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Conserved domains on  [gi|349587507|pdb|1VU0|U]
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Protein Classification

Parvo_coat domain-containing protein (domain architecture ID 10465144)

Parvo_coat domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Parvo_coat pfam00740
Parvovirus coat protein VP2; This protein, together with VP1 forms a capsomer. Both of these ...
4-492 0e+00

Parvovirus coat protein VP2; This protein, together with VP1 forms a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-terminal region of VP1. VP2 is involved in packaging the viral DNA.


:

Pssm-ID: 279128  Cd Length: 518  Bit Score: 588.90  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U          4 GVGNASGNWHCDSTWLGDRVITTSTRTWALPTYNNHLYKQISSAST----------GASNDNHYFGYSTPWGYFDFNRFH 73
Cdd:pfam00740   1 GVGNSTGNWHNDTTFMGNRVTCTATRTVHIPTYNNHLYKQFSSQSTtdtnasgkkaNVSNDDHHFGYSTPWGYVDFNAWG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U         74 CHFSPRDWQRLINNNWGFRPKRLNFKLFNIQVKEVTTNDGVTTIANN-LTSTVQVFSDSEYQLPYVLGSAHQGCLPPFPA 152
Cdd:pfam00740  81 VWFSPRDFQRLINNNSGIRPVRLNQEIFNIQVKTVTENDGGGTIANNdLTATLQVAVDSEYILPYVLGAAHQETLPFFPW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U        153 DVFMIPQYGYLTLNN-GSQAVG---------RSSFYCLEYFPSQMLRTGNNF-TFSYTFEDVPFHSSYAHSQSLDRLMNP 221
Cdd:pfam00740 161 DVTMPPQYRYLTVNNvNTQGVGgdsvklaseRSQFYTLENFPIQLLRTGDNFaTGSYTFEDVPFHSSYAHSQSLDRLMNP 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U        222 LIDQYLYYLNRTQNQSGSAQNKDLLFSRGSPagMSVQPKNWLPGPCYRQQRVSKTKTDNNNSN-----FTWTGASKYNLN 296
Cdd:pfam00740 241 LKLTYLYYLSRLGTPSGTTTQSRLQFSQASD--IRDQSRNWLPGPCYRQQTVSKTSADNNNAGagkaqGSWTGTTQYGLN 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U        297 GRESIINPGTAMASHKDDKDKFFPMSGVMIFGKESAGASNTALDNVMITDEEEIKATNPVATERFGTVAVNLQ----SSS 372
Cdd:pfam00740 319 GEDIRVRPGPVGASYPHWDEKAFPQGGVAIFGPQGSEDTTVGIEKVMITDEQNGSTRYPYAKEQYGSNSTNLLrgleRHT 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U        373 TDP-----ATGDVHVMGALPGMVWQDRDVYLQGPIWAKIPHTDGHFHPS-PLMGGFGLKHPPPQILIKNTPVPANPpaef 446
Cdd:pfam00740 399 YFPnngtaQTADLNTPPVLPGMVWNDRDVHFEGQIWDKIPHLDGHFKPSfPLMGGFGLKNPPPQIFVKLTPVPANL---- 474
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*...
1VU0_U        447 satkfaSFITQYSTGQVSVEIEWELQKENSKRWNPE--VQYTSNYAKS 492
Cdd:pfam00740 475 ------TTTTQYDTGQVKVTMEWKLQKEASTRWNPVpgVQYTDNYNKS 516
 
Name Accession Description Interval E-value
Parvo_coat pfam00740
Parvovirus coat protein VP2; This protein, together with VP1 forms a capsomer. Both of these ...
4-492 0e+00

Parvovirus coat protein VP2; This protein, together with VP1 forms a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-terminal region of VP1. VP2 is involved in packaging the viral DNA.


Pssm-ID: 279128  Cd Length: 518  Bit Score: 588.90  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U          4 GVGNASGNWHCDSTWLGDRVITTSTRTWALPTYNNHLYKQISSAST----------GASNDNHYFGYSTPWGYFDFNRFH 73
Cdd:pfam00740   1 GVGNSTGNWHNDTTFMGNRVTCTATRTVHIPTYNNHLYKQFSSQSTtdtnasgkkaNVSNDDHHFGYSTPWGYVDFNAWG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U         74 CHFSPRDWQRLINNNWGFRPKRLNFKLFNIQVKEVTTNDGVTTIANN-LTSTVQVFSDSEYQLPYVLGSAHQGCLPPFPA 152
Cdd:pfam00740  81 VWFSPRDFQRLINNNSGIRPVRLNQEIFNIQVKTVTENDGGGTIANNdLTATLQVAVDSEYILPYVLGAAHQETLPFFPW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U        153 DVFMIPQYGYLTLNN-GSQAVG---------RSSFYCLEYFPSQMLRTGNNF-TFSYTFEDVPFHSSYAHSQSLDRLMNP 221
Cdd:pfam00740 161 DVTMPPQYRYLTVNNvNTQGVGgdsvklaseRSQFYTLENFPIQLLRTGDNFaTGSYTFEDVPFHSSYAHSQSLDRLMNP 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U        222 LIDQYLYYLNRTQNQSGSAQNKDLLFSRGSPagMSVQPKNWLPGPCYRQQRVSKTKTDNNNSN-----FTWTGASKYNLN 296
Cdd:pfam00740 241 LKLTYLYYLSRLGTPSGTTTQSRLQFSQASD--IRDQSRNWLPGPCYRQQTVSKTSADNNNAGagkaqGSWTGTTQYGLN 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U        297 GRESIINPGTAMASHKDDKDKFFPMSGVMIFGKESAGASNTALDNVMITDEEEIKATNPVATERFGTVAVNLQ----SSS 372
Cdd:pfam00740 319 GEDIRVRPGPVGASYPHWDEKAFPQGGVAIFGPQGSEDTTVGIEKVMITDEQNGSTRYPYAKEQYGSNSTNLLrgleRHT 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U        373 TDP-----ATGDVHVMGALPGMVWQDRDVYLQGPIWAKIPHTDGHFHPS-PLMGGFGLKHPPPQILIKNTPVPANPpaef 446
Cdd:pfam00740 399 YFPnngtaQTADLNTPPVLPGMVWNDRDVHFEGQIWDKIPHLDGHFKPSfPLMGGFGLKNPPPQIFVKLTPVPANL---- 474
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*...
1VU0_U        447 satkfaSFITQYSTGQVSVEIEWELQKENSKRWNPE--VQYTSNYAKS 492
Cdd:pfam00740 475 ------TTTTQYDTGQVKVTMEWKLQKEASTRWNPVpgVQYTDNYNKS 516
 
Name Accession Description Interval E-value
Parvo_coat pfam00740
Parvovirus coat protein VP2; This protein, together with VP1 forms a capsomer. Both of these ...
4-492 0e+00

Parvovirus coat protein VP2; This protein, together with VP1 forms a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-terminal region of VP1. VP2 is involved in packaging the viral DNA.


Pssm-ID: 279128  Cd Length: 518  Bit Score: 588.90  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U          4 GVGNASGNWHCDSTWLGDRVITTSTRTWALPTYNNHLYKQISSAST----------GASNDNHYFGYSTPWGYFDFNRFH 73
Cdd:pfam00740   1 GVGNSTGNWHNDTTFMGNRVTCTATRTVHIPTYNNHLYKQFSSQSTtdtnasgkkaNVSNDDHHFGYSTPWGYVDFNAWG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U         74 CHFSPRDWQRLINNNWGFRPKRLNFKLFNIQVKEVTTNDGVTTIANN-LTSTVQVFSDSEYQLPYVLGSAHQGCLPPFPA 152
Cdd:pfam00740  81 VWFSPRDFQRLINNNSGIRPVRLNQEIFNIQVKTVTENDGGGTIANNdLTATLQVAVDSEYILPYVLGAAHQETLPFFPW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U        153 DVFMIPQYGYLTLNN-GSQAVG---------RSSFYCLEYFPSQMLRTGNNF-TFSYTFEDVPFHSSYAHSQSLDRLMNP 221
Cdd:pfam00740 161 DVTMPPQYRYLTVNNvNTQGVGgdsvklaseRSQFYTLENFPIQLLRTGDNFaTGSYTFEDVPFHSSYAHSQSLDRLMNP 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U        222 LIDQYLYYLNRTQNQSGSAQNKDLLFSRGSPagMSVQPKNWLPGPCYRQQRVSKTKTDNNNSN-----FTWTGASKYNLN 296
Cdd:pfam00740 241 LKLTYLYYLSRLGTPSGTTTQSRLQFSQASD--IRDQSRNWLPGPCYRQQTVSKTSADNNNAGagkaqGSWTGTTQYGLN 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U        297 GRESIINPGTAMASHKDDKDKFFPMSGVMIFGKESAGASNTALDNVMITDEEEIKATNPVATERFGTVAVNLQ----SSS 372
Cdd:pfam00740 319 GEDIRVRPGPVGASYPHWDEKAFPQGGVAIFGPQGSEDTTVGIEKVMITDEQNGSTRYPYAKEQYGSNSTNLLrgleRHT 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VU0_U        373 TDP-----ATGDVHVMGALPGMVWQDRDVYLQGPIWAKIPHTDGHFHPS-PLMGGFGLKHPPPQILIKNTPVPANPpaef 446
Cdd:pfam00740 399 YFPnngtaQTADLNTPPVLPGMVWNDRDVHFEGQIWDKIPHLDGHFKPSfPLMGGFGLKNPPPQIFVKLTPVPANL---- 474
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*...
1VU0_U        447 satkfaSFITQYSTGQVSVEIEWELQKENSKRWNPE--VQYTSNYAKS 492
Cdd:pfam00740 475 ------TTTTQYDTGQVKVTMEWKLQKEASTRWNPVpgVQYTDNYNKS 516
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.16
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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