1XIO,3A7K,3DDL,1M0K,2KSY,1E12


Conserved Protein Domain Family
Bac_rhodopsin
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smart01021: Bac_rhodopsin 
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Bacteriorhodopsin-like protein
The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria.. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, the last of which contains the attachment point for retinal (a conserved lysine).
Links
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Statistics
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PSSM-Id: 214978
Aligned: 45 rows
Threshold Bit Score: 116.224
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1XIO_A         7 LhWIYVAGMTIGALHFWSLSRNP-RGV-PQYEYLVAMFIPIWSGLAYMAMAIDQGKV-----------EAA-GQIAHYAR 72  Anabaena sp.
YP_446609      7 VyIIGTLGMLVGIPPALSLVGDE-VGL-D--FDYVWA-IPGIAAFMYLLMTFDVGSVq-----------fQ-GYHVPIPR 69  Salinibacter ru...
NP_280434      7 AyLGGAVALIVGVAFVWLLYRSLdGSP-HQSALAPLAIIPVFAGLSYVGMAYDIGTVi-----------vN-GNQIVGLR 73  Halobacterium s...
NP_923144     44 AfSFAIAAMFASALFFFSAQALV-GQR-YRLALLVSAIVVSIAGYHYFRIFNSWDAAyvlengvysltSEK-FNDAY--R 118 Gloeobacter vio...
YP_135281      7 WyGAGAGAFFVSAVVFVWFAATR-GNI-RSSFYYLPPIHTSVAGAAYVAMALIAGg-----------qLGD-TVSITTLR 72  Haloarcula mari...
3DDL_A        19 MfSFTVATMTASFVFFVLARNNV-APK-YRISMMVSALVVFIAGYHYFRITSSWEAAyalqn-gmyqpTGElFNDAY--R 93  Salinibacter ruber
YP_001361545  25 SlVVAGFALLAHFLRTWHSTGEV-SAR-YRPAVLASLAVTGVAFLSYVYLVLEFDQGydlre-gvyqpNAE-ALNTLVPR 100 Kineococcus rad...
YP_137680      7 VyGITAAGFAVGVAIVGFLYASL-EGSdERPILAALALIPGVAGISYVAMVFGIGTVt-----------iG-ETTLVGFR 73  Haloarcula mari...
YP_001277280  15 AlSFTIAAMGAAFVFFLLARNTV-AST-YQRAMVLAAIIVGIAAYHYVRMFTSWSTAftvsgaiytptGEP-FNEAY--R 89  Roseiflexus sp....
YP_001445352  85 SfWLISMALMASTVFFLWETQGV-TAK-WKTSLTVSALVTLIAAVHYFYM-RD-VWVa----------tGE-TPTVY--R 147 Vibrio harveyi ...

1XIO_A        73 YIDWMVTTPLLLLSLS----WTAMQFIKKdwtlIGFLMSTQIVVITSGLIADL-----Se--R-D-W----VRYLWYICG 135 Anabaena sp.
YP_446609     70 YIDWALTTPLLVGYTA----YIAGASRGM----IAGTALADFMMIVFGLGAVV-----F---S-S-T----AQWVFFGLS 127 Salinibacter ru...
NP_280434     74 YIDWLVTTPILVGYVG----YAAGASRRS----IIGVMVADALMIAVGAGAVV-----T---D-G-T----LKWALFGVS 131 Halobacterium s...
NP_923144    119 YVDWLLTVPLLLVETV----AVLTLPAKEarplLIKLTVASVLMIATGYPGEI-----S---D-DiT----TRIIWGTVS 181 Gloeobacter vio...
YP_135281     73 FADWIVSTPIITYYLA----RLAGVDTQT----RRLAVAANVVMIGVGYGFVS-----M---S-G-S----LRWIAFAVS 130 Haloarcula mari...
3DDL_A        94 YVDWLLTVPLLTVELV----LVMGLPKNErgplAAKLGFLAALMIVLGYPGEV-----S---E-N-AalfgTRGLWGFLS 159 Salinibacter ruber
YP_001361545 101 YMDWAVTVPLLMVEFLavsaVVGAAARRT----RFTLVGLAFLMILTGFIGAAvqedgT---S-R-T----ALIAWGVVS 167 Kineococcus rad...
YP_137680     74 YLDWVVTTPLLVGFIG----YTAGASRRA----IFGVMAADALMILAGVGAVV-----A---A-G-T----LKWALFGVS 131 Haloarcula mari...
YP_001277280  90 YADWLLTVPLLLVELV----AVLHITGQQrsgmIARLVIAAVLMIVLGYPGEI-----S---SdV-T----TRLVWGTLS 152 Roseiflexus sp....
YP_001445352 148 YIDWLLTVPLLMIEFY----LILRAIGAAsagiFWRLLVGTLIMLIAGFLGEV-----GyisV-T-V--------GFVIG 208 Vibrio harveyi ...

1XIO_A       136 VCAFLIILWGIW-NPLRAKTRTQSSELanl-ydKLVTYFTVLWIgYPIVWIIG-------PsGFGWIN-Q-TIDTFLFCL 204 Anabaena sp.
YP_446609    128 SACHLTLLALLY-GPVRNSAFGEPPSHrrl-arLLLNYVGLLWLaYPLVWLFG-------P-GLQWVD-A-AGIAVIISY 195 Salinibacter ru...
NP_280434    132 SIFHLSLFAYLY-VIFPRVVPDVPEQIgl--fnLLKNHIGLLWLaYPLVWLFG-------PaGIGEAT-A-AGVALTYVF 199 Halobacterium s...
NP_923144    182 TIPFAYILYVLW-VELSRSLVRQPAAVqtl-vrNMRWLLLLSWGvYPIAYLLPm------L-GVSGTSaA-VGVQVGYTI 251 Gloeobacter vio...
YP_135281    131 TVAFIGLLYLYI-KTFARKINAATASVrsl-fqSLRDLTVVTWSlYPVVYFLG-------PlGTGIIQ-A-PDLNFLVAV 199 Haloarcula mari...
3DDL_A       160 TIPFVWILYILF-TQLGDTIQRQSSRVstl-lgNARLLLLATWGfYPIAYMIPmafpeafP-SNTPGT-I-VALQVGYTI 234 Salinibacter ruber
YP_001361545 168 SAFYAALHVVLI-RVLRRSRGAMGAQAyts-yrNATILLLSVWGwYPIAYALQv-----wF-GGQWWT-V-TI-QVGFSA 236 Kineococcus rad...
YP_137680    132 AVFHISLFAYLY-LIFPRSVPDDPQRIgl--fsLLKNHVGLLWIaYPLVWLAGp------E-GLGFAT-Y-VGVSITYAF 199 Haloarcula mari...
YP_001277280 153 SIPFLYILYVLW-RDLGAVMERESAEVrvl-lrNLRLLLLASWGvYPIAYLLPl------L-SIDPAT-AlVARQVGYSI 222 Roseiflexus sp....
YP_001445352 209 MLGWFYILYEIFlGEAGKAAKHQASDSvkfaynLMRWIVTVGWAiYPLGYVLG-------Y-MMGAVD-D-ASLNLVYNL 278 Vibrio harveyi ...

1XIO_A       205 LPFFSKVGFSFLDLHGLRNLNDSRQTT 231 Anabaena sp.
YP_446609    196 LDVTAKVPFVYFIYRARKNFVKVTGGE 222 Salinibacter ruber DSM 13855
NP_280434    200 LDVLAKVPYVYFFYARRRVFMHSESPP 226 Halobacterium sp. NRC-1
NP_923144    252 ADVLAKPVFGLLVFAIALVKTKADQES 278 Gloeobacter violaceus PCC 7421
YP_135281    200 LDTIAKVGFMSILLVRYNSVETFVDSW 226 Haloarcula marismortui ATCC 43049
3DDL_A       235 ADVLAKAGYGVLIYNIAKAKSEEEGFN 261 Salinibacter ruber
YP_001361545 237 ADIAAKVGFGALIHKVAKLRTAEEVEA 263 Kineococcus radiotolerans SRS30216
YP_137680    200 LDLLAKVPYVYFFYARRQVFatkllrd 226 Haloarcula marismortui ATCC 43049
YP_001277280 223 ADIVAKPAYGLLIYAIARIKTQQERGE 249 Roseiflexus sp. RS-1
YP_001445352 279 ADVVNKIAFGLLIWYAATSESQdakg- 304 Vibrio harveyi ATCC BAA-1116
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