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Conserved domains on  [gi|254553386|ref|NP_035947|]
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growth arrest and DNA damage-inducible protein GADD45 gamma [Mus musculus]

Protein Classification

similar to ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (domain architecture ID 10472466)

protein similar to ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
24-106 5.24e-10

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


:

Pssm-ID: 307418  Cd Length: 95  Bit Score: 53.40  E-value: 5.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254553386   24 KALHELLLSAQRQGCLTAGVYESAKVLNVDpdNVTFCVLAADEEDEGDIALqihftlIQAFCCENDIDIVRVGDVQRLAA 103
Cdd:pfam01248   1 DALEEVLKKALKTGKLVLGLKEVTKALRRG--EAKLVVIAEDCDPIEKVKL------IPALCKEKNVPYVKVPSKKELGE 72

                  ...
gi 254553386  104 IVG 106
Cdd:pfam01248  73 ACG 75
 
Name Accession Description Interval E-value
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
24-106 5.24e-10

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 307418  Cd Length: 95  Bit Score: 53.40  E-value: 5.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254553386   24 KALHELLLSAQRQGCLTAGVYESAKVLNVDpdNVTFCVLAADEEDEGDIALqihftlIQAFCCENDIDIVRVGDVQRLAA 103
Cdd:pfam01248   1 DALEEVLKKALKTGKLVLGLKEVTKALRRG--EAKLVVIAEDCDPIEKVKL------IPALCKEKNVPYVKVPSKKELGE 72

                  ...
gi 254553386  104 IVG 106
Cdd:pfam01248  73 ACG 75
 
Name Accession Description Interval E-value
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
24-106 5.24e-10

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 307418  Cd Length: 95  Bit Score: 53.40  E-value: 5.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254553386   24 KALHELLLSAQRQGCLTAGVYESAKVLNVDpdNVTFCVLAADEEDEGDIALqihftlIQAFCCENDIDIVRVGDVQRLAA 103
Cdd:pfam01248   1 DALEEVLKKALKTGKLVLGLKEVTKALRRG--EAKLVVIAEDCDPIEKVKL------IPALCKEKNVPYVKVPSKKELGE 72

                  ...
gi 254553386  104 IVG 106
Cdd:pfam01248  73 ACG 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.16
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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