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Conserved domains on  [gi|1027398269|gb|AND83260|]
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outer membrane protein assembly factor, partial [uncultured Arsenophonus sp.]

Protein Classification

undecaprenyl diphosphate synthase family protein( domain architecture ID 10000255)

undecaprenyl diphosphate synthase (UPPS) family protein catalyzes consecutive condensation reactions of farnesyl diphosphate (FPP) with specific numbers of isopentenyl diphosphate (IPP) to form long-chain polyprenyl diphosphates, similar to UPPS that catalyzes chain elongation of FPP by eight IPP to form the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis

Gene Ontology:  GO:0016765|GO:0000287|GO:0002094
PubMed:  22471620

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UppS COG0020
Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];
1-190 2.24e-112

Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];


:

Pssm-ID: 439791  Cd Length: 248  Bit Score: 320.46  E-value: 2.24e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   1 AVENEIQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTG 80
Cdd:COG0020    55 CAELGIKYLTLYAFSTENWKRPKEEVSFLMGLLREYLRRELDELHKNNVRVRVIGDRSRLPESLQEAIEEAEELTKNNTG 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  81 LQLNIAANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYF 160
Cdd:COG0020   135 LTLNIALNYGGRWEIVDAVRKIARDVAAGELDPEDIDEETISRYLYTADLPDPDLLIRTSGEQRISNFLLWQLAYAELYF 214

                         170       180       190
                  ....*....|....*....|....*....|
gi 1027398269 161 TDVLWPDFDEEAFKSAIVAFNQRERRFGNT 190
Cdd:COG0020   215 TDVLWPDFDKEDLLRAIRDYQRRERRFGGT 244
 
Name Accession Description Interval E-value
UppS COG0020
Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];
1-190 2.24e-112

Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];


Pssm-ID: 439791  Cd Length: 248  Bit Score: 320.46  E-value: 2.24e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   1 AVENEIQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTG 80
Cdd:COG0020    55 CAELGIKYLTLYAFSTENWKRPKEEVSFLMGLLREYLRRELDELHKNNVRVRVIGDRSRLPESLQEAIEEAEELTKNNTG 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  81 LQLNIAANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYF 160
Cdd:COG0020   135 LTLNIALNYGGRWEIVDAVRKIARDVAAGELDPEDIDEETISRYLYTADLPDPDLLIRTSGEQRISNFLLWQLAYAELYF 214

                         170       180       190
                  ....*....|....*....|....*....|
gi 1027398269 161 TDVLWPDFDEEAFKSAIVAFNQRERRFGNT 190
Cdd:COG0020   215 TDVLWPDFDKEDLLRAIRDYQRRERRFGGT 244
PRK10240 PRK10240
(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase;
1-196 6.42e-107

(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase;


Pssm-ID: 182326  Cd Length: 229  Bit Score: 306.14  E-value: 6.42e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   1 AVENEIQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTG 80
Cdd:PRK10240   33 AANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTG 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  81 LQLNIAANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYF 160
Cdd:PRK10240  113 LTLNIAANYGGRWDIVQGVRQLAEQVQQGNLQPDQIDEEMLNQHICMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYF 192

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1027398269 161 TDVLWPDFDEEAFKSAIVAFNQRERRFGNTEPDDIN 196
Cdd:PRK10240  193 TDVLWPDFDEQDFEGALNAFANRERRFGGTEPGDET 228
Prenyltransf pfam01255
Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family ...
 1-188 4.69e-97

Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.


Pssm-ID: 460138  Cd Length: 220  Bit Score: 280.79  E-value: 4.69e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   1 AVENEIQSLTLYAFSSENWNRPETEVSALMELF-TWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNT 79
Cdd:pfam01255  34 CLELGIKYLTLYAFSTENWKRPKEEVDALMELLkEEYLRRELPELHKNGVRVRVIGDLSLLPEDLQEAIEEAEEATKNNT 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  80 GLQLNIAANYGGRWDITHAMGLIAEKIKAgsLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFY 159
Cdd:pfam01255 114 GLTLNIALNYGGRDEIVDAVRKIVKEGKK--LDPEDIDEELISSHLYTAGLPDPDLLIRTSGEQRLSNFLLWQSAYSELY 191

                         170       180
                  ....*....|....*....|....*....
gi 1027398269 160 FTDVLWPDFDEEAFKSAIVAFNQRERRFG 188
Cdd:pfam01255 192 FTDVLWPDFRKEDLLRAIRDYQRRERRFG 220
Cis_IPPS cd00475
Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) ...
 1-182 1.36e-95

Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.


Pssm-ID: 259850  Cd Length: 219  Bit Score: 276.95  E-value: 1.36e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   1 AVENEIQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTG 80
Cdd:cd00475    38 CLELGIKYLTLYAFSTENWKRPKEEVDALMKLLREYLEKELEELHKNGVRLRVIGDLSLLPEDLREAIEEAEEATKNNTG 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  81 LQLNIAANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYF 160
Cdd:cd00475   118 LTLNIALNYGGRDEIVRAVRKIARDVKAGELDPEDITEELISKHLYTADLPDPDLLIRTSGEQRLSNFLLWQSAYAELYF 197

                         170       180
                  ....*....|....*....|..
gi 1027398269 161 TDVLWPDFDEEAFKSAIVAFNQ 182
Cdd:cd00475   198 TDVLWPDFRKEDLLRAILDYQR 219
uppS TIGR00055
undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule ...
 1-188 1.18e-88

undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule that in bacteria is used a carrier in synthesizing cell wall components. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 129165  Cd Length: 226  Bit Score: 259.64  E-value: 1.18e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   1 AVENEIQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTG 80
Cdd:TIGR00055  39 CANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVKELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTD 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  81 LQLNIAANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYF 160
Cdd:TIGR00055 119 FTLNIAFNYGGRNEILHAVKQIAEKVKSGKLLPEDIDEETLNKHLYTANLPPVDLLIRTSGEMRISNFLLWQSSYAELYF 198

                         170       180
                  ....*....|....*....|....*...
gi 1027398269 161 TDVLWPDFDEEAFKSAIVAFNQRERRFG 188
Cdd:TIGR00055 199 TDILWPDFDPQDFELAILDFQFRHRRFG 226
 
Name Accession Description Interval E-value
UppS COG0020
Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];
1-190 2.24e-112

Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];


Pssm-ID: 439791  Cd Length: 248  Bit Score: 320.46  E-value: 2.24e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   1 AVENEIQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTG 80
Cdd:COG0020    55 CAELGIKYLTLYAFSTENWKRPKEEVSFLMGLLREYLRRELDELHKNNVRVRVIGDRSRLPESLQEAIEEAEELTKNNTG 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  81 LQLNIAANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYF 160
Cdd:COG0020   135 LTLNIALNYGGRWEIVDAVRKIARDVAAGELDPEDIDEETISRYLYTADLPDPDLLIRTSGEQRISNFLLWQLAYAELYF 214

                         170       180       190
                  ....*....|....*....|....*....|
gi 1027398269 161 TDVLWPDFDEEAFKSAIVAFNQRERRFGNT 190
Cdd:COG0020   215 TDVLWPDFDKEDLLRAIRDYQRRERRFGGT 244
PRK10240 PRK10240
(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase;
1-196 6.42e-107

(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase;


Pssm-ID: 182326  Cd Length: 229  Bit Score: 306.14  E-value: 6.42e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   1 AVENEIQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTG 80
Cdd:PRK10240   33 AANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTG 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  81 LQLNIAANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYF 160
Cdd:PRK10240  113 LTLNIAANYGGRWDIVQGVRQLAEQVQQGNLQPDQIDEEMLNQHICMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYF 192

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1027398269 161 TDVLWPDFDEEAFKSAIVAFNQRERRFGNTEPDDIN 196
Cdd:PRK10240  193 TDVLWPDFDEQDFEGALNAFANRERRFGGTEPGDET 228
Prenyltransf pfam01255
Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family ...
 1-188 4.69e-97

Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.


Pssm-ID: 460138  Cd Length: 220  Bit Score: 280.79  E-value: 4.69e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   1 AVENEIQSLTLYAFSSENWNRPETEVSALMELF-TWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNT 79
Cdd:pfam01255  34 CLELGIKYLTLYAFSTENWKRPKEEVDALMELLkEEYLRRELPELHKNGVRVRVIGDLSLLPEDLQEAIEEAEEATKNNT 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  80 GLQLNIAANYGGRWDITHAMGLIAEKIKAgsLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFY 159
Cdd:pfam01255 114 GLTLNIALNYGGRDEIVDAVRKIVKEGKK--LDPEDIDEELISSHLYTAGLPDPDLLIRTSGEQRLSNFLLWQSAYSELY 191

                         170       180
                  ....*....|....*....|....*....
gi 1027398269 160 FTDVLWPDFDEEAFKSAIVAFNQRERRFG 188
Cdd:pfam01255 192 FTDVLWPDFRKEDLLRAIRDYQRRERRFG 220
Cis_IPPS cd00475
Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) ...
 1-182 1.36e-95

Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.


Pssm-ID: 259850  Cd Length: 219  Bit Score: 276.95  E-value: 1.36e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   1 AVENEIQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTG 80
Cdd:cd00475    38 CLELGIKYLTLYAFSTENWKRPKEEVDALMKLLREYLEKELEELHKNGVRLRVIGDLSLLPEDLREAIEEAEEATKNNTG 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  81 LQLNIAANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYF 160
Cdd:cd00475   118 LTLNIALNYGGRDEIVRAVRKIARDVKAGELDPEDITEELISKHLYTADLPDPDLLIRTSGEQRLSNFLLWQSAYAELYF 197

                         170       180
                  ....*....|....*....|..
gi 1027398269 161 TDVLWPDFDEEAFKSAIVAFNQ 182
Cdd:cd00475   198 TDVLWPDFRKEDLLRAILDYQR 219
PRK14836 PRK14836
undecaprenyl pyrophosphate synthase; Provisional
 1-190 2.45e-93

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237831  Cd Length: 253  Bit Score: 272.71  E-value: 2.45e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   1 AVENEIQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTG 80
Cdd:PRK14836   54 CLEKGIEMLTLFAFSSENWLRPADEVSALMELFLKALDREVDKLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTR 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  81 LQLNIAANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYF 160
Cdd:PRK14836  134 LILSLAVSYGGRWDIVTAARALAREVAAGKLAPDEIDEALLAQHLALADLPEPDLFIRTSGELRISNFLLWQLAYTELYF 213

                         170       180       190
                  ....*....|....*....|....*....|
gi 1027398269 161 TDVLWPDFDEEAFKSAIVAFNQRERRFGNT 190
Cdd:PRK14836  214 TDTLWPDFDAQELQQALEDYASRERRFGKT 243
uppS TIGR00055
undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule ...
 1-188 1.18e-88

undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule that in bacteria is used a carrier in synthesizing cell wall components. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 129165  Cd Length: 226  Bit Score: 259.64  E-value: 1.18e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   1 AVENEIQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTG 80
Cdd:TIGR00055  39 CANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVKELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTD 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  81 LQLNIAANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYF 160
Cdd:TIGR00055 119 FTLNIAFNYGGRNEILHAVKQIAEKVKSGKLLPEDIDEETLNKHLYTANLPPVDLLIRTSGEMRISNFLLWQSSYAELYF 198

                         170       180
                  ....*....|....*....|....*...
gi 1027398269 161 TDVLWPDFDEEAFKSAIVAFNQRERRFG 188
Cdd:TIGR00055 199 TDILWPDFDPQDFELAILDFQFRHRRFG 226
PRK14830 PRK14830
undecaprenyl pyrophosphate synthase; Provisional
 6-188 7.12e-86

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 184840  Cd Length: 251  Bit Score: 253.65  E-value: 7.12e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   6 IQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTGLQLNI 85
Cdd:PRK14830   67 VKVLTLYAFSTENWKRPKDEVKFLMNLPVEFLDKFVPELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNF 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  86 AANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYFTDVLW 165
Cdd:PRK14830  147 ALNYGGRAEIVSAVKEIAKDVLDGKLNPEDITEELISNYLMTKGLPDPDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLW 226

                         170       180
                  ....*....|....*....|...
gi 1027398269 166 PDFDEEAFKSAIVAFNQRERRFG 188
Cdd:PRK14830  227 PDFDEEELLKAIKDYQSRQRRFG 249
PRK14831 PRK14831
undecaprenyl pyrophosphate synthase; Provisional
 6-188 4.17e-75

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 184841  Cd Length: 249  Bit Score: 225.98  E-value: 4.17e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   6 IQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTGLQLNI 85
Cdd:PRK14831   65 IGALTAYAFSTENWSRPLEEVNFLMTLFERVLRRELEELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNV 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  86 AANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYFTDVLW 165
Cdd:PRK14831  145 CTNYGGRQEIVQAARAIAQQVQQGELDPSEIDENLFESELYTAGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLW 224

                         170       180
                  ....*....|....*....|...
gi 1027398269 166 PDFDEEAFKSAIVAFNQRERRFG 188
Cdd:PRK14831  225 PDFDRDEFHKALLDYQSRERRFG 247
PRK14834 PRK14834
isoprenyl transferase;
1-192 2.59e-70

isoprenyl transferase;


Pssm-ID: 237829  Cd Length: 249  Bit Score: 213.85  E-value: 2.59e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   1 AVENEIQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTG 80
Cdd:PRK14834   54 AGELGIGYLTLFAFSSENWSRPASEVSDLFGLLRLFIRRDLAELHRNGVRVRVIGERAGLEADICALLNEAEELTRNNTG 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  81 LQLNIAANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYF 160
Cdd:PRK14834  134 LNLVIAFNYGSRDEIARAVRRLAREVAEGRLDPASIDAETISANLDTADIPDPDLIIRTSGEQRLSNFLLWQAAYSELLF 213

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1027398269 161 TDVLWPDFDEEAFKSAIVAFNQRERRFGNTEP 192
Cdd:PRK14834  214 VPIHWPDFDKAALEAAIEEYARRERRFGGLAA 245
PRK14838 PRK14838
isoprenyl transferase;
6-191 7.51e-65

isoprenyl transferase;


Pssm-ID: 184846  Cd Length: 242  Bit Score: 199.71  E-value: 7.51e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   6 IQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNihNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTGLQLNI 85
Cdd:PRK14838   55 VKFLTLYTFSTENWNRPSDEVAALMSLLLDSIEEETFMKN--NIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVL 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  86 AANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYFTDVLW 165
Cdd:PRK14838  133 ALSYSSRWEITEATRQIATLVQNGELNPEEITEESISEHLTTNFMPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFW 212

                         170       180
                  ....*....|....*....|....*.
gi 1027398269 166 PDFDEEAFKSAIVAFNQRERRFGNTE 191
Cdd:PRK14838  213 PDFDEEELCKAIYDYQKRERRFGKTS 238
PRK14832 PRK14832
undecaprenyl pyrophosphate synthase; Provisional
 6-191 1.70e-64

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237827  Cd Length: 253  Bit Score: 199.46  E-value: 1.70e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   6 IQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTGLQLNI 85
Cdd:PRK14832   63 IKALTAYAFSTENWQRPIEEVDFLMLLFERLLRRELAQMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTV 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  86 AANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYFTDVLW 165
Cdd:PRK14832  143 AVNYGSRNEITRACRQVAELVQQGKLSADAVNEQLVEQHLYTADTPPPDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILW 222

                         170       180
                  ....*....|....*....|....*.
gi 1027398269 166 PDFDEEAFKSAIVAFNQRERRFGNTE 191
Cdd:PRK14832  223 PDFDRAAFHQALLSYQKRDRRFGQVK 248
PRK14833 PRK14833
di-trans,poly-cis-decaprenylcistransferase;
6-191 1.59e-56

di-trans,poly-cis-decaprenylcistransferase;


Pssm-ID: 237828  Cd Length: 233  Bit Score: 178.47  E-value: 1.59e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   6 IQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTGLQLNI 85
Cdd:PRK14833   49 LECLTLYAFSTENWKRPKSEVDFLMKLLKKYLKDERSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFKGFTQVL 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  86 AANYGGRWDITHAMGLIAEKIKAGSLLPEnINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYFTDVLW 165
Cdd:PRK14833  129 ALNYGSKDEISRAFKKLLESPPSHIGELE-SLEEEISNCLDTADLPEVDLLIRTGGEMRLSNFLLWQSSYAELFFTPILW 207

                         170       180
                  ....*....|....*....|....*.
gi 1027398269 166 PDFDEEAFKSAIVAFNQRERRFGNTE 191
Cdd:PRK14833  208 PDFTPKDLENIISDFYKRVRKFGGLK 233
PRK14839 PRK14839
di-trans,poly-cis-decaprenylcistransferase;
6-192 4.56e-52

di-trans,poly-cis-decaprenylcistransferase;


Pssm-ID: 237832  Cd Length: 239  Bit Score: 167.24  E-value: 4.56e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   6 IQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTGLQLNI 85
Cdd:PRK14839   54 IGTLTLYAFSSDNWRRPAAEVGGLMRLLRAYLRNETERLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDRLHLRI 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  86 AANYGGRWDITHAmgliaekiKAGSLLPENINEDTVNEFISlHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYFTDVLW 165
Cdd:PRK14839  134 AVDYSARDAILAA--------AAKALGPEGLSREAFSDLLT-GDGGDVDLLIRTGGEKRLSDFLLWESAYAELHFTDRMW 204

                         170       180
                  ....*....|....*....|....*..
gi 1027398269 166 PDFDEEAFKSAIVAFNQRERRFGNTEP 192
Cdd:PRK14839  205 PDFGADDLAAAVADFHGRERRFGGLPA 231
PRK14840 PRK14840
undecaprenyl pyrophosphate synthase; Provisional
 6-188 1.92e-48

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173301  Cd Length: 250  Bit Score: 158.08  E-value: 1.92e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   6 IQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTGLQLNI 85
Cdd:PRK14840   67 IEVLTLFAFSTENFSRSKEEVAELFSLFNSQLDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVL 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  86 AANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYFTDVLW 165
Cdd:PRK14840  147 AINYGGKDELVRAFKKLHQDLANKKISSDDISEELISSYLDTSGLPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDVLW 226

                         170       180
                  ....*....|....*....|...
gi 1027398269 166 PDFDEEAFKSAIVAFNQRERRFG 188
Cdd:PRK14840  227 PDFTPNDLLEAIKTYQQRSRRGG 249
PRK14827 PRK14827
undecaprenyl pyrophosphate synthase; Provisional
 1-188 1.90e-46

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173288  Cd Length: 296  Bit Score: 154.34  E-value: 1.90e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   1 AVENEIQSLTLYAFSSENWNRPETEVSALMElftwFLDDEVK----NLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTA 76
Cdd:PRK14827  107 AIELGIKWLSLYAFSTENWKRSPEEVRFLMG----FNRDVVRrrrdNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTK 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  77 NNTGLQLNIAANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYA 156
Cdd:PRK14827  183 SNDVITINYCVNYGGRTEITEATREIAREAAAGRLNPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYA 262

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1027398269 157 EFYFTDVLWPDFDEEAFKSAIVAFNQRERRFG 188
Cdd:PRK14827  263 EYIFQDKLWPDYDRRDLWAACEEYASRNRRFG 294
PRK14842 PRK14842
undecaprenyl pyrophosphate synthase; Provisional
 1-191 3.38e-45

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173303  Cd Length: 241  Bit Score: 149.75  E-value: 3.38e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   1 AVENEIQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTG 80
Cdd:PRK14842   48 SLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEFIETRLDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKKNKN 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  81 LQLNIAANYGGRWDITHAMG-LIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFY 159
Cdd:PRK14842  128 LTVNFCLNYGSHDELLRAAQeVFLARKAKKVTLEKPLKEKEFEKFLYTSPLPPVDLLIRTAGEQRLSNFLLWQSAYAELY 207

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1027398269 160 FTDVLWPDFDEEAFKSAIVAFNQRERRFGNTE 191
Cdd:PRK14842  208 FTDTLWPDFDKNSLVDSLKWYETRTRKFGGLL 239
PRK14829 PRK14829
undecaprenyl pyrophosphate synthase; Provisional
 1-190 3.94e-45

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237826  Cd Length: 243  Bit Score: 149.55  E-value: 3.94e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   1 AVENEIQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTG 80
Cdd:PRK14829   54 AIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSRDVIHRRREQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTT 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  81 LQLNIAANYGGRWDITHAMGLIAEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYF 160
Cdd:PRK14829  134 MDLVFCVNYGGRAEIADAAAAIAREVRDGKISGDRVTEKMISDHLYNPDMPDVDLFLRTSGEQRTSNFLLWQSAYAELDF 213

                         170       180       190
                  ....*....|....*....|....*....|
gi 1027398269 161 TDVLWPDFDEEAFKSAIVAFNQRERRFGNT 190
Cdd:PRK14829  214 VPKLFPDFGRDDLWAAIDEYAHRDRRFGGV 243
PRK14837 PRK14837
undecaprenyl pyrophosphate synthase; Provisional
 6-188 5.07e-43

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173298  Cd Length: 230  Bit Score: 143.81  E-value: 5.07e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   6 IQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTGLQLNI 85
Cdd:PRK14837   51 IKYLSLYVFSTENWNRTDSEIEHLMFLIADYLSSEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNL 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  86 AANYGGRWDITHAMgliaEKIKAGSLLPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYFTDVLW 165
Cdd:PRK14837  131 AINYGGRNEIVRAV----KKFLSSGLDLETLNENVFSKFLDNPELPDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLW 206

                         170       180
                  ....*....|....*....|...
gi 1027398269 166 PDFDEEAFKSAIVAFNQRERRFG 188
Cdd:PRK14837  207 PEYYVNHYSKDLECFKNRKRNFG 229
PRK14841 PRK14841
undecaprenyl pyrophosphate synthase; Provisional
 1-188 1.89e-42

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173302  Cd Length: 233  Bit Score: 142.44  E-value: 1.89e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   1 AVENEIQSLTLYAFSSENWNRPETEVSALMELFTWFLDDEVKNLNIHNVKLTIIGDISRFKTKLQNRIKHAVDLTANNTG 80
Cdd:PRK14841   43 SLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDR 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  81 LQLNIAANYGGRWDITHAMGLIAEKIKAGSLLpeNINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAEFYF 160
Cdd:PRK14841  123 MTLVIAFNYGGRREILDAVESILKDVSQGKKI--ELTEETFRQYLYLPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYF 200

                         170       180
                  ....*....|....*....|....*...
gi 1027398269 161 TDVLWPDFDEEAFKSAIVAFNQRERRFG 188
Cdd:PRK14841  201 FKKLWPDFTKRDFLRAIESYSKRERRFG 228
PRK14835 PRK14835
isoprenyl transferase;
2-188 1.85e-41

isoprenyl transferase;


Pssm-ID: 237830  Cd Length: 275  Bit Score: 141.13  E-value: 1.85e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   2 VENEIQSLTLYAFSSENWNRPETEVSALMELFtwflDDEVKNL----NIH--NVKLTIIGDISRFKTKLQNRIKHAVDLT 75
Cdd:PRK14835   82 LELGIPTVTIWVFSTDNFSRSPAEVETLMNLF----EREARRMavdpRIHanRVRVRAIGRHDGFPPKVLEALEELEERT 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  76 ANNTGLQLNIAANYGGRWDITHAM-GLIAEKIKAGsLLPENINEDTVNEFISLH----DQPTVDLVIRTGREYRISNFLL 150
Cdd:PRK14835  158 EGHEGMLLNIAVGYGGREEIVDAVkSLLLEAAATG-KSPEEVAAELTPEHISAHlytaGVPDPDFIIRTSGEIRLSGFLL 236

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1027398269 151 WQIAYAEFYFTDVLWPDFDEEAFKSAIVAFNQRERRFG 188
Cdd:PRK14835  237 WQSAYSEYYFCDVYWPGFRKVDFLRALRDYQGRERRFG 274
PRK14828 PRK14828
undecaprenyl pyrophosphate synthase; Provisional
 3-189 2.13e-40

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237825  Cd Length: 256  Bit Score: 137.57  E-value: 2.13e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269   3 ENEIQSLTLYAFSSENWNRPETEVSALMELftwfLDDEVKNLNIH-NVKLTIIGDISRFKTKLQNRIKHAVDLTANNTGL 81
Cdd:PRK14828   69 ETDVNVVTLYLLSTDNLGRPSEELNPLLDI----IEDVVRQLAPDgRWRVRHVGSLDLLPAPSANRLKEAEEATVGNDGI 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027398269  82 QLNIAANYGGRWDITHAM--GLIAEKIKAGSL--LPENINEDTVNEFISLHDQPTVDLVIRTGREYRISNFLLWQIAYAE 157
Cdd:PRK14828  145 KVNVAVGYGGRQEIVDAVrsLLTEHKDKGTSIdeLAESVTVDAISTHLYTGGQPDPDLVIRTSGEQRLSGFMLWQSAHSE 224

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1027398269 158 FYFTDVLWPDFDEEAFKSAIVAFNQRERRFGN 189
Cdd:PRK14828  225 YYFCETYWPAFRKVDFLRALRDYSQRERRFGK 256
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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