1B33


Conserved Protein Domain Family
CpcD

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smart01094: CpcD 
Click on image for an interactive view with Cn3D
CpcD/allophycocyanin linker domain
Statistics
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PSSM-Id: 215022
Aligned: 48 rows
Threshold Bit Score: 43.724
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1B33_N         1 GRLFKITACVP-----S-----QTRirTQRELQNTYFtklVPYENWFREQQRIQKMGGKIVKVEL 55  Mastigocladus laminosus
YP_001225283  13 ERVFTLVVVGL-----------QSS--NQRRSEQTFT---VSYDRLQSTVQRINACGGRILSVTa 61  Synechococcus sp. WH 7803
YP_723585    233 GKVYRVEVTAY-----RskvvnRVS--RFRRSNQVFL---VPFDQLSKEYQRIHRQGGVIASITP 287 Trichodesmium erythraeum IMS101
YP_001224226 238 GKTYRVEVTAYsannvR-----RIS--RYTRSNRVYF---VPFDKLSEQFKRIHAEGGKISSITP 292 Synechococcus sp. WH 7803
YP_001227016  13 pRMFAIEVAGM-----S------GA--GVKRSNEVLK---VSYDQLNSVMRNTGRSGARIVRVTP 61  Synechococcus sp. RCC307
YP_376761     13 SGLFTVVASGR-----Q-----AGS--R-PTVVQSYT---VPLRQLSTTFKQITASGARILSVTA 61  Synechococcus sp. CC9902
YP_377900      6 GTQFTVQVSAL-----N-----RS-----RPSLATHFk--VPFNNLSSGMRVMHRTGFRINSVST 53  Synechococcus sp. CC9902
NP_896844     13 SSLFTVVASGI-----Q-----AG---SGPSVIRTYR---VAMSGLNDLYKRLAASGARILSVSP 61  Synechococcus sp. WH 8102
ZP_05790168   13 EALFTVVASGP-----H-----VG---SQPSVVQTYT---VGMNQFSALFKRLGASGAKILSVNG 61  Synechococcus sp. WH 8109
YP_730216     12 ERAFTIVFTGL-----G-----G------RRAELSRLn--VSYGRLRDTICVLLSRGARIQSVSP 58  Synechococcus sp. CC9311
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