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Conserved domains on  [gi|41055911|ref|NP_957471|]
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programmed cell death protein 5 [Danio rerio]

Protein Classification

similar to DNA-binding protein DDB_G0278111 (domain architecture ID 10487993)

protein similar to DNA-binding protein DDB_G0278111

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
dsDNA_bind pfam01984
Double-stranded DNA-binding domain; This domain is believed to bind double-stranded DNA of 20 ...
9-115 8.58e-36

Double-stranded DNA-binding domain; This domain is believed to bind double-stranded DNA of 20 bases length.


:

Pssm-ID: 307898  Cd Length: 105  Bit Score: 121.43  E-value: 8.58e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41055911     9 IRQQRMAELQAKHGDRSsdQQGQQEAKQRETEMRNSILAQVLDQSARARLSNLALVKPDKAKAVENYLIQMARFGQLGGK 88
Cdd:pfam01984   1 IRRARLAELQQQQGGGQ--GGEQEQAQEEEEEQKRAILRQILTPEARERLNRIALVKPERAEAVENQLIQLAQSGQLRGK 78
                          90       100
                  ....*....|....*....|....*..
gi 41055911    89 ITEAGLIEILEKVSQQTEKKTTVKFNR 115
Cdd:pfam01984  79 ITEEQLKELLEQVSEQKKKETKIKFER 105
 
Name Accession Description Interval E-value
dsDNA_bind pfam01984
Double-stranded DNA-binding domain; This domain is believed to bind double-stranded DNA of 20 ...
9-115 8.58e-36

Double-stranded DNA-binding domain; This domain is believed to bind double-stranded DNA of 20 bases length.


Pssm-ID: 307898  Cd Length: 105  Bit Score: 121.43  E-value: 8.58e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41055911     9 IRQQRMAELQAKHGDRSsdQQGQQEAKQRETEMRNSILAQVLDQSARARLSNLALVKPDKAKAVENYLIQMARFGQLGGK 88
Cdd:pfam01984   1 IRRARLAELQQQQGGGQ--GGEQEQAQEEEEEQKRAILRQILTPEARERLNRIALVKPERAEAVENQLIQLAQSGQLRGK 78
                          90       100
                  ....*....|....*....|....*..
gi 41055911    89 ITEAGLIEILEKVSQQTEKKTTVKFNR 115
Cdd:pfam01984  79 ITEEQLKELLEQVSEQKKKETKIKFER 105
PDCD5 COG2118
DNA-binding TFAR19-related protein, PDSD5 family [General function prediction only];
1-116 5.26e-25

DNA-binding TFAR19-related protein, PDSD5 family [General function prediction only];


Pssm-ID: 225029  Cd Length: 116  Bit Score: 93.97  E-value: 5.26e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41055911   1 MADEELEAIRQQRMAELQAKHGDRSSDQQGQQEAKQRETEMRNSILAQVLDQSARARLSNLALVKPDKAKAVENYLIQMA 80
Cdd:COG2118   1 MDDEELEEIRRRKLAELQRQAKLEEQREAQEEQARQEEEAQKQAILRQILTPEARERLARVRLVRPELAEAVENQLIQLA 80
                        90       100       110
                ....*....|....*....|....*....|....*.
gi 41055911  81 RFGQLGGKITEAGLIEILEKVSQQTEKKTTVKFNRR 116
Cdd:COG2118  81 QTGRITHKIDEEELKEILERISPQTRREFKIRRRRK 116
PRK04239 PRK04239
hypothetical protein; Provisional
4-104 1.23e-18

hypothetical protein; Provisional


Pssm-ID: 179798  Cd Length: 110  Bit Score: 76.84  E-value: 1.23e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41055911    4 EELEAIRQQRMAELQAKHGDRSSDQQGQQEAKQRETEMRNSILAQVLDQSARARLSNLALVKPDKAKAVENYLIQMARFG 83
Cdd:PRK04239   1 EELEEIRRRKLEELQKQAQEQQQAQEEQEEAQAQAEAQKQAILRQILTPEARERLNRIKLVKPEFAEQVEQQLIQLAQSG 80
                         90       100
                 ....*....|....*....|.
gi 41055911   84 QLGGKITEAGLIEILEKVSQQ 104
Cdd:PRK04239  81 RIQGPIDDEQLKEILEQLTPQ 101
 
Name Accession Description Interval E-value
dsDNA_bind pfam01984
Double-stranded DNA-binding domain; This domain is believed to bind double-stranded DNA of 20 ...
9-115 8.58e-36

Double-stranded DNA-binding domain; This domain is believed to bind double-stranded DNA of 20 bases length.


Pssm-ID: 307898  Cd Length: 105  Bit Score: 121.43  E-value: 8.58e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41055911     9 IRQQRMAELQAKHGDRSsdQQGQQEAKQRETEMRNSILAQVLDQSARARLSNLALVKPDKAKAVENYLIQMARFGQLGGK 88
Cdd:pfam01984   1 IRRARLAELQQQQGGGQ--GGEQEQAQEEEEEQKRAILRQILTPEARERLNRIALVKPERAEAVENQLIQLAQSGQLRGK 78
                          90       100
                  ....*....|....*....|....*..
gi 41055911    89 ITEAGLIEILEKVSQQTEKKTTVKFNR 115
Cdd:pfam01984  79 ITEEQLKELLEQVSEQKKKETKIKFER 105
PDCD5 COG2118
DNA-binding TFAR19-related protein, PDSD5 family [General function prediction only];
1-116 5.26e-25

DNA-binding TFAR19-related protein, PDSD5 family [General function prediction only];


Pssm-ID: 225029  Cd Length: 116  Bit Score: 93.97  E-value: 5.26e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41055911   1 MADEELEAIRQQRMAELQAKHGDRSSDQQGQQEAKQRETEMRNSILAQVLDQSARARLSNLALVKPDKAKAVENYLIQMA 80
Cdd:COG2118   1 MDDEELEEIRRRKLAELQRQAKLEEQREAQEEQARQEEEAQKQAILRQILTPEARERLARVRLVRPELAEAVENQLIQLA 80
                        90       100       110
                ....*....|....*....|....*....|....*.
gi 41055911  81 RFGQLGGKITEAGLIEILEKVSQQTEKKTTVKFNRR 116
Cdd:COG2118  81 QTGRITHKIDEEELKEILERISPQTRREFKIRRRRK 116
PRK04239 PRK04239
hypothetical protein; Provisional
4-104 1.23e-18

hypothetical protein; Provisional


Pssm-ID: 179798  Cd Length: 110  Bit Score: 76.84  E-value: 1.23e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41055911    4 EELEAIRQQRMAELQAKHGDRSSDQQGQQEAKQRETEMRNSILAQVLDQSARARLSNLALVKPDKAKAVENYLIQMARFG 83
Cdd:PRK04239   1 EELEEIRRRKLEELQKQAQEQQQAQEEQEEAQAQAEAQKQAILRQILTPEARERLNRIKLVKPEFAEQVEQQLIQLAQSG 80
                         90       100
                 ....*....|....*....|.
gi 41055911   84 QLGGKITEAGLIEILEKVSQQ 104
Cdd:PRK04239  81 RIQGPIDDEQLKEILEQLTPQ 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.16
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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