593739  184 RVTF 187
Cdd:TIGR02802  99 RAVL 102
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
79-189 6.19e-22

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 85.30  E-value: 6.19e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  79 FSYKKADVNPGdfsewSKANVSVIKEGLGKLPdNYALEITGHTDAIGPEQAegakkgNIFYSELRANAVKQALIKQGIPA 158
Cdd:cd07185    6 FDFGSAELTPE-----AKPLLDKLAEVLKKNP-DAKIRIEGHTDSRGSDAY------NQELSERRAEAVADYLVSKGVDA 73
                         90       100       110
                 ....*....|....*....|....*....|...
gi 490593739 159 NRIISKGAGSSEPVS--GLDAKDAKNRRVTFRF 189
Cdd:cd07185   74 SRITAVGYGESRPIAsnDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
21-189 7.78e-18

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225439 [Multi-domain]  Cd Length: 190  Bit Score: 77.20  E-value: 7.78e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  21 CSSAEKKEESAAPEPSAQEQSASAANRSVDVNSPEAIADSLNEKLKDFRYPDGITRP-----GFSYKKADVNPGdfsewS 95
Cdd:COG2885   24 CASKLNGDSAALIGAGPGALGGAGAGVPLDVAEAELRAKEAGDGPAERRKARDIILNlpndvLFDFDSSVLKPK-----A 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  96 KANVSVIKEGLGKLPDnYALEITGHTDAIGPEQAegakkgNIFYSELRANAVKQALIKQGIPANRIISKGAGSSEPVSGL 175
Cdd:COG2885   99 QATLDELAKYLKKNPI-TRILVEGHTDSTGSDEY------NQALSERRAEAVADYLVSQGVVADRISTVGYGEEKPIASN 171
                        170
                 ....*....|....*.
gi 490593739 176 DAKD--AKNRRVTFRF 189
Cdd:COG2885  172 ATEEgrAKNRRVEIKI 187
motB PRK08457
flagellar motor protein MotB; Reviewed
16-194 2.64e-10

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 57.80  E-value: 2.64e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  16 FSFTLCSSAEKKEESAAPEPSAQE--------QSASAANRSVDVNSPEAIADSLNEKLKD--FRYPDGITrpgFSYKKAD 85
Cdd:PRK08457  56 FDYTAKPEVKQPVKVIPPDSGDAEeemdelksLKASQNTQQETIERRKGEGGALDQIDNGiaLKLPSKLL---FENGSAE 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  86 VNPGDFSEWSKANVSVIKeglgKLPDNYALEITGHTDAIGPEQAEGakKGNIFYSELRANAVKQALIKQGIPANRIISKG 165
Cdd:PRK08457 133 IINADMMDYLKRIAKIIT----KLPKQVKINVRGYTDNSPLNKSRY--KDHYELAAARAYNVMKVLIQYGINPNRLSFSS 206
                        170       180       190
                 ....*....|....*....|....*....|.
gi 490593739 166 AGSSEPVSGLD--AKDAKNRRVTFRFATSAP 194
Cdd:PRK08457 207 YGSNNPIAPNDslENRLKNNRVEIFFKVDAN 237
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
115-184 5.42e-10

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 279081  Cd Length: 93  Bit Score: 53.89  E-value: 5.42e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  115 LEITGHTDAIGPEqaegakKGNIFYSELRANAVKQALIKQGIPANRIISKGAGSSEPVSGLDAKDAKNRR 184
Cdd:pfam00691  30 ILVEGHTDTVGSA------EYNWELSLRRAEAVARYLVNFGVPPSRISVVGFGEERPITDNNTPEGRARN 93
PRK10510 PRK10510
putative outer membrane lipoprotein; Provisional
111-186 1.49e-09

putative outer membrane lipoprotein; Provisional


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 55.27  E-value: 1.49e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490593739 111 DNYALEITGHTDAIGpeqaegAKKGNIFYSELRANAVKQALIKQGIPANRIISKGAGSSEPVS--GLDAKDAKNRRVT 186
Cdd:PRK10510 142 PKTAVNVVGYTDSTG------SHDLNMRLSQQRADSVASALITQGVDASRIRTQGMGPANPIAsnSTAEGKAQNRRVE 213
MotB COG1360
Flagellar motor protein MotB [Cell motility];
14-185 7.90e-09

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 224279 [Multi-domain]  Cd Length: 244  Bit Score: 53.54  E-value: 7.90e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  14 IAFSFTLCSSAE--KKEESAAPEPSAQEQSASAANRSVDVNSP-EAIADSLNEKLKDFRYPDGI----TRPG---FSYKK 83
Cdd:COG1360   54 IAFSGAPGSASEggKSMQQVKEKELAEELNVGEAIEKKELSEKlGDLAKELESKPKDIELEHQLgvddVEEGlviSISDS 133
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  84 ADVNPGDfSEWSKANVSVIKEGLGKLPD--NYALEITGHTDAIgPEQAEGakKGNIFYSELRANAVKQALIKQG-IPANR 160
Cdd:COG1360  134 LMFASGS-AVVQPEFRDLLLKIAKLLADipNGNIRIEGHTDNV-PIKGSF--YSNWELSAARAQSVVRVLINGGlVEAKR 209
                        170       180
                 ....*....|....*....|....*..
gi 490593739 161 IISKGAGSSEPVS--GLDAKDAKNRRV 185
Cdd:COG1360  210 LSVVGYADTRPLAdnDTAEGRAKNRRV 236
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
112-187 1.03e-08

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307  Cd Length: 104  Bit Score: 50.64  E-value: 1.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  112 NYALEITGHTDaigpEQaeGAKKGNIFYSELRANAVKQALIKQGIPANRI--ISKG------AGSSEpvsgldAKDAKNR 183
Cdd:TIGR02802  31 SVRVTIEGHTD----ER--GTREYNLALGERRANAVKDYLQSKGVSASQIetVSYGkekpaaLGHDE------AAWAKNR 98

                  ....
gi 490593739  184 RVTF 187
Cdd:TIGR02802  99 RAVL 102
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
117-185 2.52e-08

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533  Cd Length: 137  Bit Score: 50.38  E-value: 2.52e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490593739  117 ITGHTDAIGPEQAEgaKKGNIFYSELRANAVKQALIKQGIPANRIISKGAGSSEPVSGLDAKD--AKNRRV 185
Cdd:TIGR03350  65 VVGHTDNVPIRTAR--FPSNWHLSEARAKAVADVLAQAGGPAGRVRAEGRGDSEPIASNATAAgrARNRRV 133
PRK09039 PRK09039
hypothetical protein; Validated
84-189 5.00e-08

hypothetical protein; Validated


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 51.51  E-value: 5.00e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  84 ADVNPGDFSEWSKAnVSVIKEGLGKLPD--NYALEITGHTDAIgPEQAEGAKKGNIFYSELRANAVKQALIKQGIPANRI 161
Cdd:PRK09039 233 AELNPEGQAEIAKL-AAALIELAKEIPPeiNWVLRVDGHTDNV-PLSGTGRFRDNWELSSARAISVVKFLIALGVPADRL 310
                         90       100       110
                 ....*....|....*....|....*....|
gi 490593739 162 ISKGAGSSEPVSGLDAKDA--KNRRVTFRF 189
Cdd:PRK09039 311 AAAGFGEFQPLDPGDTPEAraRNRRIELKL 340
PRK08126 PRK08126
hypothetical protein; Provisional
117-185 2.40e-07

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 49.69  E-value: 2.40e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490593739 117 ITGHTDAIGPEQAEGAKkgNIFYSELRANAVKQALIKQGIPANRIISKGAGSSEPV--SGLDAKDAKNRRV 185
Cdd:PRK08126 358 VTGHTDNQPIRSAQFAS--NLVLSEKRAAQVAQMLQSAGVPASRLEAVGKGDAQPVadNRTPQGRAQNRRV 426
PRK10808 PRK10808
outer membrane protein A; Reviewed
119-174 3.87e-07

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 48.92  E-value: 3.87e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 490593739 119 GHTDAIGPEQAegakkgNIFYSELRANAVKQALIKQGIPANRIISKGAGSSEPVSG 174
Cdd:PRK10808 264 GYTDRIGSDAY------NQGLSEKRAQSVVDYLVSKGIPADKISARGMGKSNPVTG 313
pdsO TIGR03789
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine ...
114-188 1.06e-06

proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274783 [Multi-domain]  Cd Length: 243  Bit Score: 47.11  E-value: 1.06e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490593739  114 ALEITGHTDAIGPEQAegakkgNIFYSELRANAVKQALIKQGIPANRIISKGAGSSEPVSglDAKDAKN----RRVTFR 188
Cdd:TIGR03789 172 KLDLSGYADRRGDSQY------NQALSEQRVLEVRSYLIKQGVDEARLTTQAFGESAPLK--DEQESESdffdRRVTLT 242
PRK10802 PRK10802
peptidoglycan-associated outer membrane lipoprotein; Provisional
79-184 7.55e-05

peptidoglycan-associated outer membrane lipoprotein; Provisional


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 41.39  E-value: 7.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490593739  79 FSYKKADVNPgDFSEWSKANVSVIKEGlgklpDNYALEITGHTDAIG-PEQaegakkgNIFYSELRANAVKQALIKQGIP 157
Cdd:PRK10802  73 FDLDKYDIRS-DFAQMLDAHANFLRSN-----PSYKVTVEGHADERGtPEY-------NIALGERRANAVKMYLQGKGVS 139
                         90       100
                 ....*....|....*....|....*....
gi 490593739 158 ANRIISKGAGSSEP-VSGLD-AKDAKNRR 184
Cdd:PRK10802 140 ADQISIVSYGKEKPaVLGHDeAAYAKNRR 168
PRK09040 PRK09040
hypothetical protein; Provisional
140-185 1.05e-04

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 41.16  E-value: 1.05e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 490593739 140 SELRANAVKQALIKQGIPANRIISKGAGSSEPVSGLDAKD--AKNRRV 185
Cdd:PRK09040 150 SAQRALTVTRALIDAGVPASSVFAAAFGSEQPVASNADDEgrAKNRRV 197
motB PRK08944
flagellar motor protein MotB; Reviewed
115-185 1.12e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 38.45  E-value: 1.12e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490593739 115 LEITGHTDAIgPEQAEgakkgnIFYSE-----LRANAVKQALIK-QGIPANRIISKGAGSSEPVSGLDAKD--AKNRRV 185
Cdd:PRK08944 212 ITVSGHTDNV-PISSE------LYRSNwdlssARAVAVAHELLKvKGFDPQRLKVVGMADTQPLVPNDTAEnrARNRRV 283
motB PRK09041
flagellar motor protein MotB; Validated
117-185 7.35e-03

flagellar motor protein MotB; Validated


Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 36.07  E-value: 7.35e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490593739 117 ITGHTDAIgpeQAEGAKKGnifYS--EL---RANAVKQALIKQGIPAN---RIIskGAGSSEPVSGLDAKDAKNRRV 185
Cdd:PRK09041 196 LSGHTDAT---PYANGEKG---YSnwELsadRANASRRELVAGGMDEGkvlRVV--GLASTMLLDKKDPLNPVNRRI 264
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.17
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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