1W54,1W1Z,1I8J,2Z1B,1YLV


Conserved Protein Domain Family
ALAD

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smart01004: ALAD 
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Delta-aminolevulinic acid dehydratase
This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, ), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme.
Statistics
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PSSM-Id: 214968
Aligned: 235 rows
Threshold Bit Score: 407.925
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1W54_A        10 YPYTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLIEAEEWVALGIPALALFPVt 89  Pseudomonas aer...
YP_007091     18 NIIKRPRRNRRTAAIRGLVQENHLHPSQLIAPLFVLEGKQQQIAIKSMPGIFRYSIDEMLKEVKSLYQLGIRAVDLFCY- 96  Candidatus Prot...
YP_002888256   5 pLLKRPRRNRKSAAVRSIIQETQLCSSDLIWPIFLKDGSGIREEIKSMPGVYRWSLDMVSKELERLCTIGLKAVILFPV- 83  Chlamydia trach...
YP_001499493   5 YPHIRLRRNRKAFWLRELISESNLSVSDLVLPLFVVEGHNERQEIKTMPGIYRLSIDQIVETAKEAAELGINVIALFPS- 83  Rickettsia mass...
NP_224940      5 tLSRRPRRNRKTAAIRDLLAETHLSPKDLIAPFFVKYGNNIKEEIPSLPGVFRWSLDLLLKEIERLCTYGLRAVMLFPI- 83  Chlamydophila p...
YP_266461      6 YPNLRLRRSRKNDWSRRLVQENSLSSSDFILPIFLIDGKNIKQSIKTMPDVYRYTIDKLGIIVDRAIKSKIPMVALFPY- 84  Candidatus Pela...
YP_153728     22 FPKTRMRRRRAHAWMRNIVRETALCAGNLILPIFVHEHDEDIIPVEGLDCMRNVSAKGAAHLAREALEAGINAVIVFPS- 100 Anaplasma margi...
YP_001248768   6 ckFVRLRRNRQYEWLRDLVAETSILSSDLILPIFITDGMNKEIIINTMPSVKIVSPDLALQKVEEAIDYGIRAVALFPS- 84  Orientia tsutsu...
YP_506281      4 gsFVRLRRTRRNKIIRDLVAETTLSASQLILPLFVTNGSNIELQVNEMPGVYAHSIDILKKIVESAITVGVRSIMLFPRd 83  Neorickettsia s...
AAL73120      95 etNRRERRIKRNKYLLSLYNNTNIKTSNFIYPLFIHE-EDVEKKHTQLEGIYTYNVDGIIKEIEECIKLNIHHFMFFPV- 172 malaria parasit...
1W54_A        90 pV--E--K--KSLDAAEAYNPEGIAQRATRALR--ERFP-E-LGIITDVALDPFTTHGQCGILdDD-G-YVLNDVSIDVL 157 Pseudomonas aer...
YP_007091     97 -I--EgdK--KDSFASEAVRSGNLFCRAIQTLK--ENFP-D-LCVMMDVALDPFTSHGHDGITnEK-G-EIDNDLTLPIL 165 Candidatus Prot...
YP_002888256  84 -I--DanK--KEQFGSYASHPYNIVCKGIQAIK--KSFP-E-LCVISDIALDPFTTSGHDGIf-HN-N-YVINDESVRVY 151 Chlamydia trach...
YP_001499493  84 -I--D--HslKSENADEAYNLDNLICRTIRSIK--NANI-D-IGIICDVALDPYTTHGHDGIV-HN-G-EVDNDRSVRAL 151 Rickettsia mass...
NP_224940     84 -IpdD--L--KDAYGSYSSNPKNILCHSIHEIK--NAFP-H-LCLISDIALDPYTTHGHDGIFl-N-G-EVLNDESVRIF 151 Chlamydophila p...
YP_266461     85 -T--N--KtkKNEIGSEALNEDNLVCKAIRYIK--KRYKnE-IGIMCDVALDPYTSHGHDGLI-KS-G-YVLNDETIEVL 153 Candidatus Pela...
YP_153728    101 -R--C--K--KSTDAEEAYNPNNLICGAIRHIK--DCVP-E-IGVIADVALDPYTTSGHDGIV-VD-G-EVDNDATITAL 166 Anaplasma margi...
YP_001248768  85 -I--SaaQ--KSNDAAEACNANNLICQTIRLLKsnNRFR-K-VGIIADVALDPYTIHGHDGLLtDDcL-DIDNDRTLAVL 156 Orientia tsutsu...
YP_506281     84 -P--G--K--RSFEAEEAYNPENLICRAVRALK--RDFGgD-LVIITDIAADPYTIDGHDGFy-RD-G-KILNDETLELL 150 Neorickettsia s...
AAL73120     173 -IreE--N--KTVYCEESYNENSYFCKTISRIK--EKFS-DdIIVYTDVALDPYNIYGHDGIYdDN-KkEILNDITVHTL 243 malaria parasit...
1W54_A       158 VRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTNVRVMAYSAKYASAYYGPFRDAVGS-AsnLG-K---G--NKA 230 Pseudomonas aer...
YP_007091    166 AQMSILAAEAGADVVAPSDMMDGRIGYIRHALDQEGYQQVGILSYAAKYASAFYAPFREALHS-V--LQ-F---G--DKK 236 Candidatus Prot...
YP_002888256 152 GGIAVMHAEMGADIVAPSDMMDGRVKHIREQMDQMGFVNTGILSYSAKYASALYGPFRDALSS-H--LQ-S---G--DKR 222 Chlamydia trach...
YP_001499493 152 CNQALVLAKAGVDIVAPSDMMDGRIGAIREYLDKKGFINVGILAYAAKYASSFYGPFRDAVKS-N--KKnY---L--DKS 223 Rickettsia mass...
NP_224940    152 GNIATLHAEMGADIVAPSDMMDGRIGYIRSKLDQSGYSKTSIMSYSVKYASCLYSPFRDALSS-H--VT-S---G--DKK 222 Chlamydophila p...
YP_266461    154 INQSLLQAEIGCDILAPSDMMDGRIGKIRKALDKEGHEMVQLLSYAVKYASSFYGPFRDAVGSkG--LL-K---G--DKK 225 Candidatus Pela...
YP_153728    167 CKQAAVLAAAGCDVVAPSDMMDGRIGAIREFLDNCAFSNVCILSYAAKFCSCLYKPFRGVVGS-RtmSQ-S---I--DKS 239 Anaplasma margi...
YP_001248768 157 CKQSLKLADAGADIIAPSDMMDGRVKAIRGSLNSKGYCNTIILSYAVKYASNFYGPFRNVVGA-K--LS-S---GpsSKK 229 Orientia tsutsu...
YP_506281    151 IKQALVQAAAGSDMLAPSDMMDGRIFAIRNALNLAEFDEVPIVSYSAKYASNFYAPFRDALGS-T--NI-I---L--DKR 221 Neorickettsia s...
AAL73120     244 VKQSLCLAKSGADVVCPSDSMDKRIELIRKNLDFHNFRDILILSYTCKYSSSMYKPFRSILNS-N--IL-KnfvK--NKQ 317 malaria parasit...
1W54_A       231 TYQMDPANSDEALHEVAADLAEGADMVMVKPGMPYLDIVRRVKDE----FRAPTFVYQVSGEYAMHMGAIQNGWLAE--- 303 Pseudomonas aer...
YP_007091    237 TYQMNPANSREAMLECQLDEQEGADLILIKPALAYLDIIAKIKEQ----THLPVGAYHVSGEYAMVMAAALNGWLDAd-- 310 Candidatus Prot...
YP_002888256 223 TYQMDPANVQEALLECQLDEEEGADMVMIKPAGFYLDVIVKAREN----THLPVVAYQVSGEFSMIMAACLHGWLNKe-- 296 Chlamydia trach...
YP_001499493 224 SYQMDVRNIKEAMLEIEHDIVEGADMVMVKPGMSFLDVIREAAKN----FNAKIFAYQVSGEYAMLKFAAEAGAIDWe-- 297 Rickettsia mass...
NP_224940    223 QYQMNPKNVLEALLESSLDEEEGADILMVKPAGLYLDVIYRIRQN----TCLPLAAYQVSGEYAMILSAFQQGWLDKe-- 296 Chlamydophila p...
YP_266461    226 NYQMDFRNSNEAIREVALDIKEGADMVMVKPGMPYLDIIKTVKDN----FKIPVLAYQVSGEYSLLSNSIKKGLIDKn-- 299 Candidatus Pela...
YP_153728    240 TYQMDVANSREALLEARLDVDEGADMLMIKPGMFHLDVIAAVSAA----VEVPVFAYQVSGEYAMIKAASASGWLDYn-- 313 Anaplasma margi...
YP_001248768 230 TYQMDYRNTREALKAVEINIQEGADMVVVKPAMTYLDIISNVKNN----FNIPVFAYQTSGEYSMIKYAALNDCMDFd-- 303 Orientia tsutsu...
YP_506281    222 SYQMDYRNSKEAMREIEVDINEGADIVMIKPASFYLDIIKMATDR----FCVPIFAYQVSGEYKML---VQYGGL----- 289 Neorickettsia s...
AAL73120     318 SYQHDF-NSYMDLNNVDKHIIEGADIIMVKPSMFYLDIIHKIKNRikddVQIPIAVYNVSGEYMMIKNYVK--YLNEdin 394 malaria parasit...
1W54_A       304 ---SVILESLTAFKRAGADGILTYFAKQAAEQL 333 Pseudomonas aeruginosa
YP_007091    311 ---KVFEESLLSIKRAGADFILTYAARRVAENL 340 Candidatus Protochlamydia amoebophila UWE25
YP_002888256 297 ---SVIKESLLAIKRAGATAIISYATPWVLEWL 326 Chlamydia trachomatis Jali20
YP_001499493 298 ---RALMESLISFKRAGATGIFTYAALEVAEIL 327 Rickettsia massiliae MTU5
NP_224940    297 ---TLFHESLIAIKRAGADMIISYSAPFILELL 326 Chlamydophila pneumoniae CWL029
YP_266461    300 ---SV-LESLIAFKRAGANAIVSYYAdriedli 328 Candidatus Pelagibacter ubique HTCC1062
YP_153728    314 ---QCMYEALISMKRAGARCIITYAALEVARML 343 Anaplasma marginale str. St. Maries
YP_001248768 304 ---QAILESIQCIKRAGATAIFTYAAIKLARFL 333 Orientia tsutsugamushi str. Boryong
YP_506281    290 ---EVLLESLIAIRRAGAAGIVTYAAIEVAKYL 319 Neorickettsia sennetsu str. Miyayama
AAL73120     395 yenEIITELFKSYLRAGANIIITYFAKQyglym 427 malaria parasite P. falciparum
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