NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15595393|ref|NP_248887|]
View 

pyridine nucleotide transhydrogenase subunit beta [Pseudomonas aeruginosa PAO1]

Protein Classification

NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta( domain architecture ID 10003429)

NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta is part of a tetrameric membrane-bound proton pump (composed of two alpha and two beta subunits) that catalyzes the reversible transfer of a hydride ion equivalent between NAD and NADP

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PntB COG1282
NAD/NADP transhydrogenase beta subunit [Energy production and conversion];
1-477 0e+00

NAD/NADP transhydrogenase beta subunit [Energy production and conversion];


:

Pssm-ID: 440893  Cd Length: 458  Bit Score: 724.18  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393   1 MSMNLVTLLYLIASVCFIQALKGLSHPTTSRRGNLFGMVGMAIAVATTVglvfkLGAEIatTGVGYIVVGLLVGGTAGSI 80
Cdd:COG1282   1 MSNTLITLAYLVAAVLFILGLKGLSSPETARRGNLLGAVGMLIAVVATL-----LLPGI--VNYGLILAAIAIGGAIGAV 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393  81 MAKRVEMTKMPELVAFMHSMIGLAAVFIAIAAVVEPQslgivaHLGDTIPTGNRLELFLGAAIGAITFSGSVIAFGKLSG 160
Cdd:COG1282  74 LARKVEMTAMPQLVALFNGFGGLAAALVAAAELLEPG------ALAGALPAIHLIEIVLGVLIGAVTFTGSLIAFGKLQG 147

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393 161 KykfrlFQGTPVQFSGQHLLNLVLGLATLGLGLVFMFT-GNLTAFAVMLALAFVLGVLIIIPIGGADMPVVVSMLNSYSG 239
Cdd:COG1282 148 L-----ISGKPITFPGQHLLNLLLLLAIVALGVLFVVSpGSLLLLLLLTVLALLLGVLLVLPIGGADMPVVISLLNSYSG 222

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393 240 WAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGAEADAGgpAGSKEQRPVKSGSADDASFLLT 319
Cdd:COG1282 223 LAAAAAGFVLGNDLLIIAGALVGASGAILTYIMCKAMNRSLINVLFGGFGGGGAAA--AGAAEQGEVKEISAEDAAILLA 300

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393 320 NADSVIIVPGYGLAVARAQHALMELAEKLTHRGVTVKFAIHPVAGRMPGHMNVLLAEAEVPYEQVFEMEDINSEFGQTDV 399
Cdd:COG1282 301 YASSVIIVPGYGMAVAQAQHAVRELADLLEERGVEVKFAIHPVAGRMPGHMNVLLAEANVPYDQLLEMDEINPEFAQTDV 380

                       410       420       430       440       450       460       470
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15595393 400 VLVLGANDVVNPAAKNDPKSPIAGMPILEAYKAKTVIVNKRSMASGYAGLDNELFYLDKTMMVFGDAKKVIEDMVKAV 477
Cdd:COG1282 381 ALVIGANDVVNPAARTDPGSPIYGMPILEVDKAKTVIVIKRSMGPGYAGVENPLFYKDNTRMLFGDAKKSVEELVKAL 458
 
Name Accession Description Interval E-value
PntB COG1282
NAD/NADP transhydrogenase beta subunit [Energy production and conversion];
1-477 0e+00

NAD/NADP transhydrogenase beta subunit [Energy production and conversion];


Pssm-ID: 440893  Cd Length: 458  Bit Score: 724.18  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393   1 MSMNLVTLLYLIASVCFIQALKGLSHPTTSRRGNLFGMVGMAIAVATTVglvfkLGAEIatTGVGYIVVGLLVGGTAGSI 80
Cdd:COG1282   1 MSNTLITLAYLVAAVLFILGLKGLSSPETARRGNLLGAVGMLIAVVATL-----LLPGI--VNYGLILAAIAIGGAIGAV 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393  81 MAKRVEMTKMPELVAFMHSMIGLAAVFIAIAAVVEPQslgivaHLGDTIPTGNRLELFLGAAIGAITFSGSVIAFGKLSG 160
Cdd:COG1282  74 LARKVEMTAMPQLVALFNGFGGLAAALVAAAELLEPG------ALAGALPAIHLIEIVLGVLIGAVTFTGSLIAFGKLQG 147

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393 161 KykfrlFQGTPVQFSGQHLLNLVLGLATLGLGLVFMFT-GNLTAFAVMLALAFVLGVLIIIPIGGADMPVVVSMLNSYSG 239
Cdd:COG1282 148 L-----ISGKPITFPGQHLLNLLLLLAIVALGVLFVVSpGSLLLLLLLTVLALLLGVLLVLPIGGADMPVVISLLNSYSG 222

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393 240 WAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGAEADAGgpAGSKEQRPVKSGSADDASFLLT 319
Cdd:COG1282 223 LAAAAAGFVLGNDLLIIAGALVGASGAILTYIMCKAMNRSLINVLFGGFGGGGAAA--AGAAEQGEVKEISAEDAAILLA 300

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393 320 NADSVIIVPGYGLAVARAQHALMELAEKLTHRGVTVKFAIHPVAGRMPGHMNVLLAEAEVPYEQVFEMEDINSEFGQTDV 399
Cdd:COG1282 301 YASSVIIVPGYGMAVAQAQHAVRELADLLEERGVEVKFAIHPVAGRMPGHMNVLLAEANVPYDQLLEMDEINPEFAQTDV 380

                       410       420       430       440       450       460       470
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15595393 400 VLVLGANDVVNPAAKNDPKSPIAGMPILEAYKAKTVIVNKRSMASGYAGLDNELFYLDKTMMVFGDAKKVIEDMVKAV 477
Cdd:COG1282 381 ALVIGANDVVNPAARTDPGSPIYGMPILEVDKAKTVIVIKRSMGPGYAGVENPLFYKDNTRMLFGDAKKSVEELVKAL 458
PNTB pfam02233
NAD(P) transhydrogenase beta subunit; This family corresponds to the beta subunit of NADP ...
 8-476 0e+00

NAD(P) transhydrogenase beta subunit; This family corresponds to the beta subunit of NADP transhydrogenase in prokaryotes, and either the protein N- or C terminal in eukaryotes. The domain is often found in conjunction with pfam01262. Pyridine nucleotide transhydrogenase catalyzes the reduction of NAD+ to NADPH. A complete loss of activity occurs upon mutation of Gly314 in E. coli.


Pssm-ID: 460502  Cd Length: 454  Bit Score: 686.10  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393     8 LLYLIASVCFIQALKGLSHPTTSRRGNLFGMVGMAIAVATTvglvFKLGAEIATTGVGYIVVGLLVGGTAGSIMAKRVEM 87
Cdd:pfam02233   1 AAYLVAAVLFILGLKGLSSPKTARRGNLLGAIGMALAIVAT----LLLGALADSLPYGLILIAIAIGGVIGLYIARRVKM 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393    88 TKMPELVAFMHSMIGLAAVFIAIAAVVEPQSLGIvahlgdTIPTGNRLELFLGAAIGAITFSGSVIAFGKLSGKykfrlF 167
Cdd:pfam02233  77 TAMPQLVALFHSLGGLAAVLVAIAEYLAPEAFGA------GISAFHLVEIVLGVLIGAVTFTGSLIAFGKLQGL-----L 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393   168 QGTPVQFSGQHLLNLVLGLATLGLGLVFMFTGNLTAFAVMLALAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGF 247
Cdd:pfam02233 146 SSKPLTLPGRHLLNLLLLLAIVVLGVLFVAAPSSPGLWLLTALALLLGVLLVLPIGGADMPVVISLLNSYSGWAAAAAGF 225

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393   248 SLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGAEADAGGPAGSKEQRPVKSGSADDASFLLTNADSVIIV 327
Cdd:pfam02233 226 VLGNPLLIIAGALVGASGAILTYIMCKAMNRSLTNVLFGGFGAAASAGAAGAAAADGEVKEISAEDAAELLAYASSVIIV 305

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393   328 PGYGLAVARAQHALMELAEKLTHRGVTVKFAIHPVAGRMPGHMNVLLAEAEVPYEQVFEMEDINSEFGQTDVVLVLGAND 407
Cdd:pfam02233 306 PGYGMAVAQAQHAVAELADLLEERGVEVRFAIHPVAGRMPGHMNVLLAEADVPYDIVLEMDEINDDFADTDVALVIGAND 385

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15595393   408 VVNPAAKNDPKSPIAGMPILEAYKAKTVIVNKRSMASGYAGLDNELFYLDKTMMVFGDAKKVIEDMVKA 476
Cdd:pfam02233 386 VVNPAARTDPGSPIYGMPILEVWKAKTVIVIKRSMGPGYAGVDNPLFYKDNTRMLFGDAKKSLEELVKA 454
pntB PRK09444
Re/Si-specific NAD(P)(+) transhydrogenase subunit beta;
1-477 0e+00

Re/Si-specific NAD(P)(+) transhydrogenase subunit beta;


Pssm-ID: 236520  Cd Length: 462  Bit Score: 529.67  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393    1 MSMNLVTLLYLIASVCFIQALKGLSHPTTSRRGNLFGMVGMAIAVATTVglvfkLGAEiaTTGVGYIVVGLLVGGTAGSI 80
Cdd:PRK09444   1 MSGGLVTAAYIVAAILFIFSLAGLSKHETSRQGNNFGIAGMAIALIATI-----FGPD--TGNVGWIIIAMVIGGAIGIR 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393   81 MAKRVEMTKMPELVAFMHSMIGLAAVFIAIAAVVEPQSlgIVAHLGDTIptgNRLELFLGAAIGAITFSGSVIAFGKLSG 160
Cdd:PRK09444  74 LAKKVEMTEMPELVAILHSFVGLAAVLVGFNSYLDHDA--GMAPVLVNI---HLTEVFLGIFIGAVTFTGSIVAFGKLRG 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393  161 KykfrlFQGTPVQFSGQHLLNLVLGLATLGLGLVFMFTGN----LTAFAVMLALAFVLGVLIIIPIGGADMPVVVSMLNS 236
Cdd:PRK09444 149 K-----ISSKPLMLPHRHKLNLAALVVSFLLLIVFVRTDSvglqVFALLLMTLIALAFGWHLVASIGGADMPVVVSMLNS 223

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393  237 YSGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGAEADAGGpaGSKEQRPVKSGSADDASF 316
Cdd:PRK09444 224 YSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFGTDGSSTG--DDEEVGEHRETTAEEVAE 301

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393  317 LLTNADSVIIVPGYGLAVARAQHALMELAEKLTHRGVTVKFAIHPVAGRMPGHMNVLLAEAEVPYEQVFEMEDINSEFGQ 396
Cdd:PRK09444 302 MLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFAD 381

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393  397 TDVVLVLGANDVVNPAAKNDPKSPIAGMPILEAYKAKTVIVNKRSMASGYAGLDNELFYLDKTMMVFGDAKKVIEDMVKA 476
Cdd:PRK09444 382 TDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTQMLFGDAKASVDAILKA 461


                 .
gi 15595393  477 V 477
Cdd:PRK09444 462 L 462
 
Name Accession Description Interval E-value
PntB COG1282
NAD/NADP transhydrogenase beta subunit [Energy production and conversion];
1-477 0e+00

NAD/NADP transhydrogenase beta subunit [Energy production and conversion];


Pssm-ID: 440893  Cd Length: 458  Bit Score: 724.18  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393   1 MSMNLVTLLYLIASVCFIQALKGLSHPTTSRRGNLFGMVGMAIAVATTVglvfkLGAEIatTGVGYIVVGLLVGGTAGSI 80
Cdd:COG1282   1 MSNTLITLAYLVAAVLFILGLKGLSSPETARRGNLLGAVGMLIAVVATL-----LLPGI--VNYGLILAAIAIGGAIGAV 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393  81 MAKRVEMTKMPELVAFMHSMIGLAAVFIAIAAVVEPQslgivaHLGDTIPTGNRLELFLGAAIGAITFSGSVIAFGKLSG 160
Cdd:COG1282  74 LARKVEMTAMPQLVALFNGFGGLAAALVAAAELLEPG------ALAGALPAIHLIEIVLGVLIGAVTFTGSLIAFGKLQG 147

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393 161 KykfrlFQGTPVQFSGQHLLNLVLGLATLGLGLVFMFT-GNLTAFAVMLALAFVLGVLIIIPIGGADMPVVVSMLNSYSG 239
Cdd:COG1282 148 L-----ISGKPITFPGQHLLNLLLLLAIVALGVLFVVSpGSLLLLLLLTVLALLLGVLLVLPIGGADMPVVISLLNSYSG 222

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393 240 WAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGAEADAGgpAGSKEQRPVKSGSADDASFLLT 319
Cdd:COG1282 223 LAAAAAGFVLGNDLLIIAGALVGASGAILTYIMCKAMNRSLINVLFGGFGGGGAAA--AGAAEQGEVKEISAEDAAILLA 300

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393 320 NADSVIIVPGYGLAVARAQHALMELAEKLTHRGVTVKFAIHPVAGRMPGHMNVLLAEAEVPYEQVFEMEDINSEFGQTDV 399
Cdd:COG1282 301 YASSVIIVPGYGMAVAQAQHAVRELADLLEERGVEVKFAIHPVAGRMPGHMNVLLAEANVPYDQLLEMDEINPEFAQTDV 380

                       410       420       430       440       450       460       470
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15595393 400 VLVLGANDVVNPAAKNDPKSPIAGMPILEAYKAKTVIVNKRSMASGYAGLDNELFYLDKTMMVFGDAKKVIEDMVKAV 477
Cdd:COG1282 381 ALVIGANDVVNPAARTDPGSPIYGMPILEVDKAKTVIVIKRSMGPGYAGVENPLFYKDNTRMLFGDAKKSVEELVKAL 458
PNTB pfam02233
NAD(P) transhydrogenase beta subunit; This family corresponds to the beta subunit of NADP ...
 8-476 0e+00

NAD(P) transhydrogenase beta subunit; This family corresponds to the beta subunit of NADP transhydrogenase in prokaryotes, and either the protein N- or C terminal in eukaryotes. The domain is often found in conjunction with pfam01262. Pyridine nucleotide transhydrogenase catalyzes the reduction of NAD+ to NADPH. A complete loss of activity occurs upon mutation of Gly314 in E. coli.


Pssm-ID: 460502  Cd Length: 454  Bit Score: 686.10  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393     8 LLYLIASVCFIQALKGLSHPTTSRRGNLFGMVGMAIAVATTvglvFKLGAEIATTGVGYIVVGLLVGGTAGSIMAKRVEM 87
Cdd:pfam02233   1 AAYLVAAVLFILGLKGLSSPKTARRGNLLGAIGMALAIVAT----LLLGALADSLPYGLILIAIAIGGVIGLYIARRVKM 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393    88 TKMPELVAFMHSMIGLAAVFIAIAAVVEPQSLGIvahlgdTIPTGNRLELFLGAAIGAITFSGSVIAFGKLSGKykfrlF 167
Cdd:pfam02233  77 TAMPQLVALFHSLGGLAAVLVAIAEYLAPEAFGA------GISAFHLVEIVLGVLIGAVTFTGSLIAFGKLQGL-----L 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393   168 QGTPVQFSGQHLLNLVLGLATLGLGLVFMFTGNLTAFAVMLALAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGF 247
Cdd:pfam02233 146 SSKPLTLPGRHLLNLLLLLAIVVLGVLFVAAPSSPGLWLLTALALLLGVLLVLPIGGADMPVVISLLNSYSGWAAAAAGF 225

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393   248 SLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGAEADAGGPAGSKEQRPVKSGSADDASFLLTNADSVIIV 327
Cdd:pfam02233 226 VLGNPLLIIAGALVGASGAILTYIMCKAMNRSLTNVLFGGFGAAASAGAAGAAAADGEVKEISAEDAAELLAYASSVIIV 305

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393   328 PGYGLAVARAQHALMELAEKLTHRGVTVKFAIHPVAGRMPGHMNVLLAEAEVPYEQVFEMEDINSEFGQTDVVLVLGAND 407
Cdd:pfam02233 306 PGYGMAVAQAQHAVAELADLLEERGVEVRFAIHPVAGRMPGHMNVLLAEADVPYDIVLEMDEINDDFADTDVALVIGAND 385

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15595393   408 VVNPAAKNDPKSPIAGMPILEAYKAKTVIVNKRSMASGYAGLDNELFYLDKTMMVFGDAKKVIEDMVKA 476
Cdd:pfam02233 386 VVNPAARTDPGSPIYGMPILEVWKAKTVIVIKRSMGPGYAGVDNPLFYKDNTRMLFGDAKKSLEELVKA 454
pntB PRK09444
Re/Si-specific NAD(P)(+) transhydrogenase subunit beta;
1-477 0e+00

Re/Si-specific NAD(P)(+) transhydrogenase subunit beta;


Pssm-ID: 236520  Cd Length: 462  Bit Score: 529.67  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393    1 MSMNLVTLLYLIASVCFIQALKGLSHPTTSRRGNLFGMVGMAIAVATTVglvfkLGAEiaTTGVGYIVVGLLVGGTAGSI 80
Cdd:PRK09444   1 MSGGLVTAAYIVAAILFIFSLAGLSKHETSRQGNNFGIAGMAIALIATI-----FGPD--TGNVGWIIIAMVIGGAIGIR 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393   81 MAKRVEMTKMPELVAFMHSMIGLAAVFIAIAAVVEPQSlgIVAHLGDTIptgNRLELFLGAAIGAITFSGSVIAFGKLSG 160
Cdd:PRK09444  74 LAKKVEMTEMPELVAILHSFVGLAAVLVGFNSYLDHDA--GMAPVLVNI---HLTEVFLGIFIGAVTFTGSIVAFGKLRG 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393  161 KykfrlFQGTPVQFSGQHLLNLVLGLATLGLGLVFMFTGN----LTAFAVMLALAFVLGVLIIIPIGGADMPVVVSMLNS 236
Cdd:PRK09444 149 K-----ISSKPLMLPHRHKLNLAALVVSFLLLIVFVRTDSvglqVFALLLMTLIALAFGWHLVASIGGADMPVVVSMLNS 223

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393  237 YSGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGAEADAGGpaGSKEQRPVKSGSADDASF 316
Cdd:PRK09444 224 YSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFGTDGSSTG--DDEEVGEHRETTAEEVAE 301

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393  317 LLTNADSVIIVPGYGLAVARAQHALMELAEKLTHRGVTVKFAIHPVAGRMPGHMNVLLAEAEVPYEQVFEMEDINSEFGQ 396
Cdd:PRK09444 302 MLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFAD 381

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595393  397 TDVVLVLGANDVVNPAAKNDPKSPIAGMPILEAYKAKTVIVNKRSMASGYAGLDNELFYLDKTMMVFGDAKKVIEDMVKA 476
Cdd:PRK09444 382 TDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTQMLFGDAKASVDAILKA 461


                 .
gi 15595393  477 V 477
Cdd:PRK09444 462 L 462
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH