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Conserved domains on  [gi|13397826|emb|CAC34569|]
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avidin [Gallus gallus]

Protein Classification

Avidin domain-containing protein (domain architecture ID 10475691)

Avidin domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Avidin pfam01382
Avidin family;
29-145 7.59e-50

Avidin family;


:

Pssm-ID: 307508  Cd Length: 115  Bit Score: 158.65  E-value: 7.59e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13397826    29 SLTGKWDNDLGSNMTIGAVNSKGEFTGTYTTAVTAT-SNEIKESPLHGTQNTINkrTQPTFGFTVNWKFSESTTVFTGQC 107
Cdd:pfam01382   1 NLSGTWYNELGSTMTITQVSTTGEITGTYRTAVEGTgAGGIKPSPLVGWQSNAN--DGPTFGFSVNWDNGDSTTSWTGQC 78
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 13397826   108 FIDrNGKEVLKTMWLLRSSVNDIGDDWKATRVGINIFT 145
Cdd:pfam01382  79 FVC-DGKEVLKTTWLLRSEVDSCDDDWKATRVGQDTFT 115
 
Name Accession Description Interval E-value
Avidin pfam01382
Avidin family;
29-145 7.59e-50

Avidin family;


Pssm-ID: 307508  Cd Length: 115  Bit Score: 158.65  E-value: 7.59e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13397826    29 SLTGKWDNDLGSNMTIGAVNSKGEFTGTYTTAVTAT-SNEIKESPLHGTQNTINkrTQPTFGFTVNWKFSESTTVFTGQC 107
Cdd:pfam01382   1 NLSGTWYNELGSTMTITQVSTTGEITGTYRTAVEGTgAGGIKPSPLVGWQSNAN--DGPTFGFSVNWDNGDSTTSWTGQC 78
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 13397826   108 FIDrNGKEVLKTMWLLRSSVNDIGDDWKATRVGINIFT 145
Cdd:pfam01382  79 FVC-DGKEVLKTTWLLRSEVDSCDDDWKATRVGQDTFT 115
 
Name Accession Description Interval E-value
Avidin pfam01382
Avidin family;
29-145 7.59e-50

Avidin family;


Pssm-ID: 307508  Cd Length: 115  Bit Score: 158.65  E-value: 7.59e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13397826    29 SLTGKWDNDLGSNMTIGAVNSKGEFTGTYTTAVTAT-SNEIKESPLHGTQNTINkrTQPTFGFTVNWKFSESTTVFTGQC 107
Cdd:pfam01382   1 NLSGTWYNELGSTMTITQVSTTGEITGTYRTAVEGTgAGGIKPSPLVGWQSNAN--DGPTFGFSVNWDNGDSTTSWTGQC 78
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 13397826   108 FIDrNGKEVLKTMWLLRSSVNDIGDDWKATRVGINIFT 145
Cdd:pfam01382  79 FVC-DGKEVLKTTWLLRSEVDSCDDDWKATRVGQDTFT 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.16
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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