2EYQ


Conserved Protein Domain Family
CarD_TRCF

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smart01058: CarD_TRCF 
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CarD-like/TRCF domain
CarD is a Myxococcus xanthus protein required for the activation of light- and starvation-inducible genes. This family includes the presumed N-terminal domain. CarD interacts with the zinc-binding protein CarG, to form a complex that regulates multiple processes in Myxococcus xanthus. This family also includes a domain to the N-terminal side of the DEAD helicase of TRCF proteins. TRCF displaces RNA polymerase stalled at a lesion, binds to the damage recognition protein UvrA, and increases the template strand repair rate during transcription. This domain is involved in binding to the stalled RNA polymerase.
Statistics
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PSSM-Id: 215001
Aligned: 254 rows
Threshold Bit Score: 58.2335
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2EYQ_A        479 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTY--An-D-A-KLYVPVSS-L-H-L-ISRYAGG-AEeNAPLHKL 548  Escherichia coli
YP_250077       2 EFAVGDTVVYPHHGAAVIEGIEQREFKGETVDYLVLRIn-Qg-D-L-SVRVPAAN-A-EkV-GVRDVVGeEGlRKVFSVL 74   Corynebacteri...
NP_696170       2 sYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVlsSd-G-L-VINVPVDN-AkK-V-GVRDIVSaSEvAKVFDIL 75   Bifidobacteri...
YP_001221804    2 iFEVGETVVYPHHGAATITAVKTRTIKGVDKKYITLQIh-Qs-E-L-VIDVPVDN-A-E-LvGLRDVIDsSGvEAVFDVL 74   Clavibacter m...
YP_005787       3 EFRPGDKVVLPPYGVGVVAGIAQRSVSGVSRAYYQVDF--Pg-SrS-KAYVPVEA-P-HsV-GLRKALApEEvPVILDLL 75   Thermus therm...
YP_633761       9 QLAVGDRVVYPNQGVCRVSAIDVKEVAGQKLTFVTMRRe-Ed-G-A-VVMVPEGKvL-A-I-GVRKVASaEDvEAIFTFL 81   Myxococcus xa...
NP_787477       2 QFKVGQTVVYPHHGTASILEIKKRVIRGEEVTYLKLHV--Sd-G-DlMIEVPAEK-I-EaV-GLRGVIDsDGaRRVVEVL 74   Tropheryma wh...
YP_603642       5 fFRTGDRVVLPPYGIGVVSGTCQRPVAGSIQVYYQVDF--Pn-T-AsRAFVPVDA-P-Q-StGLRAALTaADmPGLLQRL 77   Deinococcus g...
YP_701670       2 nLNIGDIFLYPHHGSVTVTKLTTRMFNDLPTEYVQFEV--AqnG-L-SIEIPVAK-A-EsI-GVRNAINnDEvGRVFDIL 74   Rhodococcus s...
YP_466064      29 ELKPGDRVVYPNQGVCAVVGWEVKDIAGQKLELVRMTRe-Ed-G-A-AVMVPKGK-VpS-I-GLRRVATgAQmEGVFHYL 101  Anaeromyxobac...
2EYQ_A        549 GG------D-------AWSRARQ----K----AAE----KVRDVAAELLDIYA 576  Escherichia coli
YP_250077      75 REtdveeaG-------NWSRRYKanqeR----LTS----GDVNKVAEVVRDLW 112  Corynebacterium jeikeium K411
NP_696170      76 RT------Piie-kemNWSRRYKlnveK----IAT----GDVNKIAEVVRDLA 113  Bifidobacterium longum NCC2705
YP_001221804   75 RGdveeeaG-------NWSRRFKanteK----MGS----GDVRRVSEVVRDLW 112  Clavibacter michiganensis subsp. michiga...
YP_005787      76 KN------Grmp-lpkQWAARHR----KtseiLAE----GNPYRIAQmagqlr 113  Thermus thermophilus HB27
YP_633761      82 RS------Dsdk-adlDWKQRARtnldR----MTQ----GGIMGLAEVVKGLq 119  Myxococcus xanthus DK 1622
NP_787477      75 REnlvdepT-------NWSRRYKsnleK----IAS----GDVTKVTEVVRDLS 112  Tropheryma whipplei str. Twist
YP_603642      78 QS------SqtlnlprQWAARHR----R----VTEilvgGDPYEIATLtcelr 116  Deinococcus geothermalis DSM 11300
YP_701670      75 RGptvddpS-------NWSRRFKanqeK----LTV----GGIFTVSEVIRDLM 112  Rhodococcus sp. RHA1
YP_466064     102 GA------Vydd-pelDWKIRHRdnadR----LIA----GGVLGVAEVVKGLH 139  Anaeromyxobacter dehalogenans 2CP-C
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