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Conserved domains on  [gi|1173824529|ref|XP_020552573|]
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protein FAR1-RELATED SEQUENCE 5 [Sesamum indicum]

Protein Classification

FHY3/FAR1 family protein( domain architecture ID 1001808)

FHY3/FAR1 family protein similar to FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) which are transcription factors that play multiple roles in a wide range of cellular processes and are crucial for plant growth and development, and to transposases of the Mutator-like element (MULE)

Gene Ontology:  GO:0003677
PubMed:  15591448

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FHY3 super family cl31971
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 6-699 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


The actual alignment was detected with superfamily member PLN03097:

Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 541.12  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529   6 IEFDIGLGGGDDAIDIEPPND-----------DGEMPDGSPNDA----NSLGSGSGDTAFAQSYIPEGDLDLEPYEGMEF 70
Cdd:PLN03097    1 MDIDLRLPSGDHDKEDEEPNGvdnmlsevklhNGDMEIGNVVDVaeevLSIDGGDMNSPTGELVEFKEDTNLEPLSGMEF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529  71 ESEEAAKAFYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGfrnlnEKRTKDREIKRPR---------------T 135
Cdd:PLN03097   81 ESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYG-----TKREYDKSFNRPRarqtkqdpengtgrrS 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 136 VTRVGCKASLSVKIQDSGKWVVSGFVKEHNHELVPPdqvhclrshrqisgpaktlidtlQAAGMGPRRIMSVLIKEYGGI 215
Cdd:PLN03097  156 CAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPA-----------------------QAVSEQTRKMYAAMARQFAEY 212

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 216 SKVGFTEVDCRNYMRNNRQRSME-GDIQLLLDYLKQKQAENPSFFYAVQGDEDQYTGNVFWADPKARTDYSYFGDTVTFD 294
Cdd:PLN03097  213 KNVVGLKNDSKSSFDKGRNLGLEaGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFD 292

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 295 TTYRSNRYRLPFVPFTGLNHHGQPVLFGCAFLINESEASFVWLFKTWLAAMSGRSPVSITTEHDTVIRSAIMQVFPNTRH 374
Cdd:PLN03097  293 TTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHH 372

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 375 RFCKWHIFKQCQEKLSHVLLKHPHFEAALHKCVNLSESTEEFESCWHSLAEKYDLRDHKWLQAIYVDRRQWVPVYLHDTF 454
Cdd:PLN03097  373 CFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAF 452

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 455 FAEMSITQRSDSMNSYFDGYVNASTNLNQFFKLYEKALESRHEKEVKADFDTMNTSAVLKTPSPMEKQASDFYTRKIFMR 534
Cdd:PLN03097  453 LAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKK 532

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 535 FQEELVSTLTFMASKVEDDGEVTTYRVAKFgEDHKAYHVRFNVLEMRATCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSH 614
Cdd:PLN03097  533 FQVEVLGAVACHPKMESQDETSITFRVQDF-EKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQ 611

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 615 YILKRWTRNAKSSVVLEERvtdpfNSYLESHTVRYNTLRHEAFKFVDEGAESVESYTIAMSALTEASKKvAVAIKNEGKP 694
Cdd:PLN03097  612 YILKRWTKDAKSRHLLGEE-----SEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGN-CISMNNSNKS 685


                  ....*
gi 1173824529 695 SISNG 699
Cdd:PLN03097  686 LVEAG 690
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 6-699 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 541.12  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529   6 IEFDIGLGGGDDAIDIEPPND-----------DGEMPDGSPNDA----NSLGSGSGDTAFAQSYIPEGDLDLEPYEGMEF 70
Cdd:PLN03097    1 MDIDLRLPSGDHDKEDEEPNGvdnmlsevklhNGDMEIGNVVDVaeevLSIDGGDMNSPTGELVEFKEDTNLEPLSGMEF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529  71 ESEEAAKAFYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGfrnlnEKRTKDREIKRPR---------------T 135
Cdd:PLN03097   81 ESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYG-----TKREYDKSFNRPRarqtkqdpengtgrrS 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 136 VTRVGCKASLSVKIQDSGKWVVSGFVKEHNHELVPPdqvhclrshrqisgpaktlidtlQAAGMGPRRIMSVLIKEYGGI 215
Cdd:PLN03097  156 CAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPA-----------------------QAVSEQTRKMYAAMARQFAEY 212

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 216 SKVGFTEVDCRNYMRNNRQRSME-GDIQLLLDYLKQKQAENPSFFYAVQGDEDQYTGNVFWADPKARTDYSYFGDTVTFD 294
Cdd:PLN03097  213 KNVVGLKNDSKSSFDKGRNLGLEaGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFD 292

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 295 TTYRSNRYRLPFVPFTGLNHHGQPVLFGCAFLINESEASFVWLFKTWLAAMSGRSPVSITTEHDTVIRSAIMQVFPNTRH 374
Cdd:PLN03097  293 TTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHH 372

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 375 RFCKWHIFKQCQEKLSHVLLKHPHFEAALHKCVNLSESTEEFESCWHSLAEKYDLRDHKWLQAIYVDRRQWVPVYLHDTF 454
Cdd:PLN03097  373 CFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAF 452

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 455 FAEMSITQRSDSMNSYFDGYVNASTNLNQFFKLYEKALESRHEKEVKADFDTMNTSAVLKTPSPMEKQASDFYTRKIFMR 534
Cdd:PLN03097  453 LAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKK 532

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 535 FQEELVSTLTFMASKVEDDGEVTTYRVAKFgEDHKAYHVRFNVLEMRATCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSH 614
Cdd:PLN03097  533 FQVEVLGAVACHPKMESQDETSITFRVQDF-EKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQ 611

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 615 YILKRWTRNAKSSVVLEERvtdpfNSYLESHTVRYNTLRHEAFKFVDEGAESVESYTIAMSALTEASKKvAVAIKNEGKP 694
Cdd:PLN03097  612 YILKRWTKDAKSRHLLGEE-----SEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGN-CISMNNSNKS 685


                  ....*
gi 1173824529 695 SISNG 699
Cdd:PLN03097  686 LVEAG 690
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 291-383 5.51e-35

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 128.15  E-value: 5.51e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 291 VTFDTTYRSNRYRLPFVPFTGLNHHGQPVLFGCAFLINESEASFVWLF---KTWLAAMSGRSPVSITTEHDTVIRSAIMQ 367
Cdd:pfam10551   2 LLIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNETEESFTWLFdqlIAFRECMSGLSPQVIITDRDKALKNAINL 81

                          90
                  ....*....|....*.
gi 1173824529 368 VFPNTRHRFCKWHIFK 383
Cdd:pfam10551  82 VFPEAQHRLCIFHINK 97
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
583-608 1.60e-08

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 50.63  E-value: 1.60e-08
                           10        20
                   ....*....|....*....|....*.
gi 1173824529  583 TCSCQMFEFSGLLCRHVLAVFRVTNV 608
Cdd:smart00575   2 TCSCRKFQLSGIPCRHALAAAIHIGL 27
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 6-699 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 541.12  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529   6 IEFDIGLGGGDDAIDIEPPND-----------DGEMPDGSPNDA----NSLGSGSGDTAFAQSYIPEGDLDLEPYEGMEF 70
Cdd:PLN03097    1 MDIDLRLPSGDHDKEDEEPNGvdnmlsevklhNGDMEIGNVVDVaeevLSIDGGDMNSPTGELVEFKEDTNLEPLSGMEF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529  71 ESEEAAKAFYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGfrnlnEKRTKDREIKRPR---------------T 135
Cdd:PLN03097   81 ESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYG-----TKREYDKSFNRPRarqtkqdpengtgrrS 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 136 VTRVGCKASLSVKIQDSGKWVVSGFVKEHNHELVPPdqvhclrshrqisgpaktlidtlQAAGMGPRRIMSVLIKEYGGI 215
Cdd:PLN03097  156 CAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPA-----------------------QAVSEQTRKMYAAMARQFAEY 212

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 216 SKVGFTEVDCRNYMRNNRQRSME-GDIQLLLDYLKQKQAENPSFFYAVQGDEDQYTGNVFWADPKARTDYSYFGDTVTFD 294
Cdd:PLN03097  213 KNVVGLKNDSKSSFDKGRNLGLEaGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFD 292

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 295 TTYRSNRYRLPFVPFTGLNHHGQPVLFGCAFLINESEASFVWLFKTWLAAMSGRSPVSITTEHDTVIRSAIMQVFPNTRH 374
Cdd:PLN03097  293 TTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHH 372

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 375 RFCKWHIFKQCQEKLSHVLLKHPHFEAALHKCVNLSESTEEFESCWHSLAEKYDLRDHKWLQAIYVDRRQWVPVYLHDTF 454
Cdd:PLN03097  373 CFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAF 452

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 455 FAEMSITQRSDSMNSYFDGYVNASTNLNQFFKLYEKALESRHEKEVKADFDTMNTSAVLKTPSPMEKQASDFYTRKIFMR 534
Cdd:PLN03097  453 LAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKK 532

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 535 FQEELVSTLTFMASKVEDDGEVTTYRVAKFgEDHKAYHVRFNVLEMRATCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSH 614
Cdd:PLN03097  533 FQVEVLGAVACHPKMESQDETSITFRVQDF-EKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQ 611

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 615 YILKRWTRNAKSSVVLEERvtdpfNSYLESHTVRYNTLRHEAFKFVDEGAESVESYTIAMSALTEASKKvAVAIKNEGKP 694
Cdd:PLN03097  612 YILKRWTKDAKSRHLLGEE-----SEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGN-CISMNNSNKS 685


                  ....*
gi 1173824529 695 SISNG 699
Cdd:PLN03097  686 LVEAG 690
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 291-383 5.51e-35

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 128.15  E-value: 5.51e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529 291 VTFDTTYRSNRYRLPFVPFTGLNHHGQPVLFGCAFLINESEASFVWLF---KTWLAAMSGRSPVSITTEHDTVIRSAIMQ 367
Cdd:pfam10551   2 LLIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNETEESFTWLFdqlIAFRECMSGLSPQVIITDRDKALKNAINL 81

                          90
                  ....*....|....*.
gi 1173824529 368 VFPNTRHRFCKWHIFK 383
Cdd:pfam10551  82 VFPEAQHRLCIFHINK 97
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 79-170 7.12e-33

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 121.67  E-value: 7.12e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173824529  79 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEkrtKDREIKRPRTVTRVGCKASLSVKIQDSGKWVVS 158
Cdd:pfam03101   2 FYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQ---RTGEARRPRPSTRTGCKAMIVVKRESDGKWVVT 78

                          90
                  ....*....|..
gi 1173824529 159 GFVKEHNHELVP 170
Cdd:pfam03101  79 QFVKEHNHELLP 90
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
583-608 1.60e-08

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 50.63  E-value: 1.60e-08
                           10        20
                   ....*....|....*....|....*.
gi 1173824529  583 TCSCQMFEFSGLLCRHVLAVFRVTNV 608
Cdd:smart00575   2 TCSCRKFQLSGIPCRHALAAAIHIGL 27
SWIM pfam04434
SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is ...
 571-603 3.83e-08

SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.


Pssm-ID: 309540  Cd Length: 38  Bit Score: 49.72  E-value: 3.83e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1173824529 571 YHVRF-NVLEMRATCSCQMFEFSGLLCRHVLAVF 603
Cdd:pfam04434   1 YRVQLdLDGLEKASCSCPDFQLNGIPCKHALAVL 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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