YP_479145 2 TYLSRIWLNPLRTGAQALLK-N-----------PQR-----------M--HAAVLGGLSRQPVTER--------VL---- 44 Frankia sp. CcI3 YP_250424 2 ttFTRLHLNPSSRQARKLLG-N-----------PQA-----------M--HAAVLSCFPKEVSEKEr-------IL---- 45 Corynebacterium je... YP_618907 1 MYLSRVEIDTDNRQKIKDLS-H-----------LGA-----------Y--HNWVERSFPAEIAEGErq-----rHL---- 46 Lactobacillus delb... YP_805655 1 MYLSRVQVNTNDHQIFKHLT-H-----------LGA-----------Y--HDWVKRSFPREIAAGTrl-----rHL---- 46 Lactobacillus case... YP_120638 1 MFLSRVPLNPARQGTRKLLS-S-----------PQA-----------A--HAAVLAAFPPQPSTPGtg-----rVL---- 46 Nocardia farcinica... NP_828714 3 vWLTRIVPDPRSRDARRDLGgN-----------DSA-----------MglHRRLMSLYPCDAGPDPrar---fgVL---- 53 Streptomyces averm... YP_289647 2 TWLTKIVPDLRYRQTRADFR-T-----------AGN-----------L--HRKLIRLSSDLGEERIanprqqsgLL---- 52 Thermobifida fusca YX YP_113414 3 asLYMIELRPDPAALIRFAQ-DqglnthqdqdlGYA-----------T--HAWLKALCGELAPKPFr-------LLqdgr 61 Methylococcus caps... YP_745518 2 LHLIHLPIEARS--FARWAR-D-----------RGFgpkgtqdndavL--HHLLTQLFGRQMLQPFr-------V----- 53 Granulibacter beth... YP_289654 1 M-------------------------------------------------HAAVMSSFPTLLPSDTdg----prVL---- 23 Thermobifida fusca YX
YP_479145 45 -WRLE---TgeglrgadRPHRAEVLV-----------LTESTPSWEHLieqagwihtD----E-----P--Q-------V 91 Frankia sp. CcI3 YP_250424 46 -WRHDgkvR--------GADEHFVYI-----------VGPDSCDPTKI---------A----EqtgseS--D-------P 83 Corynebacterium je... YP_618907 47 -WRLD---T--------LNGRNYLLL-----------LSPEKPDLHEF---------ErygkP-----G--T-------A 80 Lactobacillus delb... YP_805655 47 -WRLD---S--------LNGRDYLLV-----------LSPDAPELAQLar-----ygV----A-----G--T-------A 80 Lactobacillus case... YP_120638 47 -WRVD---R--------RDHAVDLYV-----------VSPSEPDFTHI---------V----E-----Q--AgwptttaW 83 Nocardia farcinica... NP_828714 54 -FRIE---D--------TPAGAHILL-----------QSAHEPDLTRLp-------dG----Y-----G--Q-------A 85 Streptomyces averm... YP_289647 53 -FRIE---E--------TRNELYLLV-----------QSHSPLRVDRL---------G----P-----GyhG-------V 84 Thermobifida fusca YX YP_113414 62 nLRPP---Rllg---fsAHDGTRLTE-----------HARAFASPLAA---------Qv---C-----S--L-------A 98 Methylococcus caps... YP_745518 54 -FTPE---Q--------ANWSLYAYAnqdattlveqaRFSITPDMT-----------E----V-----I--S-------L 92 Granulibacter beth... YP_289654 24 -WRID---Rt-------SRAEVFLYI-----------VSPPKPDLTHLveqa--gwpT----Q-----P--T-------W 61 Thermobifida fusca YX
YP_479145 92 LvRDYQPLLDRLHTGREFRFRLRANTVSatR------------TPDNPspAQKEHLAAPRPRGVR--VGHRTAA-HQTTW 156 Frankia sp. CcI3 YP_250424 84 QkASYNRLLEALADGQQWHYEVVLNPVa----------------------AKKAPGSPRGTRGKL--TALVGEA-AQLEW 138 Corynebacterium je... YP_618907 81 IsKDYEPFLSRLSEGQLLQFKLTANPV-------------------------RRGGKSSSHPGSL--IPCFAVD-EQMKW 132 Lactobacillus delb... YP_805655 81 QtKDYDPFVTALRQGQRLRFRLTANPTR--A------------IAT------------PGQRGHV--APHVTVA-QQMAW 131 Lactobacillus case... YP_120638 84 TtRKYGPLLDRLAVDQQWHFRLTANPVRa---------------------AMNRDAEAPLTRGKR--RGL-TVA-GQMGW 138 Nocardia farcinica... NP_828714 86 ItRPLDPLLDALKPGLTIRYRCTASPVR--K------------PGANTraLYNLPA--------V--VPLNGAA--ADEW 139 Streptomyces averm... YP_289647 85 QmRNLDPFLARLDKGSRVRYRIVASPTK--R------------LGRSEnnTQRLGLKEPPKKPREytWALRGAA--AEEW 148 Thermobifida fusca YX YP_113414 99 DgIAFKPMPESWPNGRKLGFEVMACPIS--R------------LGRNEddVYRRHLRDCDARAQS--PDSREM--VYRRW 160 Methylococcus caps... YP_745518 93 ErLRSKAMPDA-KPGQRIGFDVRIRPVR--RsakqhdqesekmQERDAflAEALHNHADDKTGMK--SANRTREmVYREW 167 Granulibacter beth... YP_289654 62 EsYDYTPFLSRLAKGDVWAFRLTANPVh----------------------SIRRKAGEPTKLTAH----LTQRY--QKKW 113 Thermobifida fusca YX
YP_479145 157 LTDRIDRWGFTL--------L-------------TtadldgprnqpdgprnqpdgpgdtdepaPALRLTARERLTFPKKA 215 Frankia sp. CcI3 YP_250424 139 FNTKAKSCGFTP--------L-------------Et---------------------------LIVERKTLRFSKLAKNP 170 Corynebacterium je... YP_618907 133 LQGKAEKNGFEL---------------------------------------------------VAAEVVGHDRPLLRKK- 160 Lactobacillus delb... YP_805655 132 LSERAAALGFEL--------Pid---------ddG----------------------------PQFQIVGRDYPALRRAQ 166 Lactobacillus case... YP_120638 139 LQDKSASSGFRLgtcrtlegD-------------V----------------------------PDAVITERTTERFRRGS 177 Nocardia farcinica... NP_828714 140 WTRQADAAGLKP--------La------------L----------------------------HPHPLDAAQGVRAGNGD 171 Streptomyces averm... YP_289647 149 WHSRAAANGLEL--------Ls------------T----------------------------YAQTLDDVRDPGTADRS 180 Thermobifida fusca YX YP_113414 161 LTRQ---FGSAA--------T-------------L----------------------------DDFSLDGFRYLRLLRKA 188 Methylococcus caps... YP_745518 168 LAERMPWA------------T-------------L----------------------------ETARLAHFQRRRVLRNG 194 Granulibacter beth... YP_289654 114 LLQRQDAAGFRV--------VekpaekrrlpegdE----------------------------HELIVHNRRDWNFSKGA 157 Thermobifida fusca YX
YP_479145 216 KntektGRR--VVLNTATFEGALRVTDPARARATLLHGVGPAKAYGCGLITLAP 267 Frankia sp. CcI3 YP_250424 171 K-----GRQ--VVIGTVRYRGTLQIDDVETFKKSLVEGIGRGKAYGCGLLTLAK 217 Corynebacterium jeikeium K411 YP_618907 161 -------TH--VALNRTVFEGRLKISNLDQFKAMLTSGIGREKAFGMGLMTVIP 205 Lactobacillus delbrueckii subsp. bulgaricus ... YP_805655 167 G-----KP---VRLSRVSFEGTLVVSDLVRFKETLATGIGREKAFGMGLLTVIP 212 Lactobacillus casei ATCC 334 YP_120638 178 A-------T--VTLSVVTYEGVLAVSDPEKLRTALVNGIGRAKGYGCGLLTLAP 222 Nocardia farcinica IFM 10152 NP_828714 172 K-----Q-R--IRHNRIRFDGSATITDPDLLRQKITEGIGRGKAYGCGLLSIAP 217 Streptomyces avermitilis MA-4680 YP_289647 181 R-----K----IRHPAVRFDGEAVISDVDAVRHAVLNGIGRGKSYGCGLLSLAl 225 Thermobifida fusca YX YP_113414 189 R-----GTRsgFLAPQALFRGTLSVRDGAGFGALLARGIGRHRAFGFGMLLLRP 237 Methylococcus capsulatus str. Bath YP_745518 195 N-----G----IEGPDATIHGTMIIGDPAQFSEALRKGIGRHSAYGYGMMMLRP 239 Granulibacter bethesdensis CGDNIH1 YP_289654 158 R-----KGRp-VSLVTVTFDGRLEVTDPDALRRALISGIGRAKAYGCGLMTLAP 205 Thermobifida fusca YX
Jiyao W et al.(2023). "The conserved domain database in 2023.",