Conserved Protein Domain Family
CPSF73-100_C

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smart01098: CPSF73-100_C 
This is the C-terminal conserved region of the pre-mRNA 3'-end-processing of the polyadenylation factor CPSF-73/CPSF-100 proteins.
The exact function of this domain is not known.
Statistics
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PSSM-Id: 215023
Aligned: 29 rows
Threshold Bit Score: 112.891
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_757617    493 QGDIVDGLLIS--KDFAYTILD-PKDLTDFTGL-STSTIVQRQRVALAvswEMVRWHLQGMYGRLqe-gVDAEEGLRT-- 565 Ustilago maydis...
NP_176297    484 VGDTVSGILVK--KGFTYQIMA-PDELHVFSQL-STATVTQRITIPFVgafGVIKHRLEKIFESVef-sTD----EESgl 554 thale cress
XP_460457    568 TGKALSGVLVS--KDFDLNLLQ-LQDLHEFTQL-STSIVKSK--INLKinaDISLMKWHLEQMFGfi-sILADDEETWec 640 Debaryomyces ha...
XP_001348538 590 vnnqIEGIIIT--EPQNVPILIyPNDIYEYTNL-KTAMIDQTINISFPyrfDLLYNVIINVYEEThm------------- 653 Plasmodium falc...
NP_586205    552 EGEF-EGIIIG--TEDDIRIYK-RDELIESKY--KEMCIYERQRIPYNstaVLLKQVLVDGFEELve-vESG-------- 616 Encephalitozoon...
XP_625507    535 skidieetllimrpfeptlLMK-PQDVSEIIDV-KKSCIKQTMRIPLPknfVMDLNKLEKEIEKSfddvILNNEMIYLye 612 Cryptosporidium...
XP_452404    530 NEK--IVSGILvsDEKNFDLSL-VSLSDLREHyqQLSTTVLTERQTVHldcKSELVYWHICQMFGdv-dVYIDEENVSlk 605 Kluyveromyces l...
NP_986945    534 EER--VISGILvsDEKNFDLNL-VSLSDLREHhtDLSTTVLKERQTVHvdcRNELIFWHLCQMFGdi-eVLVDEEGATlt 609 Ashbya gossypii...
XP_001385241 558 TGQ--LMSGVLv--sMDFDLDL-LQLQDLHEYt-QLSTSIVKSKMSLKinaDITLMKWHLEQMFGfi-nIVNDDEDEWec 630 Pichia stipitis...
XP_753048    531 DGR--LMSGVLvqN--GFDLSL-MAPDDLREYagLTTTTITCKQHITLssaSMDLIRWALEGTFGai-eELGSNERSKvk 604 Aspergillus fum...
XP_757617    566 ----------------------------LRIMGAVDVRQSAR--H-----ELL-VEWVSS-IANDM-VADSIVALLLGID 607 Ustilago maydis...
NP_176297    555 ---------------------------pALKVHERVTVKQES--E-----KHIsLQWSSD-PISDM-VSDSIVALILNIS 598 thale cress
XP_460457    641 v------------------------imdMIDISVEKNNSQSA--G-----GLL-INVEWV-NDNLMaDSLADSVIAILYS 687 Debaryomyces ha...
XP_001348538 654 --------------------------ddNLIIVKDIKIIYCKddK-----MIK-INWLSS-PLNDL-IADSINFLILEFL 699 Plasmodium falc...
NP_586205    617 ------------------------------FMVGNVHIVLSG--Q-----EVV-LEWKSS-YTDDV-LAISISKMISDIG 656 Encephalitozoon...
XP_625507    613 ---------------------------nSIVIYIIKEIGQDG--HdlgdhELI-IQWNSS-QLCDL-VVDTLSFMILDYI 660 Cryptosporidium...
XP_452404    606 ninpef--------------ktrkikkgELEIKIMGDVILNI--Vd-----nV-ATLQWTqN-VIS-DSVADSVMAILLS 661 Kluyveromyces l...
NP_986945    610 kveed----------------ekntkpgQLVVRVMGDIKLSV--Vd-----hV-ATLEWTqN-VIS-DAVADSIVAILLS 663 Ashbya gossypii...
XP_001385241 631 i------------------------imdMIDLLVDRSKTDSl----------Y-ITLEWInDNLMS-DSMADSVIAILYS 674 Pichia stipitis...
XP_753048    605 eestkavngeqeikeepadeeipmeetqTYLVMGCVLIRYHS--Rt-----rE-VELEWEgN-MMN-DGVADAVMAVLLT 674 Aspergillus fum...
XP_757617    608 SAPsSVKMTmHNHHHHHHHHHHHHP--------G------------------------Dakaeetdddaeattedeeart 655 Ustilago maydis...
NP_176297    599 REVpKIVMEeEDAVKSEEENGKKV---------E------------------------Kv-------------------- 625 thale cress
XP_460457    688 IDSsPASVKlTSKSCSHSHNKVKEE--------VdddamiestpppeknahanseissRi-------------------- 739 Debaryomyces ha...
XP_001348538 700 ETMnTNQNSiPIADVLTDHNIYEMI--------I------------------------Syvee----------------- 730 Plasmodium falc...
NP_586205    657 LKTkSVRLSkMGK--------------------K------------------------El-------------------- 672 Encephalitozoon...
XP_625507    661 AFLsENKQDeNSLADIEIYNTLRSSiennyglcI------------------------Dg-------------------- 696 Cryptosporidium...
XP_452404    662 VESaPASIKmSSKSCG--HHHGHddht----------------------------------------------------- 686 Kluyveromyces l...
NP_986945    664 VDSsPASVKrSSHSCNSNDHPGEsetl----------------------------------------------------- 690 Ashbya gossypii...
XP_001385241 675 IDSsPASVKlSSRSHNHNHDNIEKEstpptkksah--------------------------------------------- 709 Pichia stipitis...
XP_753048    675 VESsPASVKqSAKLKHHHHHHSDLE--------L------------------------Pnphahq--------------- 707 Aspergillus fum...
XP_757617    656 ptesaanlpmhpfseaalvaesevrakaatdeavhrdayqlakmehMAA--FLEAHFGQVE------ELVipeapiseei 727 Ustilago maydis...
NP_176297    626 ----------------------------------------------IYA--LLVSLFGD--------VKL---------- 639 thale cress
XP_460457    740 ----------------------------------------------HRItsLLKAQFGDSL------KTA---------- 757 Debaryomyces ha...
XP_001348538 731 ------------------------------------------nftnVER--ISKEILKEKT------LQMi--------- 751 Plasmodium falc...
NP_586205    673 ----------------------------------------------LVS--VLKNHFMVEK------EN----------- 687 Encephalitozoon...
XP_625507    697 ----------------------------------------------IHP--QIEAQIKDKNleideySKK---------- 718 Cryptosporidium...
XP_452404    687 -------------------------------------------tkiKNI--SRVFKEQFGD------TFTlfln------ 709 Kluyveromyces l...
NP_986945    691 -------------------------------------------wkiKQI--AKLFNEQFGD------SFTllldk----- 714 Ashbya gossypii...
XP_001385241 710 -------------------------------------anseissriHRI--SSLLKAQFGD------SLN---------- 734 Pichia stipitis...
XP_753048    708 ----------------------------------------gpeetfENL--LMMLEAQFG-------SNIapierpri-- 736 Aspergillus fum...
XP_757617    728 eesvpkvkvetereaekdeagdesmstlqpepdsvtdvdkpelappaeqatasppisiaslfdgEARSALRVFLDEAEAV 807 Ustilago maydis...
NP_176297    640 ----------------------------------------------------------------GENGKLVIRVDGNVAQ 655 thale cress
XP_460457    758 ----------------------------------------------------------------AGEEGKKATIVIGKNE 773 Debaryomyces ha...
XP_001348538 752 ----------------------------------------------------------------KKKEQLKLKNNDNENS 767 Plasmodium falc...
NP_586205    688 -------------------------------------------------------------------DDIKVMNGDMMAR 700 Encephalitozoon...
XP_625507    719 ----------------------------------------------------------------DNFPNFYFSVKDTRDN 734 Cryptosporidium...
XP_452404    710 --------------------------------------------------------------eedSKEEIKGTINLGKTT 727 Kluyveromyces l...
NP_986945    715 ------------------------------------------------------------esehsDNENIKGSVTIGKNY 734 Ashbya gossypii...
XP_001385241 735 -----------------------------------------------------------------NLEDNKAVITIGKNE 749 Pichia stipitis...
XP_753048    737 ----------------------------------------------------------psgiranrTTKADPSVSAAVKT 758 Aspergillus fum...
XP_757617    808 IDVENLV-IL---------ASS--ESFRARVQHLCTLALRSFTSL 840 Ustilago maydis 521
NP_176297    656 LDKESGEv-E---------SEH--SGLKERVRVAFERIQSAVKPI 688 thale cress
XP_460457    774 AKIDYLNlTV----------DC--NSRVLRDRIENIIKRGCGLAA 806 Debaryomyces hansenii CBS767
XP_001348538 768 QNFKDDNvCE---------DQNveDSNTNNIYLDEQINLFSYDQI 803 Plasmodium falciparum 3D7
NP_586205    701 ISGDGVT-------------GD--AGIVDKINECIKKIEAIYLrd 730 Encephalitozoon cuniculi GB-M1
XP_625507    735 KRNVIVNiLYkeriiltepNDN--KEIREKICNLIQNIEDSTLPI 777 Cryptosporidium parvum Iowa II
XP_452404    728 ACINFSKmVVe---------eC--NSNPLKGRIESLLKIGSDLVA 761 Kluyveromyces lactis NRRL Y-1140
NP_986945    735 ATVNFSKmAVe---------dC--NSNPLKGRIESILGIGADLVA 768 Ashbya gossypii ATCC 10895
XP_001385241 750 AKINYLDlTv----------dC--GSRVLRDRIENIIKRGCGLAA 782 Pichia stipitis CBS 6054
XP_753048    759 KSDAAGEtPAe---------sQ--EDESTEEIEAAELARLQALGI 792 Aspergillus fumigatus Af293
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