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Conserved domains on  [gi|1002296113|ref|XP_015611514|]
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transcription factor TB1-like [Oryza sativa Japonica Group]

Protein Classification

TCP family transcription factor( domain architecture ID 10508254)

TCP family transcription factor is a plant-specific transcription factor and may be involved in a wide range of functions such as in leaf development, flower symmetry, shoot branching, and senescence

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TCP pfam03634
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
103-211 9.83e-38

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


:

Pssm-ID: 427413  Cd Length: 152  Bit Score: 130.16  E-value: 9.83e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002296113 103 PFRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLAADPSSSSH-RAAGDTRMS 181
Cdd:pfam03634   1 TSKKDRHSKICTAGGLRDRRVRLSLECARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKELTGTGTIPANfSSLSISLRS 80
                          90       100       110
                  ....*....|....*....|....*....|
gi 1002296113 182 SAERGGDHHMVAVGAAGSGKGDADKARGPR 211
Cdd:pfam03634  81 SGESVSGIDEQAVALLNFHSTNQNSARKKG 110
 
Name Accession Description Interval E-value
TCP pfam03634
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
103-211 9.83e-38

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


Pssm-ID: 427413  Cd Length: 152  Bit Score: 130.16  E-value: 9.83e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002296113 103 PFRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLAADPSSSSH-RAAGDTRMS 181
Cdd:pfam03634   1 TSKKDRHSKICTAGGLRDRRVRLSLECARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKELTGTGTIPANfSSLSISLRS 80
                          90       100       110
                  ....*....|....*....|....*....|
gi 1002296113 182 SAERGGDHHMVAVGAAGSGKGDADKARGPR 211
Cdd:pfam03634  81 SGESVSGIDEQAVALLNFHSTNQNSARKKG 110
TCP2 PLN03106
Protein TCP2; Provisional
107-188 5.82e-15

Protein TCP2; Provisional


Pssm-ID: 215579 [Multi-domain]  Cd Length: 447  Bit Score: 73.96  E-value: 5.82e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002296113 107 DRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLaadPSSSSHRAAGDTRMSSAERG 186
Cdd:PLN03106   76 DRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDSISEL---PSLNNSFPDTPKQLSDEKRT 152

                  ..
gi 1002296113 187 GD 188
Cdd:PLN03106  153 SD 154
 
Name Accession Description Interval E-value
TCP pfam03634
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
103-211 9.83e-38

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


Pssm-ID: 427413  Cd Length: 152  Bit Score: 130.16  E-value: 9.83e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002296113 103 PFRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLAADPSSSSH-RAAGDTRMS 181
Cdd:pfam03634   1 TSKKDRHSKICTAGGLRDRRVRLSLECARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKELTGTGTIPANfSSLSISLRS 80
                          90       100       110
                  ....*....|....*....|....*....|
gi 1002296113 182 SAERGGDHHMVAVGAAGSGKGDADKARGPR 211
Cdd:pfam03634  81 SGESVSGIDEQAVALLNFHSTNQNSARKKG 110
TCP2 PLN03106
Protein TCP2; Provisional
107-188 5.82e-15

Protein TCP2; Provisional


Pssm-ID: 215579 [Multi-domain]  Cd Length: 447  Bit Score: 73.96  E-value: 5.82e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002296113 107 DRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLaadPSSSSHRAAGDTRMSSAERG 186
Cdd:PLN03106   76 DRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDSISEL---PSLNNSFPDTPKQLSDEKRT 152

                  ..
gi 1002296113 187 GD 188
Cdd:PLN03106  153 SD 154
TCP24 PLN03105
transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional
107-183 1.08e-14

transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional


Pssm-ID: 178652  Cd Length: 324  Bit Score: 72.59  E-value: 1.08e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002296113 107 DRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLA--------ADPSSSSHRAAGDT 178
Cdd:PLN03105   52 DRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPllntnfdhLDQNQNQTKSACSS 131

                  ....*
gi 1002296113 179 RMSSA 183
Cdd:PLN03105  132 GTSES 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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