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Conserved domains on  [gi|9256862|pdb|1EMU|B]
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Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SAMP super family cl15568
SAMP Motif; This short region is found repeated in the mid region of the adenomatous polyposis ...
1-16 2.24e-03

SAMP Motif; This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin.


The actual alignment was detected with superfamily member pfam05924:

Pssm-ID: 310483  Cd Length: 22  Bit Score: 30.61  E-value: 2.24e-03
                         10
                 ....*....|....*.
1EMU_B         1 SEDDLLQECISSAMPK 16
Cdd:pfam05924  4 DEDDLLQECIGSAMPK 19
 
Name Accession Description Interval E-value
SAMP pfam05924
SAMP Motif; This short region is found repeated in the mid region of the adenomatous polyposis ...
1-16 2.24e-03

SAMP Motif; This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin.


Pssm-ID: 310483  Cd Length: 22  Bit Score: 30.61  E-value: 2.24e-03
                         10
                 ....*....|....*.
1EMU_B         1 SEDDLLQECISSAMPK 16
Cdd:pfam05924  4 DEDDLLQECIGSAMPK 19
 
Name Accession Description Interval E-value
SAMP pfam05924
SAMP Motif; This short region is found repeated in the mid region of the adenomatous polyposis ...
1-16 2.24e-03

SAMP Motif; This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin.


Pssm-ID: 310483  Cd Length: 22  Bit Score: 30.61  E-value: 2.24e-03
                         10
                 ....*....|....*.
1EMU_B         1 SEDDLLQECISSAMPK 16
Cdd:pfam05924  4 DEDDLLQECIGSAMPK 19
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.16
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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