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Conserved domains on  [gi|109130767|ref|XP_001082556|]
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PREDICTED: P antigen family member 4 [Macaca mulatta]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GAGE super family cl05418
GAGE protein; This family consists of several GAGE and XAGE proteins which are found ...
14-98 5.40e-22

GAGE protein; This family consists of several GAGE and XAGE proteins which are found exclusively in humans. The function of this family is unknown although they have been implicated in human cancers.


The actual alignment was detected with superfamily member pfam05831:

Pssm-ID: 310430  Cd Length: 107  Bit Score: 84.73  E-value: 5.40e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109130767   14 DGQEAPDVFAFVAPGE-----SQQEEPPTDNQDIEPGRERER--TPPIEERKVEGDCQEMDLENTGNERGDGSDVKEKTP 86
Cdd:pfam05831  16 DDQESSQLVGPVVAQQpsdeqPQQEEPPTESQDITPGQEREDegASAIQGPDLEADLQELVLPKTGGERGDGPDVKGKIL 95
                          90
                  ....*....|..
gi 109130767   87 PNPERAKTKEAG 98
Cdd:pfam05831  96 PNLEPVKMPEAG 107
 
Name Accession Description Interval E-value
GAGE pfam05831
GAGE protein; This family consists of several GAGE and XAGE proteins which are found ...
14-98 5.40e-22

GAGE protein; This family consists of several GAGE and XAGE proteins which are found exclusively in humans. The function of this family is unknown although they have been implicated in human cancers.


Pssm-ID: 310430  Cd Length: 107  Bit Score: 84.73  E-value: 5.40e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109130767   14 DGQEAPDVFAFVAPGE-----SQQEEPPTDNQDIEPGRERER--TPPIEERKVEGDCQEMDLENTGNERGDGSDVKEKTP 86
Cdd:pfam05831  16 DDQESSQLVGPVVAQQpsdeqPQQEEPPTESQDITPGQEREDegASAIQGPDLEADLQELVLPKTGGERGDGPDVKGKIL 95
                          90
                  ....*....|..
gi 109130767   87 PNPERAKTKEAG 98
Cdd:pfam05831  96 PNLEPVKMPEAG 107
 
Name Accession Description Interval E-value
GAGE pfam05831
GAGE protein; This family consists of several GAGE and XAGE proteins which are found ...
14-98 5.40e-22

GAGE protein; This family consists of several GAGE and XAGE proteins which are found exclusively in humans. The function of this family is unknown although they have been implicated in human cancers.


Pssm-ID: 310430  Cd Length: 107  Bit Score: 84.73  E-value: 5.40e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109130767   14 DGQEAPDVFAFVAPGE-----SQQEEPPTDNQDIEPGRERER--TPPIEERKVEGDCQEMDLENTGNERGDGSDVKEKTP 86
Cdd:pfam05831  16 DDQESSQLVGPVVAQQpsdeqPQQEEPPTESQDITPGQEREDegASAIQGPDLEADLQELVLPKTGGERGDGPDVKGKIL 95
                          90
                  ....*....|..
gi 109130767   87 PNPERAKTKEAG 98
Cdd:pfam05831  96 PNLEPVKMPEAG 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.16
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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