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Conserved domains on  [gi|33356172|ref|NP_002476|]
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nibrin isoform 1 [Homo sapiens]

Protein Classification

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List of domain hits

Name Accession Description Interval E-value
FHA_NBN cd22667
forkhead associated (FHA) domain found in nibrin and similar proteins; Nibrin (NBN), also ...
2-110 8.02e-47

forkhead associated (FHA) domain found in nibrin and similar proteins; Nibrin (NBN), also called cell cycle regulatory protein p95, or Nijmegen breakage syndrome protein 1 (NBS1), is a novel DNA double-strand break repair protein that is mutated in Nijmegen breakage syndrome. It is a component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. Nibrin modulates the DNA damage signal sensing by recruiting PI3/PI4-kinase family members ATM, ATR, and probably DNA-dependent protein kinase catalytic subunit (DNA-PKcs) to the DNA damage sites and activating their functions. It can also recruit MRE11 and RAD50 to the proximity of DSBs by an interaction with the histone H2AX. Nibrin also functions in telomere length maintenance by generating the 3' overhang which serves as a primer for telomerase dependent telomere elongation. Nibrin is a major player in the control of intra-S-phase checkpoint. This subfamily also includes Schizosaccharomyces pombe DNA repair and telomere maintenance protein Nbs1 and Arabidopsis thaliana AtNbs1. SpNbs1 is an FHA domain-containing protein required for DNA damage repair and S-phase DNA damage checkpoint. It is involved in telomere length maintenance and maintenance of chromatin structure. AtNbs1 is a component of MRN complex. It also functions in the very early stages of meiosis. The FHA domain is a small phosphopeptide recognition module.


:

Pssm-ID: 438719 [Multi-domain]  Cd Length: 108  Bit Score: 161.73  E-value: 8.02e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172   2 WKLLPAAGPAGgEPYRLLTGVEYVVGRKNCAILIENDQSISRNHAVLTANFSVTNLSQTDEIPVLTLKDNSKYGTFVNEE 81
Cdd:cd22667   1 WWLLSEQDGAG-TSYYLLPGGEYTVGRKDCDIIIVDDSSISRKHATLTVLHPEANLSDPDTRPELTLKDLSKYGTFVNGE 79
                        90       100
                ....*....|....*....|....*....
gi 33356172  82 KMQNGFSRTLKSGDGITFGVFGSKFRIEY 110
Cdd:cd22667  80 KLKGGSEVTLKDGDVITFGVLGSKFRVEY 108
BRCT_nibrin cd17741
BRCT domain of nibrin and similar proteins; Nibrin (NBN), also termed Nijmegen breakage ...
111-184 4.16e-36

BRCT domain of nibrin and similar proteins; Nibrin (NBN), also termed Nijmegen breakage syndrome protein 1 (NBS1), or cell cycle regulatory protein p95, is a novel DNA double-strand break repair protein that is mutated in Nijmegen breakage syndrome. It is a component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The BRCT (Breast Cancer Suppressor Protein BRCA1, carboxy-terminal) domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks. The Trp-X-X-X-Cys/Ser signature motif of the BRCT family is absent in this group.


:

Pssm-ID: 349372 [Multi-domain]  Cd Length: 74  Bit Score: 130.41  E-value: 4.16e-36
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33356172 111 EPLVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFLKAV 184
Cdd:cd17741   1 EPLVVCSSCLDSEEKKKLKQIIAKLGGKVVNEWTEECTHLVMSKIKVTVKVICALISGKPIVTPEYLDALLEAI 74
Nbs1_C pfam08599
DNA damage repair protein Nbs1; This C terminal region of the DNA damage repair protein Nbs1 ...
683-744 9.34e-34

DNA damage repair protein Nbs1; This C terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1.


:

Pssm-ID: 462531  Cd Length: 62  Bit Score: 123.18  E-value: 9.34e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 33356172   683 KNFKKFKKVTYPGAGKLPHIIGGSDLIAHHARKNTELEEWLRQEMEVQNQHAKEESLADDLF 744
Cdd:pfam08599   1 KNFKKFRKVAYPGAGGLPHIIGGSDLLVHNRGKNSELEEWLKQAMEEESQSAREESLADDLF 62
NIBRIN_BRCT_II pfam16508
Second BRCT domain on Nijmegen syndrome breakage protein;
217-325 3.92e-30

Second BRCT domain on Nijmegen syndrome breakage protein;


:

Pssm-ID: 465151  Cd Length: 118  Bit Score: 115.08  E-value: 3.92e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172   217 ERKQIFKGKTFIFLNAKQHKKLSSAVVFGGGEARL-------------ITEENEEEHNFFLAPGTCVVDTGITnsqtliP 283
Cdd:pfam16508   2 ERKTLFEGKTFVFLDQKQFERLSPPITNGGGKALLyevepgettpddfVRYVKNVGSELLTGKGVVVVRFRPK------K 75
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 33356172   284 DCQKKWIQSIMDMLQRQ-GLRPIPEAEIGLAVIFMTTKNYCDP 325
Cdd:pfam16508  76 SSNEEWIASFENELALRlGQRVIEQSEFLDAILHCSASKLCNP 118
 
Name Accession Description Interval E-value
FHA_NBN cd22667
forkhead associated (FHA) domain found in nibrin and similar proteins; Nibrin (NBN), also ...
2-110 8.02e-47

forkhead associated (FHA) domain found in nibrin and similar proteins; Nibrin (NBN), also called cell cycle regulatory protein p95, or Nijmegen breakage syndrome protein 1 (NBS1), is a novel DNA double-strand break repair protein that is mutated in Nijmegen breakage syndrome. It is a component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. Nibrin modulates the DNA damage signal sensing by recruiting PI3/PI4-kinase family members ATM, ATR, and probably DNA-dependent protein kinase catalytic subunit (DNA-PKcs) to the DNA damage sites and activating their functions. It can also recruit MRE11 and RAD50 to the proximity of DSBs by an interaction with the histone H2AX. Nibrin also functions in telomere length maintenance by generating the 3' overhang which serves as a primer for telomerase dependent telomere elongation. Nibrin is a major player in the control of intra-S-phase checkpoint. This subfamily also includes Schizosaccharomyces pombe DNA repair and telomere maintenance protein Nbs1 and Arabidopsis thaliana AtNbs1. SpNbs1 is an FHA domain-containing protein required for DNA damage repair and S-phase DNA damage checkpoint. It is involved in telomere length maintenance and maintenance of chromatin structure. AtNbs1 is a component of MRN complex. It also functions in the very early stages of meiosis. The FHA domain is a small phosphopeptide recognition module.


Pssm-ID: 438719 [Multi-domain]  Cd Length: 108  Bit Score: 161.73  E-value: 8.02e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172   2 WKLLPAAGPAGgEPYRLLTGVEYVVGRKNCAILIENDQSISRNHAVLTANFSVTNLSQTDEIPVLTLKDNSKYGTFVNEE 81
Cdd:cd22667   1 WWLLSEQDGAG-TSYYLLPGGEYTVGRKDCDIIIVDDSSISRKHATLTVLHPEANLSDPDTRPELTLKDLSKYGTFVNGE 79
                        90       100
                ....*....|....*....|....*....
gi 33356172  82 KMQNGFSRTLKSGDGITFGVFGSKFRIEY 110
Cdd:cd22667  80 KLKGGSEVTLKDGDVITFGVLGSKFRVEY 108
BRCT_nibrin cd17741
BRCT domain of nibrin and similar proteins; Nibrin (NBN), also termed Nijmegen breakage ...
111-184 4.16e-36

BRCT domain of nibrin and similar proteins; Nibrin (NBN), also termed Nijmegen breakage syndrome protein 1 (NBS1), or cell cycle regulatory protein p95, is a novel DNA double-strand break repair protein that is mutated in Nijmegen breakage syndrome. It is a component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The BRCT (Breast Cancer Suppressor Protein BRCA1, carboxy-terminal) domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks. The Trp-X-X-X-Cys/Ser signature motif of the BRCT family is absent in this group.


Pssm-ID: 349372 [Multi-domain]  Cd Length: 74  Bit Score: 130.41  E-value: 4.16e-36
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33356172 111 EPLVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFLKAV 184
Cdd:cd17741   1 EPLVVCSSCLDSEEKKKLKQIIAKLGGKVVNEWTEECTHLVMSKIKVTVKVICALISGKPIVTPEYLDALLEAI 74
Nbs1_C pfam08599
DNA damage repair protein Nbs1; This C terminal region of the DNA damage repair protein Nbs1 ...
683-744 9.34e-34

DNA damage repair protein Nbs1; This C terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1.


Pssm-ID: 462531  Cd Length: 62  Bit Score: 123.18  E-value: 9.34e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 33356172   683 KNFKKFKKVTYPGAGKLPHIIGGSDLIAHHARKNTELEEWLRQEMEVQNQHAKEESLADDLF 744
Cdd:pfam08599   1 KNFKKFRKVAYPGAGGLPHIIGGSDLLVHNRGKNSELEEWLKQAMEEESQSAREESLADDLF 62
NIBRIN_BRCT_II pfam16508
Second BRCT domain on Nijmegen syndrome breakage protein;
217-325 3.92e-30

Second BRCT domain on Nijmegen syndrome breakage protein;


Pssm-ID: 465151  Cd Length: 118  Bit Score: 115.08  E-value: 3.92e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172   217 ERKQIFKGKTFIFLNAKQHKKLSSAVVFGGGEARL-------------ITEENEEEHNFFLAPGTCVVDTGITnsqtliP 283
Cdd:pfam16508   2 ERKTLFEGKTFVFLDQKQFERLSPPITNGGGKALLyevepgettpddfVRYVKNVGSELLTGKGVVVVRFRPK------K 75
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 33356172   284 DCQKKWIQSIMDMLQRQ-GLRPIPEAEIGLAVIFMTTKNYCDP 325
Cdd:pfam16508  76 SSNEEWIASFENELALRlGQRVIEQSEFLDAILHCSASKLCNP 118
FHA COG1716
Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms];
1-111 6.74e-12

Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms];


Pssm-ID: 441322 [Multi-domain]  Cd Length: 96  Bit Score: 62.28  E-value: 6.74e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172   1 MWKLLPAAGPAGGEPYRLlTGVEYVVGR-KNCAILIeNDQSISRNHAVLTA---NFSVTNLsqtdeipvltlkdNSKYGT 76
Cdd:COG1716   1 MARLVVLEGPLAGRRFPL-DGGPLTIGRaPDNDIVL-DDPTVSRRHARIRRdggGWVLEDL-------------GSTNGT 65
                        90       100       110
                ....*....|....*....|....*....|....*
gi 33356172  77 FVNEEKMQNgfSRTLKSGDGITFGvfGSKFRIEYE 111
Cdd:COG1716  66 FVNGQRVTE--PAPLRDGDVIRLG--KTELRFRLS 96
FHA pfam00498
FHA domain; The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.
24-99 1.03e-09

FHA domain; The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.


Pssm-ID: 459831 [Multi-domain]  Cd Length: 66  Bit Score: 54.89  E-value: 1.03e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 33356172    24 YVVGR-KNCAILIeNDQSISRNHAVLTANFSvtnlsqtdeiPVLTLKD-NSKYGTFVNEEKMQNgFSRTLKSGDGITF 99
Cdd:pfam00498   1 VTIGRsPDCDIVL-DDPSVSRRHAEIRYDGG----------GRFYLEDlGSTNGTFVNGQRLGP-EPVRLKDGDVIRL 66
FHA smart00240
Forkhead associated domain; Found in eukaryotic and prokaryotic proteins. Putative nuclear ...
24-83 5.78e-03

Forkhead associated domain; Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.


Pssm-ID: 214578 [Multi-domain]  Cd Length: 52  Bit Score: 35.62  E-value: 5.78e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 33356172     24 YVVGR--KNCAILIEnDQSISRNHAVLTAnfsvtnlsqtDEIPVLTLKDN-SKYGTFVNEEKM 83
Cdd:smart00240   1 VTIGRssEDCDIQLD-GPSISRRHAVIVY----------DGGGRFYLIDLgSTNGTFVNGKRI 52
 
Name Accession Description Interval E-value
FHA_NBN cd22667
forkhead associated (FHA) domain found in nibrin and similar proteins; Nibrin (NBN), also ...
2-110 8.02e-47

forkhead associated (FHA) domain found in nibrin and similar proteins; Nibrin (NBN), also called cell cycle regulatory protein p95, or Nijmegen breakage syndrome protein 1 (NBS1), is a novel DNA double-strand break repair protein that is mutated in Nijmegen breakage syndrome. It is a component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. Nibrin modulates the DNA damage signal sensing by recruiting PI3/PI4-kinase family members ATM, ATR, and probably DNA-dependent protein kinase catalytic subunit (DNA-PKcs) to the DNA damage sites and activating their functions. It can also recruit MRE11 and RAD50 to the proximity of DSBs by an interaction with the histone H2AX. Nibrin also functions in telomere length maintenance by generating the 3' overhang which serves as a primer for telomerase dependent telomere elongation. Nibrin is a major player in the control of intra-S-phase checkpoint. This subfamily also includes Schizosaccharomyces pombe DNA repair and telomere maintenance protein Nbs1 and Arabidopsis thaliana AtNbs1. SpNbs1 is an FHA domain-containing protein required for DNA damage repair and S-phase DNA damage checkpoint. It is involved in telomere length maintenance and maintenance of chromatin structure. AtNbs1 is a component of MRN complex. It also functions in the very early stages of meiosis. The FHA domain is a small phosphopeptide recognition module.


Pssm-ID: 438719 [Multi-domain]  Cd Length: 108  Bit Score: 161.73  E-value: 8.02e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172   2 WKLLPAAGPAGgEPYRLLTGVEYVVGRKNCAILIENDQSISRNHAVLTANFSVTNLSQTDEIPVLTLKDNSKYGTFVNEE 81
Cdd:cd22667   1 WWLLSEQDGAG-TSYYLLPGGEYTVGRKDCDIIIVDDSSISRKHATLTVLHPEANLSDPDTRPELTLKDLSKYGTFVNGE 79
                        90       100
                ....*....|....*....|....*....
gi 33356172  82 KMQNGFSRTLKSGDGITFGVFGSKFRIEY 110
Cdd:cd22667  80 KLKGGSEVTLKDGDVITFGVLGSKFRVEY 108
BRCT_nibrin cd17741
BRCT domain of nibrin and similar proteins; Nibrin (NBN), also termed Nijmegen breakage ...
111-184 4.16e-36

BRCT domain of nibrin and similar proteins; Nibrin (NBN), also termed Nijmegen breakage syndrome protein 1 (NBS1), or cell cycle regulatory protein p95, is a novel DNA double-strand break repair protein that is mutated in Nijmegen breakage syndrome. It is a component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The BRCT (Breast Cancer Suppressor Protein BRCA1, carboxy-terminal) domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks. The Trp-X-X-X-Cys/Ser signature motif of the BRCT family is absent in this group.


Pssm-ID: 349372 [Multi-domain]  Cd Length: 74  Bit Score: 130.41  E-value: 4.16e-36
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33356172 111 EPLVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFLKAV 184
Cdd:cd17741   1 EPLVVCSSCLDSEEKKKLKQIIAKLGGKVVNEWTEECTHLVMSKIKVTVKVICALISGKPIVTPEYLDALLEAI 74
Nbs1_C pfam08599
DNA damage repair protein Nbs1; This C terminal region of the DNA damage repair protein Nbs1 ...
683-744 9.34e-34

DNA damage repair protein Nbs1; This C terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1.


Pssm-ID: 462531  Cd Length: 62  Bit Score: 123.18  E-value: 9.34e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 33356172   683 KNFKKFKKVTYPGAGKLPHIIGGSDLIAHHARKNTELEEWLRQEMEVQNQHAKEESLADDLF 744
Cdd:pfam08599   1 KNFKKFRKVAYPGAGGLPHIIGGSDLLVHNRGKNSELEEWLKQAMEEESQSAREESLADDLF 62
NIBRIN_BRCT_II pfam16508
Second BRCT domain on Nijmegen syndrome breakage protein;
217-325 3.92e-30

Second BRCT domain on Nijmegen syndrome breakage protein;


Pssm-ID: 465151  Cd Length: 118  Bit Score: 115.08  E-value: 3.92e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172   217 ERKQIFKGKTFIFLNAKQHKKLSSAVVFGGGEARL-------------ITEENEEEHNFFLAPGTCVVDTGITnsqtliP 283
Cdd:pfam16508   2 ERKTLFEGKTFVFLDQKQFERLSPPITNGGGKALLyevepgettpddfVRYVKNVGSELLTGKGVVVVRFRPK------K 75
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 33356172   284 DCQKKWIQSIMDMLQRQ-GLRPIPEAEIGLAVIFMTTKNYCDP 325
Cdd:pfam16508  76 SSNEEWIASFENELALRlGQRVIEQSEFLDAILHCSASKLCNP 118
FHA COG1716
Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms];
1-111 6.74e-12

Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms];


Pssm-ID: 441322 [Multi-domain]  Cd Length: 96  Bit Score: 62.28  E-value: 6.74e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172   1 MWKLLPAAGPAGGEPYRLlTGVEYVVGR-KNCAILIeNDQSISRNHAVLTA---NFSVTNLsqtdeipvltlkdNSKYGT 76
Cdd:COG1716   1 MARLVVLEGPLAGRRFPL-DGGPLTIGRaPDNDIVL-DDPTVSRRHARIRRdggGWVLEDL-------------GSTNGT 65
                        90       100       110
                ....*....|....*....|....*....|....*
gi 33356172  77 FVNEEKMQNgfSRTLKSGDGITFGvfGSKFRIEYE 111
Cdd:COG1716  66 FVNGQRVTE--PAPLRDGDVIRLG--KTELRFRLS 96
BRCT cd00027
C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains; The ...
113-179 2.32e-11

C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains; The BRCT (BRCA1 C-terminus) domain is found within many DNA damage repair and cell cycle checkpoint proteins. BRCT domains interact with each other forming homo/hetero BRCT multimers, but are also involved in BRCT-non-BRCT interactions and interactions within DNA strand breaks. BRCT tandem repeats bind to phosphopeptides; it has been shown that the repeats in human BRCA1 bind specifically to pS-X-X-F motifs, mediating the interaction between BRCA1 and the DNA helicase BACH1, or BRCA1 and CtIP, a transcriptional corepressor. It is assumed that BRCT repeats play similar roles in many signaling pathways associated with the response to DNA damage.


Pssm-ID: 349339 [Multi-domain]  Cd Length: 68  Bit Score: 59.68  E-value: 2.32e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 33356172 113 LVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTE 179
Cdd:cd00027   1 LVICFSGLDDEEREELKKLIEALGGKVSESLSSKVTHLIAKSPSGEKYYLAALAWGIPIVSPEWLLD 67
FHA cd00060
forkhead associated (FHA) domain superfamily; Forkhead-associated (FHA) domains are small ...
3-109 1.40e-10

forkhead associated (FHA) domain superfamily; Forkhead-associated (FHA) domains are small phosphopeptide recognition modules mostly found in eubacteria and eukaryotes. It is about 95-120 residues long that fold into an 11-stranded beta-sandwich. FHA domains can mediate the recognition of phosphorylated and non-phosphorylated substrates, as well as protein oligomerization. They specifically recognize threonine phosphorylation (pThr) accompanying activation of protein serine/threonine kinases. FHA domains show diverse ligand specificity. They may recognize the pTXXD motif, the pTXXI/L motif, and TQ clusters (singly and multiply phosphorylated). In eukaryotes, FHA superfamily members include forkhead-type transcription factors, as well as other signaling proteins, such as many regulatory proteins, kinases, phosphatases, motor proteins called kinesins, and metabolic enzymes. Many of them localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. FHA domains play important roles in human diseases, particularly in relation to DNA damage responses and cancers. In bacteria, FHA domain-containing proteins may participate in injection of viral proteins into host cells, transmembrane transporters, and cell division. FHA domain-containing proteins rarely include more than one copy of the domain. The only exception in eukaryotes is the checkpoint kinase Rad53 from Saccharomyces cerevisiae, which harbors two FHA domains (FHA1 and FHA2) flanking a central kinase domain. The two FHA domains recognize different phosphorylated targets and function independently from one another. In contrast, Mycobacterium tuberculosis ABC transporter Rv1747 contains two FHA domains but only one of them is essential for protein function.


Pssm-ID: 438714 [Multi-domain]  Cd Length: 92  Bit Score: 58.44  E-value: 1.40e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172   3 KLLPAAGPAGGEPYRLlTGVEYVVGR-KNCAILIeNDQSISRNHAVLTAN---FSVTNLSqtdeipvltlkdnSKYGTFV 78
Cdd:cd00060   1 RLIVLDGDGGGREFPL-TKGVVTIGRsPDCDIVL-DDPSVSRRHARIEVDgggVYLEDLG-------------STNGTFV 65
                        90       100       110
                ....*....|....*....|....*....|.
gi 33356172  79 NEEKMQNgfSRTLKSGDGITFGvfGSKFRIE 109
Cdd:cd00060  66 NGKRITP--PVPLQDGDVIRLG--DTTFRFE 92
FHA_TCF19 cd22685
forkhead associated (FHA) domain found in transcription factor 19 (TCF-19) and similar ...
1-100 5.39e-10

forkhead associated (FHA) domain found in transcription factor 19 (TCF-19) and similar proteins; TCF-19, also called transcription factor SC1, was identified as a putative trans-activating factor with expression beginning at the late G1-S boundary in dividing cells. It also functions as a novel islet factor necessary for proliferation and survival in the INS-1 beta cell line. It plays an important role in susceptibility to both Type 1 Diabetes Mellitus (T1DM) and Type 2 Diabetes Mellitus (T2DM); it has been suggested that it may positively impact beta cell mass under conditions of beta cell stress and increased insulin demand. TCF-19 contains an N-terminal fork head association domain (FHA), a proline rich region, and a C-terminal plant homeodomain (PHD) finger. The FHA domain may serve as a nuclear signaling domain or as a phosphoprotein binding domain. The proline rich region is a common characteristic of trans-activating factors. The PHD finger may allow TCF-19 to interact with chromatin via methylated histone H3.


Pssm-ID: 438737 [Multi-domain]  Cd Length: 130  Bit Score: 57.81  E-value: 5.39e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172   1 MWKLLPAAG-PAGGEPYRLLTG-VEYVVGRKN--CAILIENDQS---ISRNHAVLtanfSVTNlSQTDEIPVLtLKDNSK 73
Cdd:cd22685   5 LLRIGLSASrSEPRDLYTFRPDlCEYRIGRNPevCDVFLCSSQHpnlISREHAEI----HAER-DGNGNWKVL-IEDRST 78
                        90       100
                ....*....|....*....|....*..
gi 33356172  74 YGTFVNEEKMQNGFSRTLKSGDGITFG 100
Cdd:cd22685  79 NGTYVNDVRLQDGQRRELSDGDTITFG 105
FHA pfam00498
FHA domain; The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.
24-99 1.03e-09

FHA domain; The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.


Pssm-ID: 459831 [Multi-domain]  Cd Length: 66  Bit Score: 54.89  E-value: 1.03e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 33356172    24 YVVGR-KNCAILIeNDQSISRNHAVLTANFSvtnlsqtdeiPVLTLKD-NSKYGTFVNEEKMQNgFSRTLKSGDGITF 99
Cdd:pfam00498   1 VTIGRsPDCDIVL-DDPSVSRRHAEIRYDGG----------GRFYLEDlGSTNGTFVNGQRLGP-EPVRLKDGDVIRL 66
BRCT_MDC1_rpt1 cd17744
first BRCT domain of mediator of DNA damage checkpoint protein 1 (MDC1) and similar proteins; ...
132-183 1.95e-09

first BRCT domain of mediator of DNA damage checkpoint protein 1 (MDC1) and similar proteins; MDC1, also termed nuclear factor with BRCT domains 1 (NFBD1), is a nuclear chromatin-associated protein that is required for checkpoint mediated cell cycle arrest in response to DNA damage within both the S phase and G2/M phases of the cell cycle. It directly binds phosphorylated histone H2AX to regulate cellular responses to DNA double-strand breaks. MDC1 contains a forkhead-associated (FHA) domain and two BRCT domains, as well as an internal 41-amino acid repeat sequence. The family corresponds to the first BRCT domain.


Pssm-ID: 349375 [Multi-domain]  Cd Length: 72  Bit Score: 54.55  E-value: 1.95e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 33356172 132 ILQLGGFTVNNWtEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFLKA 183
Cdd:cd17744  18 IKKLGGSVVDSV-EDCTHLVTDKVRRTVKFLCALARGIPIVSPDWLEASIKA 68
FHA_MEK1-like cd22670
forkhead associated (FHA) domain found in Saccharomyces cerevisiae meiosis-specific serine ...
14-112 4.76e-09

forkhead associated (FHA) domain found in Saccharomyces cerevisiae meiosis-specific serine/threonine-protein kinase MEK1 and similar proteins; MEK1 (EC 2.7.11.1), also known as MRE4, is a meiosis-specific protein kinase required for chromosome synapsis and meiotic recombination. The recruitment and activation of MEK1 require the phosphorylation of the chromosome axis protein Hop1 at Thr318 (pT318), which is necessary for recognition by the MEK1 FHA domain. The FHA domain is a small phosphopeptide recognition module.


Pssm-ID: 438722 [Multi-domain]  Cd Length: 105  Bit Score: 54.54  E-value: 4.76e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172  14 EPYRLLTGVEYVVGRK-NCAILIeNDQSISRNHAVLtanFSVtnlsQTDE--IPVLTLKDNSKYGTFVNEEKMQNGFSRT 90
Cdd:cd22670  14 IVLPIYKNQVITIGRSpSCDIVI-NDPFVSRTHCRI---YSV----QFDEssAPLVYVEDLSSNGTYLNGKLIGRNNTVL 85
                        90       100
                ....*....|....*....|..
gi 33356172  91 LKSGDGITfgvFGSKFRIEYEP 112
Cdd:cd22670  86 LSDGDVIE---IAHSATFVYVH 104
FHA_Cep170 cd22704
forkhead associated (FHA) domain found in the centrosomal protein of 170 kDa protein (Cep170) ...
26-109 1.18e-07

forkhead associated (FHA) domain found in the centrosomal protein of 170 kDa protein (Cep170) family; The Cep170 family includes Cep170 and Cep170B. Cep170, also called Cep170A, KARP-1-binding protein, or KARP1-binding protein, is a protein that localizes to centrosomes as well as spindle microtubules and plays a role in microtubule organization and microtubule assembly. It is required for centriole subdistal appendage assembly. Cep170 is phosphorylated during M phase and interacts with Polo-like kinase 1 (Plk1). Cep170B, also called centrosomal protein 170B, plays a role in microtubule organization. The FHA domain is a small phosphopeptide recognition module.


Pssm-ID: 438756 [Multi-domain]  Cd Length: 102  Bit Score: 50.40  E-value: 1.18e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172  26 VGRKNCAILIENdQSISRNHAVLTANfsvtnlSQTDEipvLTLKD-NSKYGTFVNEEKMQNGFSRTLKSGDGITFGVFGS 104
Cdd:cd22704  21 VGREDCDLILQS-RSVDKQHAVITYD------QIDNE---FKIKDlGSLNGTFVNDSRIPEQTYITLKLGDSIRFGYDTN 90

                ....*
gi 33356172 105 KFRIE 109
Cdd:cd22704  91 VYRFE 95
FHA_FHAD1 cd22700
forkhead associated (FHA) domain found in forkhead-associated domain-containing protein 1 ...
26-111 1.50e-07

forkhead associated (FHA) domain found in forkhead-associated domain-containing protein 1 (FHAD1) and similar proteins; FHAD1, also called FHA domain-containing protein 1, is an uncharacterized FHA domain-containing protein. The FHA domain is a small phosphopeptide recognition module.


Pssm-ID: 438752 [Multi-domain]  Cd Length: 96  Bit Score: 49.95  E-value: 1.50e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172  26 VGRKNCAILIENdQSISRNHAVLtanfsvtNLSQTDEIPVLtlKD-NSKYGTFVNEEKMQNGFSRtLKSGDGITFGVFGS 104
Cdd:cd22700  20 IGREGCDLVLQS-PGVEEQHAVI-------EYSEQENCFVL--QDlNTAQGTYVNDCRIQNAAVR-LAPGDVLRFGFGGL 88

                ....*..
gi 33356172 105 KFRIEYE 111
Cdd:cd22700  89 PYELVVD 95
BRCT_PAXIP1_rpt5 cd17712
fifth BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins; PAXIP1, also ...
120-183 2.10e-07

fifth BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins; PAXIP1, also termed PAX transactivation activation domain-interacting protein (PTIP), is involved in DNA damage response and in transcriptional regulation through histone methyltransferase (HMT) complexes. It also facilitates ATM-mediated activation of p53 and promotes cellular resistance to ionizing radiation. PAXIP1 contains six BRCT repeats. This family corresponds to the fifth BRCT domain.


Pssm-ID: 349344  Cd Length: 75  Bit Score: 48.77  E-value: 2.10e-07
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33356172 120 LDVSGKTALNQAILQLGGFTVNNwTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFLKA 183
Cdd:cd17712   9 FDPVQVRKLTKKVTILGGEVVES-PQECTHLVAPKVSRTVKFLTAISVCKHIVTPEWLEESFKQ 71
BRCT_TopBP1_rpt7 cd17738
seventh BRCT domain of DNA topoisomerase 2-binding protein 1; TopBP1, also termed DNA ...
118-183 2.91e-07

seventh BRCT domain of DNA topoisomerase 2-binding protein 1; TopBP1, also termed DNA topoisomerase II-beta-binding protein 1, or DNA topoisomerase II-binding protein 1, functions in DNA replication and damage response. It binds double-stranded DNA breaks and nicks as well as single-stranded DNA. TopBP1 contains six copies of BRCT domain. The family corresponds to the seventh BRCT domain. The Trp-X-X-X-Cys/Ser signature motif of the BRCT family is missing in this group.


Pssm-ID: 349370 [Multi-domain]  Cd Length: 75  Bit Score: 48.33  E-value: 2.91e-07
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 33356172 118 SCLDVSGKTALNQAILQLGGFTVN--NWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFLKA 183
Cdd:cd17738   7 SGFSEDEKKELISIIEKLGGKVLDsdEFDPKCTHLICGKPSRSEKFLAACAAGKWILHPSYIEASAKA 74
FHA_RAD53-like_rpt2 cd22690
second forkhead associated (FHA) domain found in Saccharomyces cerevisiae Serine ...
18-99 7.03e-07

second forkhead associated (FHA) domain found in Saccharomyces cerevisiae Serine/threonine-protein kinase RAD53 and similar proteins; RAD53, also called CHEK2 homolog, or serine-protein kinase 1 (Spk1), is a nuclear protein kinase that phosphorylates proteins on serine, threonine, and tyrosine. It controls S-phase checkpoint as well as G1 and G2 DNA damage checkpoints and prevents entry into anaphase and mitotic exit after DNA damage via regulation of the Polo kinase CDC5. It may be involved in the phosphorylation of RPH1. RAD53 contains two FHA domains. This model corresponds to the second one. The FHA domain is a small phosphopeptide recognition module.


Pssm-ID: 438742 [Multi-domain]  Cd Length: 105  Bit Score: 48.06  E-value: 7.03e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172  18 LLTGVEYVVGRKNCAILIENDQSISRNHAVLTANFSVTNLsqtdeiPVLTLKDNSKYGTFVNEEKMQNGFSRTLKSGDGI 97
Cdd:cd22690  15 ELTQNTTFIGRSKDCDEEITDPRISKHHCIITRKRSGKGL------DDVYVTDTSTNGTFINNNRLGKGSQSLLQDGDEI 88

                ..
gi 33356172  98 TF 99
Cdd:cd22690  89 VL 90
BRCT_Bard1_rpt1 cd17734
first BRCT domain of BRCA1-associated RING domain protein 1 (Bard1) and similar proteins; ...
113-183 1.67e-06

first BRCT domain of BRCA1-associated RING domain protein 1 (Bard1) and similar proteins; Bard1, also termed BARD-1, or RING-type E3 ubiquitin transferase BARD1, is a critical factor in BRCA1-mediated tumor suppression and may also serve as a target for tumorigenic lesions in some human cancers. It associates with BRCA1 (breast cancer-1) to form a heterodimeric BRCA1/BARD1 complex that is responsible for maintaining genomic stability through nuclear functions involving DNA damage signaling and repair, transcriptional regulation, and cell cycle control. The BRCA1/BARD1 complex catalyzes autoubiquitination of BRCA1 and trans ubiquitination of other protein substrates. Its E3 ligase activity is dramatically reduced in the presence of UBX domain protein 1 (UBXN1). BARD-1 contains an N-terminal C3HC4-type RING-HC finger that binds BRCA1, and a C-terminal region with three ankyrin repeats and tandem BRCT domains that bind CstF-50 (cleavage stimulation factor) to modulate mRNA processing and RNAP II stability in response to DNA damage. The family corresponds to the first BRCT domain.


Pssm-ID: 349366  Cd Length: 80  Bit Score: 46.44  E-value: 1.67e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 33356172 113 LVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKV-----TIKTICALICGRPIVKPEYFTEFLKA 183
Cdd:cd17734   1 LVLLGSGLSSEQKKLLEKLAQLLKAKVVTEFSPEVTHVVVPADERgvcprTMKYLMGILAGKWIVSFEWVEACLKA 76
FHA_RNF8 cd22663
forkhead associated (FHA) domain found in RING finger protein 8 (RNF8) and similar proteins; ...
21-101 4.26e-05

forkhead associated (FHA) domain found in RING finger protein 8 (RNF8) and similar proteins; RNF8 is a telomere-associated E3 ubiquitin-protein ligase that plays an important role in DNA double-strand break (DSB) repair via histone ubiquitination. It is localized in the nucleus and interacts with class III E2s (UBE2E2, UbcH6, and UBE2E3), but not with other E2s (UbcH5, UbcH7, UbcH10, hCdc34, and hBendless). It recruits UBC13 for lysine 63-based self polyubiquitylation. Its deficiency causes neuronal pathology and cognitive decline, and its loss results in neuron degeneration. RNF8, together with RNF168, catalyzes a series of ubiquitylation events on substrates such as H2A and H2AX, with the H2AK13/15 ubiquitylation being particularly important for recruitment of repair factors p53-binding protein 1 (53BP1) or the RAP80-BRCA1 complex to sites of DSBs. Specially, RNF8 mediates the ubiquitination of gammaH2AX, and recruits 53BP1 and BRCA1 to DNA damage sites which promotes DNA damage response (DDR) and inhibits chromosomal instability. Moreover, RNF8 interacts with retinoid X receptor alpha (RXR alpha) and enhances its transcription-stimulating activity. It also regulates the rate of exit from mitosis and cytokinesis. RNF8 contains an N-terminal FHA domain, which is a small phosphopeptide recognition module.


Pssm-ID: 438715 [Multi-domain]  Cd Length: 110  Bit Score: 43.11  E-value: 4.26e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172  21 GVEYVVGRK---NCAILIENDQSISRNHAVLtanfsvtnlsQTDEIPVLTLKDN-SKYGTFVNEEKMQNGFSRTLKSGDG 96
Cdd:cd22663  20 GKEVTVGRGlgvTYQLVSTCPLMISRNHCVL----------KKNDEGQWTIKDNkSLNGVWVNGERIEPLKPYPLNEGDL 89

                ....*
gi 33356172  97 ITFGV 101
Cdd:cd22663  90 IQLGV 94
FHA_SNIP1_DDL-like cd22676
forkhead associated (FHA) domain found in Smad nuclear-interacting protein 1 (SNIP1), FHA ...
24-100 4.81e-05

forkhead associated (FHA) domain found in Smad nuclear-interacting protein 1 (SNIP1), FHA domain-containing protein DDL, and similar proteins; SNIP1 is an FHA domain-containing protein required for pre-mRNA splicing as a component of the spliceosome. It inhibits NF-kappaB signaling by competing for its binding to the C/H1 domain of CBP/p300 transcriptional co-activators. It is involved in microRNA (miRNA) biogenesis. SNIP1 is a regulator of the cell cycle and cyclin D1 expression and may be involved in cyclin-D1/CCND1 mRNA stability through the SNARP complex which associates with both the 3'end of the CCND1 gene and its mRNA. This family also includes Arabidopsis thaliana FHA domain-containing protein DDL and similar proteins. DDL, also called protein DAWDLE, is involved in the microRNA (miRNA) and short interfering RNA (siRNA) biogenesis. It may facilitate DCL1 to access or recognize primary miRNAs. DDL binds RNA non-specifically. The FHA domain is a small phosphopeptide recognition module.


Pssm-ID: 438728 [Multi-domain]  Cd Length: 111  Bit Score: 43.06  E-value: 4.81e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172  24 YVVGR--KNCAILIENdQSISRNHAVLtaNF-SVTNLSQTDEIPVLT--LKD-NSKYGTFVNEEKMQNGFSRTLKSGDGI 97
Cdd:cd22676  23 YLIGRdrRVADIPLDH-PSCSKQHAVI--QFrEVEKRNEGDVIENIRpyIIDlGSTNGTFLNGEKIEPRRYYELREKDVL 99

                ...
gi 33356172  98 TFG 100
Cdd:cd22676 100 KFG 102
BRCT_microcephalin_rpt2 cd17736
second BRCT domain of microcephalin and similar proteins; Microcephalin is a DNA damage ...
118-183 1.83e-04

second BRCT domain of microcephalin and similar proteins; Microcephalin is a DNA damage response protein involved in regulation of CHK1 and BRCA1. It has been implicated in chromosome condensation and DNA damage induced cellular responses. It may play a role in neurogenesis and regulation of the size of the cerebral cortex. Microcephalin contains three BRCT repeats. This family corresponds to the second repeat.


Pssm-ID: 349368 [Multi-domain]  Cd Length: 76  Bit Score: 40.65  E-value: 1.83e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 33356172 118 SCLDVSGKTALNQAILQLGGFTV-NNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFLKA 183
Cdd:cd17736   6 TSVHSEEQELLESVVKKLGGFRVeDSVTEKTTHVVVGSPRRTLNVLLGIARGCWILSPDWVLESLEA 72
FHA_Kanadaptin cd22677
forkhead associated (FHA) domain found in kanadaptin and similar proteins; Kanadaptin, also ...
14-100 3.83e-04

forkhead associated (FHA) domain found in kanadaptin and similar proteins; Kanadaptin, also called human lung cancer oncogene 3 protein (HLC-3), kidney anion exchanger adapter protein, or solute carrier family 4 anion exchanger member 1 adapter protein (SLC4A1AP), is a nuclear protein widely expressed in mammalian tissues. It was originally isolated as a kidney Cl-/HCO3- anion exchanger 1 (kAE1)-binding protein. It is a highly mobile nucleocytoplasmic shuttling and multilocalizing protein. Its role in mammalian cells remains unclear. It contains an FHA domain, which is a small phosphopeptide recognition module.


Pssm-ID: 438729 [Multi-domain]  Cd Length: 106  Bit Score: 40.23  E-value: 3.83e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172  14 EPYRLLTGVEYVVGR-KNCAILIENdQSISRNHAVLtaNFSVTNLSQTDEIPVLTLkdNSKYGTFVNEEKMQNGFSRTLK 92
Cdd:cd22677  14 ETLDLNGKSFYVFGRlPGCDVVLEH-PSISRYHAVL--QYRGDADDHDGGFYLYDL--GSTHGTFLNKQRIPPKQYYRLR 88

                ....*...
gi 33356172  93 SGDGITFG 100
Cdd:cd22677  89 VGHVLKFG 96
FHA_EspA-like cd22698
forkhead associated (FHA) domain found in Myxococcus xanthus EspA and similar proteins; EspA ...
9-100 8.69e-04

forkhead associated (FHA) domain found in Myxococcus xanthus EspA and similar proteins; EspA is a histidine protein kinase with a fork head-associated (FHA) domain at the N-terminus and a receiver domain at the C-terminus. It functions as an inhibitor of sporulation during early fruiting body development while cells are aggregating into raised mounds. EspA is part of a two-component signal transduction system that regulates the timing of sporulation initiation. The FHA domain is a small phosphopeptide recognition module.


Pssm-ID: 438750 [Multi-domain]  Cd Length: 93  Bit Score: 38.93  E-value: 8.69e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172   9 GPAGGEPYRLLTGvEYVVGRKNCAILIENDQSISRNHAVLTANFSVTNLSQTDeipvltlkdnSKYGTFVNEEKMQngfS 88
Cdd:cd22698   9 GSEEGKDYELDQD-EFTIGRSSNNDIRLNDHSVSRHHARIVRQGDKCNLTDLG----------STNGTFLNGIRVG---T 74
                        90
                ....*....|..
gi 33356172  89 RTLKSGDGITFG 100
Cdd:cd22698  75 HELKHGDRIQLG 86
FHA_Cep170A cd22724
forkhead associated (FHA) domain found in centrosomal protein of 170 kDa (Cep170) and similar ...
11-100 8.73e-04

forkhead associated (FHA) domain found in centrosomal protein of 170 kDa (Cep170) and similar proteins; Cep170, also called Cep170A, KARP-1-binding protein, or KARP1-binding protein, is a protein that localizes to centrosomes as well as spindle microtubules and plays a role in microtubule organization and microtubule assembly. It is required for centriole subdistal appendage assembly. Cep170 is phosphorylated during M phase and interacts with Polo-like kinase 1 (Plk1). The FHA domain is a small phosphopeptide recognition module.


Pssm-ID: 438776 [Multi-domain]  Cd Length: 106  Bit Score: 39.57  E-value: 8.73e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172  11 AGGEPYRLLTGVEYVvGRKNCAILIENdQSISRNHAVLtaNFSvtnlSQTDEIPVLTLkdNSKYGTFVNEEKMQNGFSRT 90
Cdd:cd22724  11 SGGTRHRLPREMIFV-GRDDCELMLQS-RSVDKQHAVI--NYD----ASTDEHKVKDL--GSLNGTFVNDVRIPEQTYIT 80
                        90
                ....*....|
gi 33356172  91 LKSGDGITFG 100
Cdd:cd22724  81 LKLDDKLRFG 90
FHA_Cep170B cd22725
forkhead associated (FHA) domain found in centrosomal protein of 170 kDa protein B (Cep170B) ...
26-100 1.33e-03

forkhead associated (FHA) domain found in centrosomal protein of 170 kDa protein B (Cep170B) and similar proteins; Cep170B, also called centrosomal protein 170B, plays a role in microtubule organization. The FHA domain is a small phosphopeptide recognition module.


Pssm-ID: 438777 [Multi-domain]  Cd Length: 106  Bit Score: 38.75  E-value: 1.33e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 33356172  26 VGRKNCAILIENdQSISRNHAVLTANfsvtnlSQTDEIPVLTLkdNSKYGTFVNEEKMQNGFSRTLKSGDGITFG 100
Cdd:cd22725  25 VGREDCELMLQS-RSVDKQHAVINYD------QDTDEHWVKDL--GSLNGTFVNDVRIPDQKYITLKLNDVIRFG 90
FHA_Rv1747-like_rpt1 cd22694
first forkhead associated (FHA) domain found in Mycobacterium tuberculosis ABC transporter ...
12-100 3.00e-03

first forkhead associated (FHA) domain found in Mycobacterium tuberculosis ABC transporter ATP-binding/permease protein Rv1747 and similar proteins; Rv1747 is a putative ATP-binding cassette (ABC) transporter involved in the translocation of an unknown substrate across the membrane. It is required for normal virulent infection by M. tuberculosis. Rv1747 has a cytoplasmic regulatory module consisting of two pThr-interacting forkhead-associated (FHA) domains connected by a conformationally disordered linker with two phospho-acceptor threonines (pThr). Recruitment and phosphorylation of Rv1747 depend on the interaction between its two non-redundant FHA domains and the autophosphorylated form of serine/threonine protein kinase PknF. This model corresponds to the first FHA domain. The FHA domain is a small phosphopeptide recognition module.


Pssm-ID: 438746 [Multi-domain]  Cd Length: 93  Bit Score: 37.69  E-value: 3.00e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172  12 GGEPYRLLTGVEYVVGRKNCAILIENDQSISRNHAVLTanfsvtnlSQTDEipvLTLKD-NSKYGTFVNEEKMQngfSRT 90
Cdd:cd22694   6 PGGELRFDPGSSVRIGRDPDADVRLDDPRVSRRHALLE--------FDGDG---WVYTDlGSRNGTYLNGRRVQ---QVK 71
                        90
                ....*....|
gi 33356172  91 LKSGDGITFG 100
Cdd:cd22694  72 LSDGTRVRLG 81
FHA smart00240
Forkhead associated domain; Found in eukaryotic and prokaryotic proteins. Putative nuclear ...
24-83 5.78e-03

Forkhead associated domain; Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.


Pssm-ID: 214578 [Multi-domain]  Cd Length: 52  Bit Score: 35.62  E-value: 5.78e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 33356172     24 YVVGR--KNCAILIEnDQSISRNHAVLTAnfsvtnlsqtDEIPVLTLKDN-SKYGTFVNEEKM 83
Cdd:smart00240   1 VTIGRssEDCDIQLD-GPSISRRHAVIVY----------DGGGRFYLIDLgSTNGTFVNGKRI 52
FHA_CHFR cd22672
forkhead associated (FHA) domain found in checkpoint with forkhead and RING finger domains ...
2-99 6.96e-03

forkhead associated (FHA) domain found in checkpoint with forkhead and RING finger domains protein (CHFR); CHFR, also called RING finger protein 196 (RNF196), is a checkpoint protein that delays entry into mitosis in response to stress. It functions as an E3 ubiquitin ligase that ubiquitinates and degrades its target proteins, such as Aurora-A, Plk1, Kif22 and PARP-1, which are critical for proper mitotic transitions. It also plays an important role in cell cycle progression and tumor suppression and is negatively regulated by SUMOylation-mediated proteasomal ubiquitylation. Moreover, CHFR is involved in the early stage of the DNA damage response, which mediates the crosstalk between ubiquitination and poly-ADP-ribosylation. CHFR contains a fork head associated-(FHA) domain and a RING-HC finger. The CHFR FHA domain has been crystallized as a segment-swapped dimer. The FHA domain is a small phosphopeptide recognition module.


Pssm-ID: 438724 [Multi-domain]  Cd Length: 108  Bit Score: 36.89  E-value: 6.96e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172   2 WKLLPAAGPAGGEPYRLLtGVEYVVGR-KNCAILIENDQSISRNHAVLtanfsvtnlsQTDEIPVLTLKDNSKYGTFVNE 80
Cdd:cd22672   2 WGQLVRLTEESSPPILLR-KDEFTIGRaKDCDLSFPGNKLVSGDHCKI----------IRDEKGQVWLEDTSTNGTLVNK 70
                        90
                ....*....|....*....
gi 33356172  81 EKMQNGFSRTLKSGDGITF 99
Cdd:cd22672  71 VKVVKGQKVELKHGDVIYL 89
Yop-YscD_cpl pfam16697
Inner membrane component of T3SS, cytoplasmic domain; Yop-YscD-cpl is the cytoplasmic domain ...
9-112 7.31e-03

Inner membrane component of T3SS, cytoplasmic domain; Yop-YscD-cpl is the cytoplasmic domain of Yop proteins like YscD from Proteobacteria. YscD forms part of the inner membrane component of the bacterial type III secretion injectosome apparatus.


Pssm-ID: 465238 [Multi-domain]  Cd Length: 94  Bit Score: 36.47  E-value: 7.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33356172     9 GPAGGEPYRLlTGVEYVVGR-KNCAILIeNDQSISRNHAVLTANFSVtnlsqtdeipVLTLKDNSKYGTFVNEEKmQNGF 87
Cdd:pfam16697   5 GPHAGAEFPL-EGGRYRIGSdPDCDIVL-SDKEVSRVHLKLEVDDEG----------WRLDDLGSGNGTLVNGQR-VTEL 71
                          90       100
                  ....*....|....*....|....*
gi 33356172    88 SRTLKSGDGITFGVFgsKFRIEYEP 112
Cdd:pfam16697  72 GIALRPGDRIELGQT--EFCLVPAD 94
FHA_SLMAP cd22679
forkhead associated (FHA) domain found in sarcolemmal membrane-associated protein (SLMAP) and ...
41-101 7.79e-03

forkhead associated (FHA) domain found in sarcolemmal membrane-associated protein (SLMAP) and similar proteins; SLMAP, also called sarcolemmal-associated protein (SLAP), is a tail-anchored protein involved in fundamental cellular processes, such as myoblast fusion, cell cycle progression, and chromosomal inheritance. It is a cardiac membrane protein that plays an important role in E-C coupling and the adrenergic response of the heart. Overexpression of the SLMAP gene has been associated with diabetes and endothelial dysfunction of macro- and micro-blood vessels. SLMAP contains an N-terminal FHA domain, which is a small phosphopeptide recognition module.


Pssm-ID: 438731 [Multi-domain]  Cd Length: 126  Bit Score: 37.25  E-value: 7.79e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 33356172  41 ISRNHAVLTAnfsvTNLSqtdeipvLTLKD-NSKYGTFVNEEKMQNGFS----RTLKSGDGITFGV 101
Cdd:cd22679  49 LSRNHALLWY----DDGK-------FYLQDtKSSNGTFVNNQRLSKGSEesepRELHSGDIVQFGV 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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