NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2039610638|emb|CAG5874752|]
View 

phage-associated protein [Streptococcus pneumoniae]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Phage_rep_org_N super family cl09889
N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal ...
 9-126 2.62e-18

N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region is N-terminal to the low-complexity region.


The actual alignment was detected with superfamily member TIGR01714:

Pssm-ID: 447848  Cd Length: 119  Bit Score: 77.92  E-value: 2.62e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039610638   9 WIKLKEEFFTDKRIKRLRRISGGDTYTIIYLKLLLLSLKDEGKLYYDGVESDFIKELALTIDETDDDVMVTVNYLINQGL 88
Cdd:TIGR01714   1 WIKLKVNFFDSKEIKLLEKMPEGDTHTIIWLKLLLLSLNDGGCIYLNELAPYNAEMLATMFNRNVGDIRITLQTLESLGL 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2039610638  89 LEvVTENDEYYLTEIPNLIGSETAWAEKKR-RYRQNKQR 126
Cdd:TIGR01714  81 IE-KKNNGDIFLENWEKHVGSDSASARRERkFRRNQKAL 118
 
Name Accession Description Interval E-value
phage_rep_org_N TIGR01714
phage replisome organizer, putative, N-terminal region; This model represents the N-terminal ...
 9-126 2.62e-18

phage replisome organizer, putative, N-terminal region; This model represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region covered by this model is N-terminal to the low-complexity region. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 130775  Cd Length: 119  Bit Score: 77.92  E-value: 2.62e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039610638   9 WIKLKEEFFTDKRIKRLRRISGGDTYTIIYLKLLLLSLKDEGKLYYDGVESDFIKELALTIDETDDDVMVTVNYLINQGL 88
Cdd:TIGR01714   1 WIKLKVNFFDSKEIKLLEKMPEGDTHTIIWLKLLLLSLNDGGCIYLNELAPYNAEMLATMFNRNVGDIRITLQTLESLGL 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2039610638  89 LEvVTENDEYYLTEIPNLIGSETAWAEKKR-RYRQNKQR 126
Cdd:TIGR01714  81 IE-KKNNGDIFLENWEKHVGSDSASARRERkFRRNQKAL 118
Phage_rep_org_N pfam09681
N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal ...
 9-123 4.35e-10

N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region is N-terminal to the low-complexity region.


Pssm-ID: 430749  Cd Length: 121  Bit Score: 55.86  E-value: 4.35e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039610638   9 WIKLKEEFFTDKRIKRLRRISGGDTYTIIYLK--LLLLSLKDEGKLYYDGVESDFIKELALTIDETDDDVMVTVNYLINQ 86
Cdd:pfam09681   1 WIKLKVNMFDDEKIKLIEKMPEGDTYIVIWLKllLLSGKTNNNGYIMLSENIPYTAEMLATIFNRPLNTVRLALQTFKQF 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2039610638  87 GLLEvVTENDEYYLTEIPNLIGSETAWA--EKKRRYRQN 123
Cdd:pfam09681  81 GMIE-ISDNGAIKITNWSKHQNLESLEKhrERTRRRKQK 118
 
Name Accession Description Interval E-value
phage_rep_org_N TIGR01714
phage replisome organizer, putative, N-terminal region; This model represents the N-terminal ...
 9-126 2.62e-18

phage replisome organizer, putative, N-terminal region; This model represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region covered by this model is N-terminal to the low-complexity region. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 130775  Cd Length: 119  Bit Score: 77.92  E-value: 2.62e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039610638   9 WIKLKEEFFTDKRIKRLRRISGGDTYTIIYLKLLLLSLKDEGKLYYDGVESDFIKELALTIDETDDDVMVTVNYLINQGL 88
Cdd:TIGR01714   1 WIKLKVNFFDSKEIKLLEKMPEGDTHTIIWLKLLLLSLNDGGCIYLNELAPYNAEMLATMFNRNVGDIRITLQTLESLGL 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2039610638  89 LEvVTENDEYYLTEIPNLIGSETAWAEKKR-RYRQNKQR 126
Cdd:TIGR01714  81 IE-KKNNGDIFLENWEKHVGSDSASARRERkFRRNQKAL 118
Phage_rep_org_N pfam09681
N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal ...
 9-123 4.35e-10

N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region is N-terminal to the low-complexity region.


Pssm-ID: 430749  Cd Length: 121  Bit Score: 55.86  E-value: 4.35e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039610638   9 WIKLKEEFFTDKRIKRLRRISGGDTYTIIYLK--LLLLSLKDEGKLYYDGVESDFIKELALTIDETDDDVMVTVNYLINQ 86
Cdd:pfam09681   1 WIKLKVNMFDDEKIKLIEKMPEGDTYIVIWLKllLLSGKTNNNGYIMLSENIPYTAEMLATIFNRPLNTVRLALQTFKQF 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2039610638  87 GLLEvVTENDEYYLTEIPNLIGSETAWA--EKKRRYRQN 123
Cdd:pfam09681  81 GMIE-ISDNGAIKITNWSKHQNLESLEKhrERTRRRKQK 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH